Wall clock time and date at job start Tue Mar 31 2020 15:09:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30897 * 1 3 3 Si 1.86794 * 120.00134 * 2 1 4 4 H 1.48503 * 109.47105 * 274.63549 * 3 2 1 5 5 H 1.48500 * 109.47272 * 34.63656 * 3 2 1 6 6 H 1.48506 * 109.47406 * 154.63546 * 3 2 1 7 7 C 1.39913 * 119.99787 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99542 * 162.92574 * 7 2 1 9 9 C 1.41017 * 120.00130 * 342.93356 * 7 2 1 10 10 C 1.40753 * 120.29071 * 334.26709 * 9 7 2 11 11 C 1.36406 * 119.96110 * 179.97438 * 10 9 7 12 12 C 1.39054 * 120.58320 * 0.02562 * 11 10 9 13 13 Cl 1.73595 * 119.70522 * 179.97438 * 12 11 10 14 14 C 1.38321 * 120.59098 * 359.72209 * 12 11 10 15 15 C 1.38676 * 120.01260 * 0.55718 * 14 12 11 16 16 N 1.38746 * 120.28524 * 179.72035 * 15 14 12 17 17 C 1.46503 * 119.99658 * 359.45273 * 16 15 14 18 18 C 1.50701 * 109.46807 * 180.27677 * 17 16 15 19 19 N 1.29905 * 124.85927 * 89.99935 * 18 17 16 20 20 C 1.36058 * 108.80068 * 179.97438 * 19 18 17 21 21 C 1.39589 * 133.80391 * 180.02562 * 20 19 18 22 22 C 1.37685 * 119.72918 * 179.97438 * 21 20 19 23 23 C 1.38721 * 120.42239 * 359.97438 * 22 21 20 24 24 C 1.37907 * 120.47646 * 0.02562 * 23 22 21 25 25 C 1.38673 * 119.87489 * 359.97438 * 24 23 22 26 26 O 1.34238 * 124.85157 * 269.69081 * 18 17 16 27 27 H 0.96998 * 119.99576 * 0.02562 * 1 2 3 28 28 H 1.07996 * 120.01541 * 0.02562 * 10 9 7 29 29 H 1.08005 * 119.70616 * 180.02562 * 11 10 9 30 30 H 1.07997 * 119.99550 * 180.30534 * 14 12 11 31 31 H 0.96999 * 120.00328 * 179.72308 * 16 15 14 32 32 H 1.09002 * 109.47102 * 300.26846 * 17 16 15 33 33 H 1.08997 * 109.47197 * 60.27586 * 17 16 15 34 34 H 1.07999 * 120.13566 * 359.95676 * 21 20 19 35 35 H 1.08002 * 119.78634 * 179.97438 * 22 21 20 36 36 H 1.07998 * 119.76108 * 180.02562 * 23 22 21 37 37 H 1.07995 * 120.06692 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 2.3925 2.1029 -1.3955 5 1 1.4929 2.6224 0.7958 6 1 3.5862 1.4138 0.5998 7 6 2.0085 -1.2117 0.0005 8 1 3.0528 -1.2324 -0.2741 9 6 1.3500 -2.4059 0.3595 10 6 0.2253 -2.3699 1.2050 11 6 -0.4069 -3.5291 1.5475 12 6 0.0498 -4.7521 1.0688 13 17 -0.7717 -6.2134 1.5197 14 6 1.1497 -4.8143 0.2323 15 6 1.8145 -3.6516 -0.1269 16 7 2.9219 -3.7080 -0.9610 17 6 3.4006 -5.0009 -1.4564 18 6 4.6102 -4.7876 -2.3296 19 7 5.8384 -4.7752 -1.9067 20 6 6.6646 -4.5579 -2.9656 21 6 8.0493 -4.4488 -3.1043 22 6 8.5952 -4.2210 -4.3477 23 6 7.7780 -4.1001 -5.4621 24 6 6.4084 -4.2057 -5.3400 25 6 5.8416 -4.4350 -4.0953 26 8 4.5729 -4.5889 -3.6567 27 1 -0.4849 0.8401 -0.0004 28 1 -0.1374 -1.4250 1.5817 29 1 -1.2698 -3.4966 2.1962 30 1 1.4932 -5.7690 -0.1379 31 1 3.3815 -2.8917 -1.2129 32 1 3.6693 -5.6364 -0.6126 33 1 2.6134 -5.4815 -2.0372 34 1 8.6899 -4.5423 -2.2398 35 1 9.6664 -4.1359 -4.4559 36 1 8.2176 -3.9219 -6.4324 37 1 5.7785 -4.1109 -6.2121 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161973716.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:45 Heat of formation + Delta-G solvation = 38.992858 kcal Electronic energy + Delta-G solvation = -23776.523334 eV Core-core repulsion = 20123.996874 eV Total energy + Delta-G solvation = -3652.526460 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.37750 -39.98644 -39.01709 -37.22903 -36.58244 -35.71348 -35.22656 -32.04571 -31.67255 -31.27636 -29.83110 -27.72288 -26.68189 -24.27175 -23.64654 -22.99003 -22.41672 -21.91468 -19.28369 -19.09804 -18.52373 -18.16988 -17.85772 -16.95201 -16.82974 -16.17685 -15.80968 -15.39726 -15.18247 -15.01156 -14.78710 -14.67618 -14.51345 -13.91568 -13.77302 -13.54743 -13.44792 -13.15264 -13.14930 -12.81544 -12.58785 -12.56075 -12.37326 -12.13830 -11.79436 -11.59480 -11.57368 -11.39351 -10.97163 -10.63302 -9.87465 -9.56320 -9.24592 -8.67648 -8.24577 -6.14533 -0.45478 0.17574 0.84524 1.17110 1.18637 1.35732 1.38091 1.44678 1.51391 1.71665 2.20243 2.55133 2.62136 2.71720 2.93630 3.43454 3.68333 3.81264 4.00342 4.13457 4.23024 4.29768 4.32170 4.43503 4.51171 4.60016 4.81338 4.94961 5.01929 5.09311 5.12036 5.27722 5.29150 5.33725 5.43075 5.51992 5.68307 5.81001 6.03381 6.15467 6.37695 6.45035 6.72728 6.84654 6.98676 7.08474 8.36188 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.009554 B = 0.003758 C = 0.002829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2929.979516 B = 7448.158661 C = 9894.513879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.040 3.960 3 Si 0.970 3.030 4 H -0.267 1.267 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.484 4.484 8 H 0.072 0.928 9 C 0.048 3.952 10 C -0.155 4.155 11 C -0.131 4.131 12 C -0.106 4.106 13 Cl -0.105 7.105 14 C -0.165 4.165 15 C 0.122 3.878 16 N -0.741 5.741 17 C 0.230 3.770 18 C 0.236 3.764 19 N -0.484 5.484 20 C -0.016 4.016 21 C -0.075 4.075 22 C -0.108 4.108 23 C -0.077 4.077 24 C -0.105 4.105 25 C -0.018 4.018 26 O -0.221 6.221 27 H 0.287 0.713 28 H 0.109 0.891 29 H 0.108 0.892 30 H 0.127 0.873 31 H 0.396 0.604 32 H 0.108 0.892 33 H 0.098 0.902 34 H 0.146 0.854 35 H 0.177 0.823 36 H 0.184 0.816 37 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.541 -6.117 -9.911 17.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.449 5.449 2 C -0.175 4.175 3 Si 0.792 3.208 4 H -0.192 1.192 5 H -0.191 1.191 6 H -0.187 1.187 7 C -0.514 4.514 8 H 0.090 0.910 9 C 0.043 3.957 10 C -0.176 4.176 11 C -0.152 4.152 12 C -0.133 4.133 13 Cl -0.076 7.076 14 C -0.189 4.189 15 C 0.022 3.978 16 N -0.377 5.377 17 C 0.105 3.895 18 C 0.024 3.976 19 N -0.215 5.215 20 C -0.127 4.127 21 C -0.094 4.094 22 C -0.127 4.127 23 C -0.094 4.094 24 C -0.124 4.124 25 C -0.068 4.068 26 O -0.112 6.112 27 H 0.097 0.903 28 H 0.127 0.873 29 H 0.126 0.874 30 H 0.145 0.855 31 H 0.231 0.769 32 H 0.125 0.875 33 H 0.116 0.884 34 H 0.164 0.836 35 H 0.195 0.805 36 H 0.201 0.799 37 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 13.464 -6.381 -9.319 17.574 hybrid contribution -0.390 1.063 -0.417 1.207 sum 13.075 -5.318 -9.736 17.147 Atomic orbital electron populations 1.69881 1.08637 1.30296 1.36090 1.26521 0.95365 1.03848 0.91756 0.85363 0.79259 0.77085 0.79077 1.19218 1.19116 1.18694 1.19367 0.97434 0.92136 1.42496 0.91017 1.17573 0.94050 0.91367 0.92726 1.20674 0.99422 0.96636 1.00861 1.20318 1.00880 0.91245 1.02728 1.20062 0.99520 0.85593 1.08167 1.98227 1.79300 1.37718 1.92390 1.20054 0.98220 0.96543 1.04059 1.17665 0.91047 0.93373 0.95754 1.43752 1.32246 1.06390 1.55335 1.19615 0.87670 0.88105 0.94139 1.26452 0.95426 0.96314 0.79433 1.70621 1.00493 1.19435 1.30918 1.20428 0.97004 1.06938 0.88350 1.20726 0.89550 0.98845 1.00302 1.21576 1.02505 0.98205 0.90403 1.21612 0.90584 0.95943 1.01291 1.20398 0.96438 1.02919 0.92595 1.21004 0.81393 1.05930 0.98489 1.84506 1.29416 1.72664 1.24641 0.90260 0.87275 0.87383 0.85508 0.76904 0.87462 0.88446 0.83644 0.80518 0.79906 0.82870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.92 10.99 21.83 0.24 -41.68 16 2 C 0.04 1.96 5.14 85.24 0.44 2.40 16 3 Si 0.97 37.88 29.59 68.60 2.03 39.91 16 4 H -0.27 -10.15 7.11 99.48 0.71 -9.44 16 5 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 6 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 7 C -0.48 -24.78 8.49 23.36 0.20 -24.58 16 8 H 0.07 3.56 6.70 -2.91 -0.02 3.54 16 9 C 0.05 2.43 5.58 -21.16 -0.12 2.31 16 10 C -0.15 -7.88 8.63 22.46 0.19 -7.69 16 11 C -0.13 -6.04 9.74 22.04 0.21 -5.83 16 12 C -0.11 -4.52 6.33 22.49 0.14 -4.37 16 13 Cl -0.10 -3.78 28.94 -2.72 -0.08 -3.86 16 14 C -0.16 -6.88 9.07 22.39 0.20 -6.67 16 15 C 0.12 5.51 6.68 38.97 0.26 5.77 16 16 N -0.74 -29.36 5.62 -341.78 -1.92 -31.28 16 17 C 0.23 7.31 5.53 85.63 0.47 7.78 16 18 C 0.24 7.79 7.60 88.39 0.67 8.46 16 19 N -0.48 -16.51 11.34 -296.26 -3.36 -19.87 16 20 C -0.02 -0.47 7.24 39.32 0.28 -0.18 16 21 C -0.08 -1.61 10.10 22.47 0.23 -1.38 16 22 C -0.11 -1.45 10.02 22.25 0.22 -1.23 16 23 C -0.08 -0.97 10.03 22.31 0.22 -0.75 16 24 C -0.10 -2.04 10.06 22.30 0.22 -1.82 16 25 C -0.02 -0.52 7.43 22.88 0.17 -0.35 16 26 O -0.22 -7.23 10.77 -10.07 -0.11 -7.34 16 27 H 0.29 13.32 8.30 -92.71 -0.77 12.55 16 28 H 0.11 5.83 6.22 -2.91 -0.02 5.81 16 29 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 30 H 0.13 4.54 6.72 -2.91 -0.02 4.52 16 31 H 0.40 16.54 6.69 -92.71 -0.62 15.92 16 32 H 0.11 3.17 7.95 -2.39 -0.02 3.15 16 33 H 0.10 2.79 7.94 -2.39 -0.02 2.77 16 34 H 0.15 2.66 8.06 -2.91 -0.02 2.64 16 35 H 0.18 0.95 8.06 -2.91 -0.02 0.92 16 36 H 0.18 0.75 8.06 -2.91 -0.02 0.72 16 37 H 0.15 2.31 8.06 -2.91 -0.02 2.29 16 Total: -1.00 -62.44 337.05 1.35 -61.09 By element: Atomic # 1 Polarization: 30.65 SS G_CDS: 0.52 Total: 31.17 kcal Atomic # 6 Polarization: -32.17 SS G_CDS: 4.03 Total: -28.14 kcal Atomic # 7 Polarization: -87.79 SS G_CDS: -5.04 Total: -92.83 kcal Atomic # 8 Polarization: -7.23 SS G_CDS: -0.11 Total: -7.34 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 17 Polarization: -3.78 SS G_CDS: -0.08 Total: -3.86 kcal Total: -62.44 1.35 -61.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161973716.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.084 kcal (2) G-P(sol) polarization free energy of solvation -62.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds