Wall clock time and date at job start Tue Mar 31 2020 15:42:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46696 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46732 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99820 * 179.97438 * 13 12 11 15 15 O 1.21273 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00011 * 180.02562 * 14 13 12 17 17 H 1.09008 * 115.54787 * 34.42371 * 16 14 13 18 18 C 1.52994 * 117.50438 * 248.75246 * 16 14 13 19 19 C 1.52996 * 117.49854 * 180.08864 * 16 14 13 20 20 H 1.08995 * 117.49787 * 0.02562 * 19 16 14 21 21 C 1.50704 * 117.49739 * 215.00344 * 19 16 14 22 22 C 1.33353 * 125.18698 * 119.72398 * 21 19 16 23 23 C 1.38469 * 114.92735 * 179.79518 * 22 21 19 24 24 C 1.33499 * 114.88789 * 0.49612 * 23 22 21 25 25 Cl 1.73594 * 125.21073 * 179.71402 * 24 23 22 26 26 S 1.75882 * 125.19102 * 300.02588 * 21 19 16 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 30 30 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 31 31 H 1.09003 * 109.46508 * 299.99548 * 11 10 9 32 32 H 1.08993 * 109.47679 * 59.99698 * 11 10 9 33 33 H 1.08995 * 109.46904 * 299.99571 * 12 11 10 34 34 H 1.09001 * 109.47205 * 59.99718 * 12 11 10 35 35 H 0.97003 * 120.00125 * 0.02562 * 13 12 11 36 36 H 1.09005 * 117.49458 * 359.97438 * 18 16 14 37 37 H 1.08998 * 117.50121 * 145.01705 * 18 16 14 38 38 H 1.07999 * 122.53110 * 359.97438 * 22 21 19 39 39 H 1.08005 * 122.55485 * 180.23324 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 6 1.8286 -6.1447 -0.0265 13 7 0.8766 -7.2581 -0.0324 14 6 1.3258 -8.5289 -0.0390 15 8 2.5181 -8.7505 -0.0398 16 6 0.3465 -9.6742 -0.0456 17 1 -0.5754 -9.5013 -0.6010 18 6 0.2606 -10.5377 1.2145 19 6 0.9189 -11.0931 -0.0510 20 1 2.0038 -11.1981 -0.0493 21 6 0.1650 -12.1446 -0.8236 22 6 0.6539 -12.8430 -1.8491 23 6 -0.2239 -13.7602 -2.4019 24 6 -1.4299 -13.7985 -1.8307 25 17 -2.7331 -14.8390 -2.3127 26 16 -1.4964 -12.6327 -0.5152 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0068 29 1 2.6846 -3.7098 -0.9038 30 1 2.6846 -3.7192 0.8761 31 1 0.4367 -4.7667 0.8700 32 1 0.4372 -4.7571 -0.9099 33 1 2.4558 -6.1978 -0.9164 34 1 2.4547 -6.2070 0.8636 35 1 -0.0771 -7.0808 -0.0321 36 1 0.9128 -10.2775 2.0482 37 1 -0.7176 -10.9331 1.4880 38 1 1.6594 -12.7057 -2.2184 39 1 0.0451 -14.3932 -3.2346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164544595.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:15 Heat of formation + Delta-G solvation = 18.334616 kcal Electronic energy + Delta-G solvation = -21184.291337 eV Core-core repulsion = 17666.313019 eV Total energy + Delta-G solvation = -3517.978317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.73 seconds Orbital eigenvalues (eV) -40.28335 -38.62597 -37.39322 -36.61023 -35.86027 -34.37251 -32.01582 -30.02287 -29.48483 -26.07006 -24.83159 -23.94276 -22.46876 -22.13072 -21.25024 -20.13456 -20.02503 -18.05696 -17.50419 -16.92742 -16.20312 -16.08676 -15.70913 -14.86482 -14.78737 -14.31307 -14.25374 -14.20512 -13.68004 -13.29173 -13.28603 -13.05467 -12.86873 -12.55508 -12.49078 -12.32000 -11.68853 -11.55401 -11.21866 -11.05596 -10.98043 -10.97751 -10.91693 -10.80072 -10.63485 -10.16162 -9.98174 -9.71420 -9.12868 -9.04637 -8.89884 -8.88987 -6.95276 -5.78528 -3.07581 0.26138 0.58901 1.30021 1.75337 2.04337 2.34372 2.97647 3.43847 3.45610 3.47950 3.49174 3.99901 4.22200 4.36601 4.57839 4.70615 4.76810 4.80142 4.96435 5.07910 5.18978 5.27258 5.40783 5.45857 5.55919 5.59029 5.60904 5.65231 5.84276 5.94195 6.02681 6.16249 6.29458 6.38834 6.76232 6.80513 7.38756 7.68326 8.08050 8.40361 9.51480 10.08361 10.43073 11.44356 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.029463 B = 0.001555 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.110895 B =18005.564512 C =18457.281548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.014 4.014 3 Si 0.909 3.091 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.285 1.285 7 C -0.242 4.242 8 H 0.071 0.929 9 N -0.733 5.733 10 C 0.156 3.844 11 C -0.138 4.138 12 C 0.122 3.878 13 N -0.721 5.721 14 C 0.542 3.458 15 O -0.541 6.541 16 C -0.175 4.175 17 H 0.128 0.872 18 C -0.142 4.142 19 C -0.056 4.056 20 H 0.142 0.858 21 C -0.138 4.138 22 C -0.126 4.126 23 C -0.113 4.113 24 C -0.155 4.155 25 Cl -0.015 7.015 26 S 0.154 5.846 27 H 0.256 0.744 28 H 0.384 0.616 29 H 0.022 0.978 30 H 0.022 0.978 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.403 0.597 36 H 0.114 0.886 37 H 0.106 0.894 38 H 0.151 0.849 39 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.870 -32.616 -1.629 33.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.210 4.210 3 Si 0.740 3.260 4 H -0.212 1.212 5 H -0.217 1.217 6 H -0.212 1.212 7 C -0.373 4.373 8 H 0.089 0.911 9 N -0.378 5.378 10 C 0.028 3.972 11 C -0.176 4.176 12 C -0.001 4.001 13 N -0.371 5.371 14 C 0.327 3.673 15 O -0.418 6.418 16 C -0.197 4.197 17 H 0.146 0.854 18 C -0.180 4.180 19 C -0.076 4.076 20 H 0.159 0.841 21 C -0.256 4.256 22 C -0.156 4.156 23 C -0.145 4.145 24 C -0.298 4.298 25 Cl 0.013 6.987 26 S 0.417 5.583 27 H 0.066 0.934 28 H 0.217 0.783 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.237 0.763 36 H 0.132 0.868 37 H 0.124 0.876 38 H 0.169 0.831 39 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -5.121 -32.305 -0.652 32.715 hybrid contribution 0.491 0.526 -1.222 1.418 sum -4.630 -31.779 -1.874 32.169 Atomic orbital electron populations 1.69649 1.05140 1.25813 1.57704 1.24753 0.95557 0.97758 1.02924 0.86235 0.78505 0.83364 0.77895 1.21226 1.21662 1.21218 1.19208 0.91092 0.84140 1.42872 0.91130 1.42322 1.05849 0.99962 1.89639 1.20523 0.93265 0.85199 0.98220 1.21949 0.99592 0.93273 1.02780 1.21395 0.91700 0.84507 1.02539 1.45993 1.10933 1.05516 1.74686 1.19455 0.88473 0.83276 0.76087 1.90709 1.16538 1.84727 1.49844 1.22453 1.01575 0.90806 1.04818 0.85418 1.23174 1.02922 1.00559 0.91340 1.20516 0.99700 0.88980 0.98426 0.84083 1.23853 0.96952 1.03003 1.01754 1.19966 1.01920 0.97007 0.96679 1.20207 0.91472 1.00780 1.02079 1.25252 0.95155 1.04191 1.05242 1.98376 1.45963 1.63915 1.90419 1.84370 1.10242 1.33005 1.30708 0.93447 0.78297 0.96058 0.96041 0.91243 0.91249 0.91253 0.91262 0.76317 0.86806 0.87616 0.83099 0.83235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 37. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 2 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 3 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 4 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 7 C -0.24 -6.82 9.99 -15.06 -0.15 -6.97 16 8 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 9 N -0.73 -18.55 5.60 -59.90 -0.34 -18.88 16 10 C 0.16 3.07 6.26 -4.04 -0.03 3.05 16 11 C -0.14 -2.04 5.44 -26.73 -0.15 -2.19 16 12 C 0.12 1.60 5.67 -4.04 -0.02 1.58 16 13 N -0.72 -7.83 5.56 -60.29 -0.33 -8.16 16 14 C 0.54 6.28 7.61 -10.98 -0.08 6.19 16 15 O -0.54 -8.26 16.26 5.56 0.09 -8.17 16 16 C -0.17 -1.43 5.89 -91.78 -0.54 -1.97 16 17 H 0.13 0.86 8.14 -51.92 -0.42 0.43 16 18 C -0.14 -0.97 9.75 -26.70 -0.26 -1.23 16 19 C -0.06 -0.44 5.73 -91.73 -0.53 -0.97 16 20 H 0.14 1.24 7.67 -51.93 -0.40 0.84 16 21 C -0.14 -1.04 6.14 -36.01 -0.22 -1.26 16 22 C -0.13 -0.91 10.05 -41.20 -0.41 -1.32 16 23 C -0.11 -0.79 10.13 -41.15 -0.42 -1.21 16 24 C -0.15 -1.17 7.10 29.07 0.21 -0.97 16 25 Cl -0.02 -0.11 29.29 -51.86 -1.52 -1.63 16 26 S 0.15 1.08 22.16 -107.50 -2.38 -1.30 16 27 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 28 H 0.38 10.07 7.67 -40.82 -0.31 9.76 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.40 3.39 8.47 -40.82 -0.35 3.04 16 36 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.11 0.58 7.27 -51.93 -0.38 0.20 16 38 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.15 0.79 8.06 -52.48 -0.42 0.37 16 LS Contribution 366.53 15.07 5.52 5.52 Total: -1.00 -32.76 366.53 -11.16 -43.92 By element: Atomic # 1 Polarization: 11.77 SS G_CDS: -5.21 Total: 6.56 kcal Atomic # 6 Polarization: -5.08 SS G_CDS: -2.70 Total: -7.77 kcal Atomic # 7 Polarization: -54.56 SS G_CDS: 0.05 Total: -54.51 kcal Atomic # 8 Polarization: -8.26 SS G_CDS: 0.09 Total: -8.17 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Atomic # 16 Polarization: 1.08 SS G_CDS: -2.38 Total: -1.30 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.52 Total: -1.63 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.76 -11.16 -43.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164544595.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.251 kcal (2) G-P(sol) polarization free energy of solvation -32.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.73 seconds