Wall clock time and date at job start Tue Mar 31 2020 15:42:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86803 * 120.00251 * 2 1 4 4 H 1.48496 * 109.47141 * 239.99943 * 3 2 1 5 5 H 1.48490 * 109.47071 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.46993 * 120.00220 * 3 2 1 7 7 C 1.38817 * 119.99888 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99823 * 179.97438 * 7 2 1 9 9 N 1.36931 * 119.99680 * 0.27479 * 7 2 1 10 10 C 1.46505 * 119.99788 * 179.72358 * 9 7 2 11 11 C 1.53005 * 109.46904 * 180.02562 * 10 9 7 12 12 C 1.53003 * 109.46696 * 180.02562 * 11 10 9 13 13 N 1.46501 * 109.46732 * 179.97438 * 12 11 10 14 14 C 1.34781 * 119.99820 * 179.97438 * 13 12 11 15 15 O 1.21273 * 120.00011 * 0.02562 * 14 13 12 16 16 C 1.50698 * 120.00011 * 180.02562 * 14 13 12 17 17 H 1.09008 * 115.54787 * 34.42371 * 16 14 13 18 18 C 1.52994 * 117.50438 * 248.75246 * 16 14 13 19 19 C 1.52996 * 117.49854 * 180.08864 * 16 14 13 20 20 H 1.08995 * 117.49787 * 0.02562 * 19 16 14 21 21 C 1.50704 * 117.49739 * 215.00344 * 19 16 14 22 22 C 1.33353 * 125.18698 * 119.72398 * 21 19 16 23 23 C 1.38469 * 114.92735 * 179.79518 * 22 21 19 24 24 C 1.33499 * 114.88789 * 0.49612 * 23 22 21 25 25 Cl 1.73594 * 125.21073 * 179.71402 * 24 23 22 26 26 S 1.75882 * 125.19102 * 300.02588 * 21 19 16 27 27 H 0.97005 * 119.99715 * 359.97438 * 1 2 3 28 28 H 0.97000 * 120.00420 * 359.72564 * 9 7 2 29 29 H 1.09003 * 109.46699 * 299.99766 * 10 9 7 30 30 H 1.08993 * 109.47199 * 59.99779 * 10 9 7 31 31 H 1.09003 * 109.46508 * 299.99548 * 11 10 9 32 32 H 1.08993 * 109.47679 * 59.99698 * 11 10 9 33 33 H 1.08995 * 109.46904 * 299.99571 * 12 11 10 34 34 H 1.09001 * 109.47205 * 59.99718 * 12 11 10 35 35 H 0.97003 * 120.00125 * 0.02562 * 13 12 11 36 36 H 1.09005 * 117.49458 * 359.97438 * 18 16 14 37 37 H 1.08998 * 117.50121 * 145.01705 * 18 16 14 38 38 H 1.07999 * 122.53110 * 359.97438 * 22 21 19 39 39 H 1.08005 * 122.55485 * 180.23324 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1040 1.6963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0902 -1.2022 -0.0010 9 7 1.3255 -2.3880 -0.0068 10 6 2.0580 -3.6568 -0.0134 11 6 1.0636 -4.8197 -0.0202 12 6 1.8286 -6.1447 -0.0265 13 7 0.8766 -7.2581 -0.0324 14 6 1.3258 -8.5289 -0.0390 15 8 2.5181 -8.7505 -0.0398 16 6 0.3465 -9.6742 -0.0456 17 1 -0.5754 -9.5013 -0.6010 18 6 0.2606 -10.5377 1.2145 19 6 0.9189 -11.0931 -0.0510 20 1 2.0038 -11.1981 -0.0493 21 6 0.1650 -12.1446 -0.8236 22 6 0.6539 -12.8430 -1.8491 23 6 -0.2239 -13.7602 -2.4019 24 6 -1.4299 -13.7985 -1.8307 25 17 -2.7331 -14.8390 -2.3127 26 16 -1.4964 -12.6327 -0.5152 27 1 -0.4850 0.8401 0.0004 28 1 0.3555 -2.3880 -0.0068 29 1 2.6846 -3.7098 -0.9038 30 1 2.6846 -3.7192 0.8761 31 1 0.4367 -4.7667 0.8700 32 1 0.4372 -4.7571 -0.9099 33 1 2.4558 -6.1978 -0.9164 34 1 2.4547 -6.2070 0.8636 35 1 -0.0771 -7.0808 -0.0321 36 1 0.9128 -10.2775 2.0482 37 1 -0.7176 -10.9331 1.4880 38 1 1.6594 -12.7057 -2.2184 39 1 0.0451 -14.3932 -3.2346 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164544595.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:14 Heat of formation + Delta-G solvation = -1.611559 kcal Electronic energy + Delta-G solvation = -21185.156268 eV Core-core repulsion = 17666.313019 eV Total energy + Delta-G solvation = -3518.843249 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.14381 -39.24288 -38.05752 -37.51760 -36.95458 -35.87565 -33.74824 -31.40420 -30.34275 -27.42829 -25.71140 -25.06982 -23.78577 -22.81771 -22.57871 -21.06781 -20.60665 -19.18606 -18.64614 -18.09190 -17.17468 -16.84481 -16.74957 -16.51050 -15.74322 -15.48739 -15.29628 -15.10172 -14.79614 -14.76454 -14.24824 -13.88061 -13.85273 -13.51267 -13.30412 -13.10369 -12.91174 -12.78539 -12.60481 -12.43511 -12.10745 -12.09763 -12.05438 -11.80322 -11.77765 -11.64597 -11.54824 -10.97466 -10.93623 -10.12927 -9.56718 -9.46252 -9.01878 -7.96480 -5.25650 -0.29334 0.05154 0.75511 1.20982 1.38456 1.48130 1.51097 1.57295 1.59709 2.09440 2.56569 2.81330 3.37305 3.37561 3.57027 3.73298 3.76552 4.01289 4.08674 4.18593 4.27677 4.29123 4.45641 4.47503 4.64666 4.73084 4.73313 4.86360 4.87866 4.91171 5.02366 5.12622 5.28068 5.31598 5.31692 5.41208 5.48729 6.26056 6.52185 7.19471 7.32680 8.07543 8.31359 9.26705 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.029463 B = 0.001555 C = 0.001517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.110895 B =18005.564512 C =18457.281548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.074 4.074 3 Si 0.975 3.025 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.278 1.278 7 C -0.253 4.253 8 H 0.075 0.925 9 N -0.746 5.746 10 C 0.151 3.849 11 C -0.118 4.118 12 C 0.133 3.867 13 N -0.712 5.712 14 C 0.540 3.460 15 O -0.582 6.582 16 C -0.175 4.175 17 H 0.147 0.853 18 C -0.128 4.128 19 C -0.058 4.058 20 H 0.129 0.871 21 C -0.145 4.145 22 C -0.132 4.132 23 C -0.114 4.114 24 C -0.169 4.169 25 Cl -0.015 7.015 26 S 0.167 5.833 27 H 0.252 0.748 28 H 0.376 0.624 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.063 0.937 35 H 0.417 0.583 36 H 0.113 0.887 37 H 0.124 0.876 38 H 0.160 0.840 39 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.088 -33.426 -1.580 33.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.618 5.618 2 C -0.266 4.266 3 Si 0.804 3.196 4 H -0.204 1.204 5 H -0.219 1.219 6 H -0.204 1.204 7 C -0.385 4.385 8 H 0.093 0.907 9 N -0.390 5.390 10 C 0.024 3.976 11 C -0.156 4.156 12 C 0.009 3.991 13 N -0.364 5.364 14 C 0.328 3.672 15 O -0.462 6.462 16 C -0.197 4.197 17 H 0.165 0.835 18 C -0.166 4.166 19 C -0.079 4.079 20 H 0.147 0.853 21 C -0.263 4.263 22 C -0.161 4.161 23 C -0.146 4.146 24 C -0.313 4.313 25 Cl 0.013 6.987 26 S 0.430 5.570 27 H 0.061 0.939 28 H 0.208 0.792 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.093 0.907 32 H 0.092 0.908 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.253 0.747 36 H 0.131 0.869 37 H 0.142 0.858 38 H 0.177 0.823 39 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -5.343 -33.144 -0.601 33.578 hybrid contribution 0.597 0.699 -1.243 1.546 sum -4.746 -32.445 -1.843 32.842 Atomic orbital electron populations 1.69798 1.06555 1.26269 1.59193 1.25585 0.96469 1.01149 1.03427 0.85190 0.77225 0.79002 0.78208 1.20412 1.21948 1.20363 1.19625 0.91586 0.85475 1.41773 0.90726 1.42525 1.05716 1.01136 1.89577 1.20690 0.94123 0.84796 0.97970 1.21700 0.98468 0.92185 1.03288 1.21102 0.91690 0.84367 1.01962 1.45864 1.11379 1.04905 1.74211 1.19986 0.88458 0.83910 0.74894 1.90693 1.18492 1.85311 1.51728 1.22408 1.01320 0.89567 1.06359 0.83504 1.23262 1.03592 0.99051 0.90665 1.20441 0.99255 0.88851 0.99316 0.85297 1.23871 0.97386 1.03102 1.01947 1.20161 1.02455 0.96922 0.96606 1.20397 0.91194 1.00729 1.02328 1.25419 0.95485 1.04632 1.05748 1.98374 1.45945 1.63930 1.90446 1.84250 1.09611 1.32714 1.30424 0.93890 0.79228 0.96080 0.95971 0.90663 0.90787 0.92001 0.91835 0.74657 0.86914 0.85822 0.82250 0.81833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -58.71 13.06 21.65 0.28 -58.42 16 2 C -0.07 -4.23 5.50 84.86 0.47 -3.77 16 3 Si 0.98 45.92 29.55 68.60 2.03 47.94 16 4 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 5 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 6 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 7 C -0.25 -14.20 9.99 84.04 0.84 -13.36 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.75 -37.68 5.60 -343.44 -1.92 -39.61 16 10 C 0.15 5.87 6.26 86.38 0.54 6.41 16 11 C -0.12 -3.37 5.44 30.60 0.17 -3.21 16 12 C 0.13 3.35 5.67 86.38 0.49 3.84 16 13 N -0.71 -14.40 5.56 -463.06 -2.57 -16.97 16 14 C 0.54 11.93 7.61 87.66 0.67 12.59 16 15 O -0.58 -17.65 16.26 -3.01 -0.05 -17.70 16 16 C -0.17 -2.56 5.89 -11.54 -0.07 -2.63 16 17 H 0.15 1.59 8.14 -2.38 -0.02 1.57 16 18 C -0.13 -1.51 9.75 30.62 0.30 -1.21 16 19 C -0.06 -0.85 5.73 -11.52 -0.07 -0.91 16 20 H 0.13 2.23 7.67 -2.39 -0.02 2.21 16 21 C -0.15 -1.98 6.14 24.58 0.15 -1.83 16 22 C -0.13 -1.72 10.05 21.22 0.21 -1.51 16 23 C -0.11 -1.44 10.13 21.25 0.22 -1.22 16 24 C -0.17 -2.34 7.10 66.75 0.47 -1.86 16 25 Cl -0.02 -0.21 29.29 -2.72 -0.08 -0.29 16 26 S 0.17 2.06 22.16 -56.49 -1.25 0.81 16 27 H 0.25 14.83 8.31 -92.70 -0.77 14.06 16 28 H 0.38 19.82 7.67 -92.71 -0.71 19.11 16 29 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 35 H 0.42 6.12 8.47 -92.71 -0.79 5.33 16 36 H 0.11 1.39 8.14 -2.38 -0.02 1.37 16 37 H 0.12 1.03 7.27 -2.39 -0.02 1.01 16 38 H 0.16 1.72 8.06 -2.91 -0.02 1.70 16 39 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 Total: -1.00 -69.32 366.53 0.41 -68.91 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: -0.41 Total: 24.00 kcal Atomic # 6 Polarization: -13.06 SS G_CDS: 4.39 Total: -8.68 kcal Atomic # 7 Polarization: -110.79 SS G_CDS: -4.21 Total: -115.00 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.05 Total: -17.70 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.94 kcal Atomic # 16 Polarization: 2.06 SS G_CDS: -1.25 Total: 0.81 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -0.08 Total: -0.29 kcal Total: -69.32 0.41 -68.91 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164544595.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.296 kcal (2) G-P(sol) polarization free energy of solvation -69.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds