Wall clock time and date at job start Tue Mar 31 2020 15:49:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86792 * 120.00512 * 2 1 4 4 H 1.48503 * 109.47474 * 269.99951 * 3 2 1 5 5 H 1.48508 * 109.47219 * 29.99996 * 3 2 1 6 6 H 1.48499 * 109.47502 * 149.99657 * 3 2 1 7 7 C 1.38821 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99929 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99788 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46829 * 174.37090 * 10 9 7 12 12 C 1.53000 * 115.54928 * 294.94719 * 11 10 9 13 13 C 1.53010 * 109.47138 * 279.32808 * 12 11 10 14 14 N 1.46499 * 109.46904 * 175.45461 * 13 12 11 15 15 C 1.34780 * 119.99723 * 179.97438 * 14 13 12 16 16 O 1.21717 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.46441 * 119.99880 * 180.02562 * 15 14 13 18 18 S 1.75826 * 125.46184 * 359.97085 * 17 15 14 19 19 C 1.70606 * 91.58419 * 180.02562 * 18 17 15 20 20 C 1.33767 * 110.99955 * 359.97438 * 19 18 17 21 21 C 1.36787 * 125.46102 * 179.97438 * 17 15 14 22 22 Cl 1.73603 * 123.37917 * 0.02562 * 21 17 15 23 23 C 1.52994 * 117.52119 * 80.65188 * 11 10 9 24 24 C 1.53003 * 60.00332 * 107.47859 * 23 11 10 25 25 H 0.97006 * 120.00078 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99858 * 359.97438 * 9 7 2 27 27 H 1.08999 * 109.47245 * 54.37047 * 10 9 7 28 28 H 1.08996 * 109.46966 * 294.36360 * 10 9 7 29 29 H 1.08995 * 109.47413 * 159.32896 * 12 11 10 30 30 H 1.08993 * 109.47264 * 39.32614 * 12 11 10 31 31 H 1.08994 * 109.47006 * 55.45376 * 13 12 11 32 32 H 1.08998 * 109.46640 * 295.45534 * 13 12 11 33 33 H 0.96995 * 120.00076 * 0.02562 * 14 13 12 34 34 H 1.08004 * 124.50084 * 179.73705 * 19 18 17 35 35 H 1.08003 * 122.45422 * 179.97438 * 20 19 18 36 36 H 1.09002 * 117.49771 * 214.96907 * 23 11 10 37 37 H 1.09003 * 117.49859 * 359.97438 * 23 11 10 38 38 H 1.08995 * 117.49970 * 252.51336 * 24 23 11 39 39 H 1.08996 * 117.49534 * 107.48917 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0695 -4.8162 0.1429 12 6 0.3068 -4.8754 1.4680 13 6 1.1940 -5.5132 2.5391 14 7 0.5057 -5.4715 3.8316 15 6 1.1006 -5.9806 4.9286 16 8 2.2096 -6.4755 4.8453 17 6 0.4124 -5.9395 6.2205 18 16 -1.1853 -5.2623 6.5041 19 6 -1.1081 -5.6525 8.1631 20 6 0.0501 -6.2517 8.4613 21 6 0.9094 -6.4217 7.4002 22 17 2.4684 -7.1718 7.5443 23 6 0.3329 -5.2747 -1.1172 24 6 1.4399 -6.1450 -0.5189 25 1 -0.4850 0.8401 0.0004 26 1 0.3554 -2.3880 0.0005 27 1 2.7574 -3.6718 0.8375 28 1 2.6074 -3.7599 -0.9340 29 1 -0.5960 -5.4727 1.3412 30 1 0.0344 -3.8659 1.7758 31 1 2.1320 -4.9625 2.6090 32 1 1.4001 -6.5493 2.2703 33 1 -0.3785 -5.0782 3.8977 34 1 -1.8889 -5.4402 8.8785 35 1 0.2933 -6.5775 9.4619 36 1 -0.6951 -5.6185 -1.0022 37 1 0.5520 -4.7501 -2.0472 38 1 2.3875 -6.1931 -1.0553 39 1 1.1402 -7.0613 -0.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164605022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:13 Heat of formation + Delta-G solvation = 24.575780 kcal Electronic energy + Delta-G solvation = -22487.289781 eV Core-core repulsion = 18969.582101 eV Total energy + Delta-G solvation = -3517.707680 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.87057 -38.45634 -37.91038 -36.25789 -34.85008 -33.90740 -30.98882 -30.73120 -29.34067 -26.04907 -25.35080 -23.47979 -22.74825 -21.91832 -21.27291 -19.82418 -19.18232 -18.19133 -17.04996 -16.66825 -16.00526 -15.67671 -15.31375 -15.05986 -14.48700 -14.41029 -13.90861 -13.83942 -13.66360 -13.23466 -13.12613 -13.03026 -12.65936 -12.23877 -11.92949 -11.71104 -11.59295 -11.46104 -11.12867 -11.02014 -10.95724 -10.83656 -10.59274 -10.15494 -9.97907 -9.89998 -9.64756 -9.33458 -9.32376 -9.00355 -8.84360 -8.83159 -6.89302 -5.75477 -3.03055 0.05231 0.85142 1.33867 1.88293 2.22520 3.00667 3.05726 3.44497 3.50037 3.51401 4.05878 4.45739 4.62398 4.67664 4.76582 5.01087 5.08876 5.15176 5.26827 5.31501 5.50075 5.55056 5.58849 5.62833 5.67466 5.75735 5.92059 6.14654 6.18305 6.23247 6.38512 6.43768 6.46812 6.55338 6.77168 6.85278 7.37516 7.71971 8.08494 8.43798 9.55546 10.13797 10.49689 11.47403 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.002940 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.483652 B = 9521.018425 C =10475.849601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.905 3.095 4 H -0.290 1.290 5 H -0.292 1.292 6 H -0.282 1.282 7 C -0.237 4.237 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.188 3.812 11 C -0.119 4.119 12 C -0.092 4.092 13 C 0.127 3.873 14 N -0.721 5.721 15 C 0.584 3.416 16 O -0.511 6.511 17 C -0.263 4.263 18 S 0.249 5.751 19 C -0.225 4.225 20 C -0.144 4.144 21 C 0.015 3.985 22 Cl -0.015 7.015 23 C -0.164 4.164 24 C -0.177 4.177 25 H 0.254 0.746 26 H 0.385 0.615 27 H 0.027 0.973 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.068 0.932 33 H 0.397 0.603 34 H 0.178 0.822 35 H 0.154 0.846 36 H 0.088 0.912 37 H 0.096 0.904 38 H 0.092 0.908 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.285 -16.091 14.952 22.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.209 4.209 3 Si 0.736 3.264 4 H -0.218 1.218 5 H -0.218 1.218 6 H -0.208 1.208 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.130 4.130 13 C 0.004 3.996 14 N -0.373 5.373 15 C 0.368 3.632 16 O -0.388 6.388 17 C -0.385 4.385 18 S 0.515 5.485 19 C -0.363 4.363 20 C -0.175 4.175 21 C -0.028 4.028 22 Cl 0.014 6.986 23 C -0.201 4.201 24 C -0.215 4.215 25 H 0.064 0.936 26 H 0.218 0.782 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.081 0.919 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.231 0.769 34 H 0.195 0.805 35 H 0.172 0.828 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.286 -15.685 13.978 21.665 hybrid contribution 0.792 0.475 1.117 1.449 sum -4.494 -15.211 15.096 21.896 Atomic orbital electron populations 1.69656 1.05054 1.25528 1.58009 1.24702 0.95505 0.97567 1.03156 0.86214 0.78716 0.83928 0.77501 1.21782 1.21811 1.20777 1.19244 0.91041 0.84189 1.42383 0.91272 1.42289 1.05887 0.99643 1.89328 1.20182 0.91897 0.84171 0.97733 1.21556 1.01761 0.96066 0.92644 1.21268 0.96864 1.02345 0.92511 1.21421 0.96476 1.01292 0.80390 1.45901 1.21204 1.61448 1.08730 1.16730 0.85372 0.79016 0.82032 1.90892 1.18363 1.44491 1.85016 1.24638 1.01746 1.13794 0.98284 1.83260 1.10442 1.53570 1.01213 1.25224 1.02916 1.06101 1.02091 1.19766 0.93409 1.04068 1.00258 1.20352 0.90504 0.99291 0.92620 1.98408 1.23188 1.79141 1.97873 1.22964 0.96459 1.03070 0.97629 1.22979 1.00065 0.94033 1.04417 0.93610 0.78164 0.95538 0.96544 0.91871 0.89365 0.90567 0.91381 0.76929 0.80455 0.82808 0.89317 0.88583 0.88915 0.89230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.82 13.06 55.49 0.72 -27.09 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.44 29.55 -169.99 -5.02 17.42 16 4 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 5 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 6 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 7 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 8 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 9 N -0.73 -18.08 5.30 -59.91 -0.32 -18.40 16 10 C 0.19 3.78 6.10 -4.04 -0.02 3.75 16 11 C -0.12 -1.88 1.52 -154.51 -0.23 -2.12 16 12 C -0.09 -1.32 5.24 -26.73 -0.14 -1.46 16 13 C 0.13 1.78 5.51 -4.04 -0.02 1.76 16 14 N -0.72 -9.34 5.55 -61.69 -0.34 -9.68 16 15 C 0.58 8.43 7.78 -12.96 -0.10 8.33 16 16 O -0.51 -8.95 15.09 5.17 0.08 -8.87 16 17 C -0.26 -3.13 6.45 -36.81 -0.24 -3.37 16 18 S 0.25 2.03 22.15 -107.50 -2.38 -0.36 16 19 C -0.23 -1.56 10.92 29.16 0.32 -1.24 16 20 C -0.14 -1.21 10.06 -41.38 -0.42 -1.63 16 21 C 0.01 0.17 6.39 -40.34 -0.26 -0.09 16 22 Cl -0.02 -0.19 27.24 -51.86 -1.41 -1.60 16 23 C -0.16 -2.38 9.90 -26.73 -0.26 -2.64 16 24 C -0.18 -2.34 9.57 -26.73 -0.26 -2.60 16 25 H 0.25 7.34 8.31 -40.82 -0.34 7.00 16 26 H 0.38 9.98 7.46 -40.82 -0.30 9.67 16 27 H 0.03 0.55 7.69 -51.93 -0.40 0.15 16 28 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.06 0.77 7.94 -51.93 -0.41 0.36 16 30 H 0.09 1.47 7.64 -51.93 -0.40 1.07 16 31 H 0.08 1.24 7.69 -51.93 -0.40 0.84 16 32 H 0.07 0.93 7.80 -51.93 -0.41 0.52 16 33 H 0.40 4.27 7.58 -40.82 -0.31 3.96 16 34 H 0.18 0.69 8.06 -52.48 -0.42 0.27 16 35 H 0.15 0.97 8.06 -52.48 -0.42 0.55 16 36 H 0.09 1.15 8.08 -51.93 -0.42 0.73 16 37 H 0.10 1.50 8.14 -51.93 -0.42 1.08 16 38 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.04 7.98 -51.93 -0.41 0.63 16 LS Contribution 360.66 15.07 5.44 5.44 Total: -1.00 -32.53 360.66 -10.24 -42.77 By element: Atomic # 1 Polarization: 14.05 SS G_CDS: -5.12 Total: 8.94 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: -1.88 Total: -8.56 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: 0.06 Total: -55.17 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.08 Total: -8.87 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.38 Total: -0.36 kcal Atomic # 17 Polarization: -0.19 SS G_CDS: -1.41 Total: -1.60 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -32.53 -10.24 -42.77 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164605022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.348 kcal (2) G-P(sol) polarization free energy of solvation -32.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.239 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds