Wall clock time and date at job start Tue Mar 31 2020 15:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86792 * 120.00512 * 2 1 4 4 H 1.48503 * 109.47474 * 269.99951 * 3 2 1 5 5 H 1.48508 * 109.47219 * 29.99996 * 3 2 1 6 6 H 1.48499 * 109.47502 * 149.99657 * 3 2 1 7 7 C 1.38821 * 119.99794 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99929 * 179.97438 * 7 2 1 9 9 N 1.36936 * 119.99885 * 0.02562 * 7 2 1 10 10 C 1.46498 * 119.99788 * 180.02562 * 9 7 2 11 11 C 1.53004 * 109.46829 * 174.37090 * 10 9 7 12 12 C 1.53000 * 115.54928 * 294.94719 * 11 10 9 13 13 C 1.53010 * 109.47138 * 279.32808 * 12 11 10 14 14 N 1.46499 * 109.46904 * 175.45461 * 13 12 11 15 15 C 1.34780 * 119.99723 * 179.97438 * 14 13 12 16 16 O 1.21717 * 120.00132 * 359.97438 * 15 14 13 17 17 C 1.46441 * 119.99880 * 180.02562 * 15 14 13 18 18 S 1.75826 * 125.46184 * 359.97085 * 17 15 14 19 19 C 1.70606 * 91.58419 * 180.02562 * 18 17 15 20 20 C 1.33767 * 110.99955 * 359.97438 * 19 18 17 21 21 C 1.36787 * 125.46102 * 179.97438 * 17 15 14 22 22 Cl 1.73603 * 123.37917 * 0.02562 * 21 17 15 23 23 C 1.52994 * 117.52119 * 80.65188 * 11 10 9 24 24 C 1.53003 * 60.00332 * 107.47859 * 23 11 10 25 25 H 0.97006 * 120.00078 * 359.97438 * 1 2 3 26 26 H 0.97002 * 119.99858 * 359.97438 * 9 7 2 27 27 H 1.08999 * 109.47245 * 54.37047 * 10 9 7 28 28 H 1.08996 * 109.46966 * 294.36360 * 10 9 7 29 29 H 1.08995 * 109.47413 * 159.32896 * 12 11 10 30 30 H 1.08993 * 109.47264 * 39.32614 * 12 11 10 31 31 H 1.08994 * 109.47006 * 55.45376 * 13 12 11 32 32 H 1.08998 * 109.46640 * 295.45534 * 13 12 11 33 33 H 0.96995 * 120.00076 * 0.02562 * 14 13 12 34 34 H 1.08004 * 124.50084 * 179.73705 * 19 18 17 35 35 H 1.08003 * 122.45422 * 179.97438 * 20 19 18 36 36 H 1.09002 * 117.49771 * 214.96907 * 23 11 10 37 37 H 1.09003 * 117.49859 * 359.97438 * 23 11 10 38 38 H 1.08995 * 117.49970 * 252.51336 * 24 23 11 39 39 H 1.08996 * 117.49534 * 107.48917 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4400 0.7001 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0001 9 7 1.3254 -2.3881 0.0005 10 6 2.0579 -3.6568 0.0017 11 6 1.0695 -4.8162 0.1429 12 6 0.3068 -4.8754 1.4680 13 6 1.1940 -5.5132 2.5391 14 7 0.5057 -5.4715 3.8316 15 6 1.1006 -5.9806 4.9286 16 8 2.2096 -6.4755 4.8453 17 6 0.4124 -5.9395 6.2205 18 16 -1.1853 -5.2623 6.5041 19 6 -1.1081 -5.6525 8.1631 20 6 0.0501 -6.2517 8.4613 21 6 0.9094 -6.4217 7.4002 22 17 2.4684 -7.1718 7.5443 23 6 0.3329 -5.2747 -1.1172 24 6 1.4399 -6.1450 -0.5189 25 1 -0.4850 0.8401 0.0004 26 1 0.3554 -2.3880 0.0005 27 1 2.7574 -3.6718 0.8375 28 1 2.6074 -3.7599 -0.9340 29 1 -0.5960 -5.4727 1.3412 30 1 0.0344 -3.8659 1.7758 31 1 2.1320 -4.9625 2.6090 32 1 1.4001 -6.5493 2.2703 33 1 -0.3785 -5.0782 3.8977 34 1 -1.8889 -5.4402 8.8785 35 1 0.2933 -6.5775 9.4619 36 1 -0.6951 -5.6185 -1.0022 37 1 0.5520 -4.7501 -2.0472 38 1 2.3875 -6.1931 -1.0553 39 1 1.1402 -7.0613 -0.0104 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164605022.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:49:12 Heat of formation + Delta-G solvation = 3.950667 kcal Electronic energy + Delta-G solvation = -22488.184153 eV Core-core repulsion = 18969.582101 eV Total energy + Delta-G solvation = -3518.602052 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.92597 -39.60999 -38.82855 -37.09893 -36.13125 -35.72905 -32.77107 -31.95374 -30.27520 -27.82058 -26.24747 -24.66077 -24.49975 -23.07416 -22.31897 -20.68878 -20.19379 -19.50661 -18.90708 -17.51484 -17.06685 -16.84570 -16.60133 -16.26206 -16.05133 -15.64657 -15.20327 -14.95302 -14.68757 -14.52217 -14.49487 -14.09102 -13.84370 -13.76510 -13.19142 -13.01650 -12.79240 -12.57116 -12.53829 -12.30813 -12.26015 -12.14714 -11.92725 -11.88206 -11.81352 -11.14063 -11.05992 -10.89031 -10.56993 -10.30049 -9.90216 -9.53444 -8.96306 -7.93947 -5.21187 -0.72043 0.10752 0.70063 1.16919 1.40076 1.47093 1.47881 1.56415 1.97914 2.04035 2.54876 2.90298 3.38958 3.63725 3.83024 3.85916 3.96115 3.99260 4.07594 4.12166 4.26466 4.41231 4.48952 4.62325 4.66968 4.85214 4.90296 4.93955 4.97093 4.99215 5.09186 5.16038 5.26804 5.33866 5.35479 5.38791 5.49882 6.28664 6.35729 7.03977 7.36019 8.11873 8.38395 9.29187 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.011874 B = 0.002940 C = 0.002672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2357.483652 B = 9521.018425 C =10475.849601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.069 4.069 3 Si 0.968 3.032 4 H -0.287 1.287 5 H -0.292 1.292 6 H -0.275 1.275 7 C -0.247 4.247 8 H 0.068 0.932 9 N -0.735 5.735 10 C 0.188 3.812 11 C -0.140 4.140 12 C -0.078 4.078 13 C 0.136 3.864 14 N -0.715 5.715 15 C 0.579 3.421 16 O -0.553 6.553 17 C -0.306 4.306 18 S 0.291 5.709 19 C -0.201 4.201 20 C -0.158 4.158 21 C 0.008 3.992 22 Cl -0.037 7.037 23 C -0.162 4.162 24 C -0.151 4.151 25 H 0.252 0.748 26 H 0.377 0.623 27 H 0.016 0.984 28 H 0.012 0.988 29 H 0.092 0.908 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.077 0.923 33 H 0.407 0.593 34 H 0.217 0.783 35 H 0.175 0.825 36 H 0.109 0.891 37 H 0.080 0.920 38 H 0.095 0.905 39 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.821 -16.705 15.986 24.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.614 5.614 2 C -0.261 4.261 3 Si 0.797 3.203 4 H -0.214 1.214 5 H -0.219 1.219 6 H -0.200 1.200 7 C -0.379 4.379 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.062 3.938 11 C -0.141 4.141 12 C -0.116 4.116 13 C 0.013 3.987 14 N -0.367 5.367 15 C 0.366 3.634 16 O -0.433 6.433 17 C -0.428 4.428 18 S 0.558 5.442 19 C -0.339 4.339 20 C -0.187 4.187 21 C -0.036 4.036 22 Cl -0.008 7.008 23 C -0.199 4.199 24 C -0.188 4.188 25 H 0.060 0.940 26 H 0.210 0.790 27 H 0.034 0.966 28 H 0.030 0.970 29 H 0.110 0.890 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.243 0.757 34 H 0.234 0.766 35 H 0.193 0.807 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.114 0.886 39 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.824 -16.313 15.005 23.191 hybrid contribution 1.225 0.656 0.821 1.614 sum -5.599 -15.657 15.826 22.955 Atomic orbital electron populations 1.69792 1.06298 1.25984 1.59336 1.25449 0.96387 1.00637 1.03668 0.85227 0.77702 0.79929 0.77422 1.21432 1.21865 1.19976 1.19592 0.91296 0.85617 1.41431 0.91380 1.42415 1.05655 1.00538 1.89119 1.20223 0.92658 0.84174 0.96767 1.21395 1.02309 0.96168 0.94207 1.21120 0.97645 1.01227 0.91605 1.21236 0.95345 1.01181 0.80979 1.45814 1.21533 1.61150 1.08191 1.17125 0.85035 0.78180 0.83039 1.90855 1.20174 1.46421 1.85834 1.24545 1.04322 1.16670 0.97235 1.83121 1.07214 1.51987 1.01911 1.25734 1.02862 1.03304 1.02033 1.19943 0.93427 1.04926 1.00449 1.20728 0.90058 0.99170 0.93607 1.98394 1.24886 1.79564 1.97921 1.23012 0.97989 1.02973 0.95955 1.23063 0.99754 0.93370 1.02650 0.93954 0.79013 0.96601 0.97003 0.88973 0.92120 0.93571 0.90493 0.75658 0.76628 0.80734 0.87227 0.90159 0.88646 0.86704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -58.09 13.06 21.65 0.28 -57.81 16 2 C -0.07 -3.95 5.50 84.87 0.47 -3.48 16 3 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 4 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 5 H -0.29 -13.96 7.11 99.48 0.71 -13.25 16 6 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 7 C -0.25 -14.02 9.99 84.04 0.84 -13.18 16 8 H 0.07 3.78 7.83 -2.91 -0.02 3.76 16 9 N -0.73 -37.31 5.30 -343.45 -1.82 -39.13 16 10 C 0.19 7.73 6.10 86.38 0.53 8.25 16 11 C -0.14 -4.32 1.52 -52.18 -0.08 -4.40 16 12 C -0.08 -2.18 5.24 30.60 0.16 -2.02 16 13 C 0.14 3.82 5.51 86.38 0.48 4.29 16 14 N -0.72 -18.46 5.55 -467.30 -2.59 -21.05 16 15 C 0.58 16.99 7.78 86.38 0.67 17.66 16 16 O -0.55 -20.11 15.09 -4.40 -0.07 -20.17 16 17 C -0.31 -7.14 6.45 24.07 0.16 -6.99 16 18 S 0.29 4.05 22.15 -56.49 -1.25 2.80 16 19 C -0.20 -2.06 10.92 66.80 0.73 -1.33 16 20 C -0.16 -2.29 10.06 21.10 0.21 -2.08 16 21 C 0.01 0.18 6.39 21.78 0.14 0.32 16 22 Cl -0.04 -0.94 27.24 -2.72 -0.07 -1.01 16 23 C -0.16 -4.43 9.90 30.59 0.30 -4.13 16 24 C -0.15 -3.66 9.57 30.60 0.29 -3.37 16 25 H 0.25 14.68 8.31 -92.70 -0.77 13.91 16 26 H 0.38 20.03 7.46 -92.71 -0.69 19.33 16 27 H 0.02 0.69 7.69 -2.39 -0.02 0.67 16 28 H 0.01 0.51 8.09 -2.39 -0.02 0.49 16 29 H 0.09 2.04 7.94 -2.39 -0.02 2.02 16 30 H 0.06 2.04 7.64 -2.39 -0.02 2.02 16 31 H 0.05 1.57 7.69 -2.39 -0.02 1.55 16 32 H 0.08 2.03 7.80 -2.39 -0.02 2.01 16 33 H 0.41 8.49 7.58 -92.71 -0.70 7.79 16 34 H 0.22 0.53 8.06 -2.91 -0.02 0.51 16 35 H 0.18 1.73 8.06 -2.91 -0.02 1.71 16 36 H 0.11 2.54 8.08 -2.39 -0.02 2.52 16 37 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 38 H 0.10 2.29 8.14 -2.39 -0.02 2.27 16 39 H 0.11 2.27 7.98 -2.39 -0.02 2.25 16 Total: -1.00 -72.29 360.66 1.10 -71.19 By element: Atomic # 1 Polarization: 27.47 SS G_CDS: -0.30 Total: 27.17 kcal Atomic # 6 Polarization: -15.36 SS G_CDS: 4.89 Total: -10.46 kcal Atomic # 7 Polarization: -113.86 SS G_CDS: -4.13 Total: -117.99 kcal Atomic # 8 Polarization: -20.11 SS G_CDS: -0.07 Total: -20.17 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 16 Polarization: 4.05 SS G_CDS: -1.25 Total: 2.80 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -0.07 Total: -1.01 kcal Total: -72.29 1.10 -71.19 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164605022.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.142 kcal (2) G-P(sol) polarization free energy of solvation -72.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds