Wall clock time and date at job start Tue Mar 31 2020 14:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 C 1.52994 * 109.46968 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47171 * 179.97438 * 4 3 2 6 6 C 1.36922 * 120.00266 * 274.73681 * 5 4 3 7 7 H 1.07997 * 119.99598 * 326.39889 * 6 5 4 8 8 C 1.38813 * 119.99889 * 146.40021 * 6 5 4 9 9 N 1.31545 * 119.99833 * 154.58688 * 8 6 5 10 10 Si 1.86803 * 120.00230 * 334.57792 * 8 6 5 11 11 H 1.48501 * 109.46697 * 89.75591 * 10 8 6 12 12 H 1.48498 * 109.47178 * 209.75502 * 10 8 6 13 13 H 1.48496 * 109.47122 * 329.75763 * 10 8 6 14 14 C 1.38190 * 120.00095 * 94.73551 * 5 4 3 15 15 N 1.33093 * 120.84025 * 276.24561 * 14 5 4 16 16 C 1.32103 * 121.02632 * 180.02562 * 15 14 5 17 17 Cl 1.73604 * 118.64689 * 179.71776 * 16 15 14 18 18 N 1.31740 * 122.70430 * 359.97438 * 16 15 14 19 19 C 1.33135 * 120.72555 * 0.02562 * 18 16 15 20 20 N 1.36792 * 134.27799 * 180.02562 * 19 18 16 21 21 H 0.97001 * 124.99573 * 359.95186 * 20 19 18 22 22 C 1.37227 * 110.00685 * 179.97438 * 20 19 18 23 23 C 1.34446 * 109.78633 * 0.02562 * 22 20 19 24 24 Cl 1.73594 * 126.59381 * 179.97438 * 23 22 20 25 25 C 1.40384 * 120.83990 * 96.26563 * 14 5 4 26 26 H 1.09005 * 109.46686 * 60.00335 * 1 2 3 27 27 H 1.09001 * 109.46606 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47419 * 300.00242 * 1 2 3 29 29 H 1.08995 * 109.47419 * 239.99757 * 2 1 3 30 30 H 1.09005 * 109.46686 * 119.99665 * 2 1 3 31 31 H 1.09004 * 109.47270 * 59.99997 * 3 2 1 32 32 H 1.08994 * 109.47028 * 299.99851 * 3 2 1 33 33 H 1.08997 * 109.47340 * 60.00381 * 4 3 2 34 34 H 1.09001 * 109.47479 * 299.99672 * 4 3 2 35 35 H 0.97000 * 120.00377 * 179.97438 * 9 8 6 36 36 H 1.07995 * 125.10650 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1947 3.5012 -1.1820 7 1 4.4798 2.9708 -2.0785 8 6 3.9665 4.8697 -1.2280 9 7 4.5456 5.6022 -2.1545 10 14 2.8370 5.6710 0.0256 11 1 3.6294 6.0887 1.2101 12 1 2.1891 6.8614 -0.5814 13 1 1.7946 4.6999 0.4448 14 6 4.3812 3.4430 1.1925 15 7 3.4422 4.0230 1.9363 16 6 3.7469 4.6164 3.0765 17 17 2.4743 5.3598 3.9939 18 7 4.9775 4.6715 3.5437 19 6 5.9857 4.1202 2.8713 20 7 7.3322 4.0131 3.0871 21 1 7.8022 4.3690 3.8574 22 6 7.9204 3.3285 2.0535 23 6 6.9877 2.9776 1.1509 24 17 7.2527 2.0999 -0.3232 25 6 5.7081 3.4766 1.6496 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9287 -0.8891 34 1 3.9330 0.9289 0.8909 35 1 4.3860 6.5585 -2.1869 36 1 8.9743 3.1058 1.9761 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167133136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:17 Heat of formation + Delta-G solvation = 100.451613 kcal Electronic energy + Delta-G solvation = -24199.538323 eV Core-core repulsion = 20579.536816 eV Total energy + Delta-G solvation = -3620.001507 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 1.76 seconds Orbital eigenvalues (eV) -41.45024 -38.56386 -36.96845 -36.14497 -35.79651 -34.33938 -32.54515 -31.67016 -30.51750 -28.88880 -28.00371 -24.87374 -23.80523 -22.91690 -21.46946 -20.56804 -20.19939 -19.00152 -17.92283 -16.52523 -15.88999 -15.71842 -15.07058 -14.92982 -14.62568 -14.17749 -13.85734 -13.57407 -13.45254 -13.34714 -13.10715 -12.44386 -12.15790 -12.02176 -11.60295 -11.35824 -11.15308 -11.07142 -10.92960 -10.76003 -10.61321 -10.53780 -10.33904 -10.15033 -9.93851 -9.89633 -9.48681 -8.90561 -8.52695 -8.33798 -7.65547 -7.47325 -6.37470 -3.69705 1.12920 1.71509 1.79151 2.56161 2.72828 3.24728 3.40175 3.54377 3.82204 4.16773 4.30857 4.48064 4.90667 4.99990 5.09870 5.13703 5.38117 5.43018 5.53140 5.58492 5.74731 5.84940 6.05518 6.13505 6.21141 6.28209 6.32645 6.41095 6.44637 6.54107 6.86256 6.94289 7.08623 7.18181 7.68456 7.71143 7.96373 8.56009 8.63705 9.28493 9.54400 10.69913 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.008660 B = 0.007646 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.391720 B = 3660.951905 C = 4646.033971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.140 4.140 4 C 0.140 3.860 5 N -0.512 5.512 6 C -0.241 4.241 7 H 0.102 0.898 8 C 0.039 3.961 9 N -0.857 5.857 10 Si 0.900 3.100 11 H -0.294 1.294 12 H -0.314 1.314 13 H -0.242 1.242 14 C 0.484 3.516 15 N -0.552 5.552 16 C 0.413 3.587 17 Cl -0.003 7.003 18 N -0.559 5.559 19 C 0.339 3.661 20 N -0.565 5.565 21 H 0.422 0.578 22 C 0.033 3.967 23 C -0.056 4.056 24 Cl -0.021 7.021 25 C -0.203 4.203 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.051 0.949 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.045 0.955 35 H 0.272 0.728 36 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 -7.224 8.141 11.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.160 4.160 3 C -0.180 4.180 4 C 0.017 3.983 5 N -0.224 5.224 6 C -0.369 4.369 7 H 0.120 0.880 8 C -0.168 4.168 9 N -0.491 5.491 10 Si 0.732 3.268 11 H -0.222 1.222 12 H -0.245 1.245 13 H -0.166 1.166 14 C 0.246 3.754 15 N -0.281 5.281 16 C 0.116 3.884 17 Cl 0.024 6.976 18 N -0.287 5.287 19 C 0.100 3.900 20 N -0.174 5.174 21 H 0.260 0.740 22 C -0.093 4.093 23 C -0.092 4.092 24 Cl 0.008 6.992 25 C -0.217 4.217 26 H 0.072 0.928 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.064 0.936 35 H 0.082 0.918 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 2.688 -6.701 8.479 11.137 hybrid contribution 0.135 0.769 0.510 0.933 sum 2.822 -5.931 8.989 11.134 Atomic orbital electron populations 1.21752 0.96536 1.00587 1.01784 1.21493 0.95374 0.97940 1.01146 1.22173 0.97683 0.95066 1.03034 1.21376 0.92351 0.84490 1.00117 1.41717 1.69452 1.11292 0.99943 1.19000 1.40943 0.91242 0.85697 0.88028 1.25639 0.97295 0.96701 0.97191 1.69885 1.38073 1.06581 1.34605 0.86436 0.83829 0.78193 0.78303 1.22222 1.24455 1.16632 1.17361 0.84804 0.88240 0.85025 1.68187 1.39184 1.14369 1.06373 1.21858 0.85861 0.92899 0.87800 1.98368 1.47376 1.80050 1.71758 1.66396 0.97866 1.26880 1.37571 1.17816 0.85356 0.95505 0.91338 1.41221 1.04013 1.50050 1.22138 0.73994 1.21434 0.98034 1.01047 0.88774 1.20534 0.92063 1.04877 0.91677 1.98337 1.96041 1.73257 1.31571 1.20509 0.95687 1.08340 0.97179 0.92832 0.93549 0.93035 0.92370 0.92812 0.91974 0.91313 0.91479 0.93632 0.91847 0.79881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 37.16 0.37 -1.56 16 2 C -0.12 -1.71 5.93 -26.73 -0.16 -1.87 16 3 C -0.14 -2.50 5.52 -26.73 -0.15 -2.65 16 4 C 0.14 2.65 5.66 -4.05 -0.02 2.63 16 5 N -0.51 -11.58 2.25 -114.73 -0.26 -11.84 16 6 C -0.24 -6.17 9.89 -15.07 -0.15 -6.32 16 7 H 0.10 2.71 8.06 -52.49 -0.42 2.28 16 8 C 0.04 1.07 5.29 -17.46 -0.09 0.98 16 9 N -0.86 -24.67 13.96 55.49 0.77 -23.89 16 10 Si 0.90 23.77 23.87 -169.99 -4.06 19.71 16 11 H -0.29 -8.00 5.39 56.52 0.30 -7.70 16 12 H -0.31 -8.50 7.11 56.52 0.40 -8.10 16 13 H -0.24 -6.36 6.77 56.52 0.38 -5.97 16 14 C 0.48 11.18 4.33 -154.74 -0.67 10.51 16 15 N -0.55 -12.95 5.97 -10.73 -0.06 -13.02 16 16 C 0.41 9.05 6.64 -91.93 -0.61 8.44 16 17 Cl 0.00 -0.06 29.25 -51.86 -1.52 -1.57 16 18 N -0.56 -11.62 10.42 -10.94 -0.11 -11.74 16 19 C 0.34 6.61 8.48 -155.85 -1.32 5.29 16 20 N -0.56 -8.14 6.04 -12.05 -0.07 -8.21 16 21 H 0.42 4.42 8.96 -40.82 -0.37 4.06 16 22 C 0.03 0.45 11.83 -16.48 -0.19 0.26 16 23 C -0.06 -1.01 6.91 -37.76 -0.26 -1.27 16 24 Cl -0.02 -0.37 29.27 -51.86 -1.52 -1.89 16 25 C -0.20 -4.32 6.37 -104.94 -0.67 -4.99 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 33 H 0.07 1.20 8.08 -51.93 -0.42 0.79 16 34 H 0.05 0.81 8.01 -51.93 -0.42 0.40 16 35 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.18 1.69 8.06 -52.49 -0.42 1.27 16 LS Contribution 333.54 15.07 5.03 5.03 Total: -1.00 -30.79 333.54 -9.99 -40.77 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -4.26 Total: -2.80 kcal Atomic # 6 Polarization: 13.38 SS G_CDS: -3.93 Total: 9.46 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: 0.27 Total: -68.70 kcal Atomic # 14 Polarization: 23.77 SS G_CDS: -4.06 Total: 19.71 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -3.03 Total: -3.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -30.79 -9.99 -40.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167133136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.223 kcal (2) G-P(sol) polarization free energy of solvation -30.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.771 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds