Wall clock time and date at job start Tue Mar 31 2020 14:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53001 * 109.46891 * 2 1 4 4 C 1.52994 * 109.46968 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47171 * 179.97438 * 4 3 2 6 6 C 1.36922 * 120.00266 * 274.73681 * 5 4 3 7 7 H 1.07997 * 119.99598 * 326.39889 * 6 5 4 8 8 C 1.38813 * 119.99889 * 146.40021 * 6 5 4 9 9 N 1.31545 * 119.99833 * 154.58688 * 8 6 5 10 10 Si 1.86803 * 120.00230 * 334.57792 * 8 6 5 11 11 H 1.48501 * 109.46697 * 89.75591 * 10 8 6 12 12 H 1.48498 * 109.47178 * 209.75502 * 10 8 6 13 13 H 1.48496 * 109.47122 * 329.75763 * 10 8 6 14 14 C 1.38190 * 120.00095 * 94.73551 * 5 4 3 15 15 N 1.33093 * 120.84025 * 276.24561 * 14 5 4 16 16 C 1.32103 * 121.02632 * 180.02562 * 15 14 5 17 17 Cl 1.73604 * 118.64689 * 179.71776 * 16 15 14 18 18 N 1.31740 * 122.70430 * 359.97438 * 16 15 14 19 19 C 1.33135 * 120.72555 * 0.02562 * 18 16 15 20 20 N 1.36792 * 134.27799 * 180.02562 * 19 18 16 21 21 H 0.97001 * 124.99573 * 359.95186 * 20 19 18 22 22 C 1.37227 * 110.00685 * 179.97438 * 20 19 18 23 23 C 1.34446 * 109.78633 * 0.02562 * 22 20 19 24 24 Cl 1.73594 * 126.59381 * 179.97438 * 23 22 20 25 25 C 1.40384 * 120.83990 * 96.26563 * 14 5 4 26 26 H 1.09005 * 109.46686 * 60.00335 * 1 2 3 27 27 H 1.09001 * 109.46606 * 179.97438 * 1 2 3 28 28 H 1.08995 * 109.47419 * 300.00242 * 1 2 3 29 29 H 1.08995 * 109.47419 * 239.99757 * 2 1 3 30 30 H 1.09005 * 109.46686 * 119.99665 * 2 1 3 31 31 H 1.09004 * 109.47270 * 59.99997 * 3 2 1 32 32 H 1.08994 * 109.47028 * 299.99851 * 3 2 1 33 33 H 1.08997 * 109.47340 * 60.00381 * 4 3 2 34 34 H 1.09001 * 109.47479 * 299.99672 * 4 3 2 35 35 H 0.97000 * 120.00377 * 179.97438 * 9 8 6 36 36 H 1.07995 * 125.10650 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5699 1.4426 0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1947 3.5012 -1.1820 7 1 4.4798 2.9708 -2.0785 8 6 3.9665 4.8697 -1.2280 9 7 4.5456 5.6022 -2.1545 10 14 2.8370 5.6710 0.0256 11 1 3.6294 6.0887 1.2101 12 1 2.1891 6.8614 -0.5814 13 1 1.7946 4.6999 0.4448 14 6 4.3812 3.4430 1.1925 15 7 3.4422 4.0230 1.9363 16 6 3.7469 4.6164 3.0765 17 17 2.4743 5.3598 3.9939 18 7 4.9775 4.6715 3.5437 19 6 5.9857 4.1202 2.8713 20 7 7.3322 4.0131 3.0871 21 1 7.8022 4.3690 3.8574 22 6 7.9204 3.3285 2.0535 23 6 6.9877 2.9776 1.1509 24 17 7.2527 2.0999 -0.3232 25 6 5.7081 3.4766 1.6496 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3632 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.6767 1.9564 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 3.9337 0.9287 -0.8891 34 1 3.9330 0.9289 0.8909 35 1 4.3860 6.5585 -2.1869 36 1 8.9743 3.1058 1.9761 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167133136.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:16 Heat of formation + Delta-G solvation = 82.605996 kcal Electronic energy + Delta-G solvation = -24200.312167 eV Core-core repulsion = 20579.536816 eV Total energy + Delta-G solvation = -3620.775351 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.02329 -40.15049 -38.60238 -37.71469 -37.16148 -35.73126 -34.36873 -33.38359 -32.01532 -30.32099 -29.52065 -26.65095 -25.30928 -24.52463 -22.97339 -21.90765 -21.63449 -20.63800 -19.64935 -18.08929 -17.68045 -17.35216 -16.70290 -16.37510 -16.24125 -15.81101 -15.30479 -15.14475 -14.87774 -14.76893 -14.63139 -14.23511 -13.60637 -13.39716 -13.15273 -12.91437 -12.79031 -12.66903 -12.57551 -12.38712 -12.13532 -12.01807 -11.87634 -11.76185 -11.45181 -11.32615 -11.21763 -10.79580 -10.31765 -10.03911 -9.30487 -9.02525 -8.37468 -5.71228 -0.46959 0.01444 0.17734 1.21723 1.29413 1.37334 1.39793 1.72193 1.83042 2.34436 2.52965 2.60810 3.01888 3.47067 3.50723 3.74904 4.01002 4.12893 4.18555 4.35975 4.42725 4.51020 4.59912 4.79707 4.89165 4.95553 5.03483 5.07645 5.17139 5.37736 5.43771 5.49373 5.62478 5.64076 5.79634 6.03878 6.35325 6.77219 6.86713 7.42989 7.70522 8.76216 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.008660 B = 0.007646 C = 0.006025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.391720 B = 3660.951905 C = 4646.033971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.114 4.114 3 C -0.132 4.132 4 C 0.148 3.852 5 N -0.534 5.534 6 C -0.225 4.225 7 H 0.085 0.915 8 C 0.000 4.000 9 N -0.910 5.910 10 Si 0.936 3.064 11 H -0.308 1.308 12 H -0.335 1.335 13 H -0.250 1.250 14 C 0.487 3.513 15 N -0.572 5.572 16 C 0.386 3.614 17 Cl 0.019 6.981 18 N -0.540 5.540 19 C 0.321 3.679 20 N -0.539 5.539 21 H 0.447 0.553 22 C 0.101 3.899 23 C -0.105 4.105 24 Cl -0.021 7.021 25 C -0.219 4.219 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.039 0.961 32 H 0.045 0.955 33 H 0.075 0.925 34 H 0.056 0.944 35 H 0.263 0.737 36 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.655 -9.116 10.725 15.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.152 4.152 3 C -0.171 4.171 4 C 0.025 3.975 5 N -0.250 5.250 6 C -0.353 4.353 7 H 0.102 0.898 8 C -0.200 4.200 9 N -0.551 5.551 10 Si 0.772 3.228 11 H -0.238 1.238 12 H -0.268 1.268 13 H -0.174 1.174 14 C 0.249 3.751 15 N -0.300 5.300 16 C 0.089 3.911 17 Cl 0.047 6.953 18 N -0.266 5.266 19 C 0.080 3.920 20 N -0.150 5.150 21 H 0.290 0.710 22 C -0.026 4.026 23 C -0.140 4.140 24 Cl 0.008 6.992 25 C -0.233 4.233 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 5.021 -8.588 11.178 14.964 hybrid contribution -0.382 1.178 0.170 1.250 sum 4.640 -7.410 11.348 14.326 Atomic orbital electron populations 1.21740 0.95566 1.01992 1.01241 1.21436 0.96202 0.95156 1.02379 1.22054 0.97049 0.97320 1.00722 1.21350 0.92820 0.82306 1.00979 1.41665 1.72251 1.12060 0.99056 1.18632 1.39696 0.90382 0.86613 0.89783 1.25807 0.98834 0.97539 0.97839 1.69939 1.41720 1.06094 1.37392 0.85859 0.83104 0.76837 0.76995 1.23792 1.26750 1.17438 1.17811 0.85829 0.86118 0.85372 1.68074 1.40099 1.14713 1.07072 1.22183 0.86877 0.93794 0.88239 1.98367 1.46490 1.79497 1.70972 1.66491 0.97877 1.25218 1.37014 1.18095 0.87121 0.95760 0.91023 1.41351 1.01953 1.48728 1.22982 0.71010 1.22442 0.99615 0.95142 0.85403 1.20738 0.91698 1.07983 0.93542 1.98338 1.95832 1.73310 1.31769 1.20980 0.96191 1.07971 0.98136 0.93394 0.91116 0.93660 0.91059 0.91546 0.94248 0.93632 0.90698 0.92514 0.92807 0.73721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.62 9.91 71.98 0.71 -2.91 16 2 C -0.11 -3.04 5.93 30.60 0.18 -2.86 16 3 C -0.13 -4.75 5.52 30.59 0.17 -4.58 16 4 C 0.15 5.57 5.66 86.38 0.49 6.06 16 5 N -0.53 -24.44 2.25 -516.90 -1.16 -25.60 16 6 C -0.22 -11.87 9.89 84.04 0.83 -11.04 16 7 H 0.08 4.68 8.06 -2.91 -0.02 4.65 16 8 C 0.00 0.01 5.29 84.87 0.45 0.46 16 9 N -0.91 -55.29 13.96 21.65 0.30 -54.98 16 10 Si 0.94 51.40 23.87 68.60 1.64 53.04 16 11 H -0.31 -17.20 5.39 99.48 0.54 -16.66 16 12 H -0.34 -19.11 7.11 99.48 0.71 -18.40 16 13 H -0.25 -13.64 6.77 99.48 0.67 -12.96 16 14 C 0.49 22.37 4.33 133.44 0.58 22.94 16 15 N -0.57 -26.84 5.97 -187.87 -1.12 -27.96 16 16 C 0.39 16.58 6.64 180.81 1.20 17.78 16 17 Cl 0.02 0.70 29.25 -2.72 -0.08 0.62 16 18 N -0.54 -21.30 10.42 -188.52 -1.97 -23.26 16 19 C 0.32 11.51 8.48 134.00 1.14 12.65 16 20 N -0.54 -12.61 6.04 -192.05 -1.16 -13.77 16 21 H 0.45 6.55 8.96 -92.71 -0.83 5.72 16 22 C 0.10 2.18 11.83 82.98 0.98 3.17 16 23 C -0.10 -3.43 6.91 23.45 0.16 -3.27 16 24 Cl -0.02 -0.71 29.27 -2.72 -0.08 -0.78 16 25 C -0.22 -8.88 6.37 -20.07 -0.13 -9.00 16 26 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 27 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 2.66 8.08 -2.39 -0.02 2.64 16 34 H 0.06 1.97 8.01 -2.39 -0.02 1.95 16 35 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 36 H 0.25 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -72.05 333.54 3.23 -68.82 By element: Atomic # 1 Polarization: -5.61 SS G_CDS: 0.09 Total: -5.51 kcal Atomic # 6 Polarization: 22.63 SS G_CDS: 6.76 Total: 29.39 kcal Atomic # 7 Polarization: -140.47 SS G_CDS: -5.11 Total: -145.58 kcal Atomic # 14 Polarization: 51.40 SS G_CDS: 1.64 Total: 53.04 kcal Atomic # 17 Polarization: 0.00 SS G_CDS: -0.16 Total: -0.16 kcal Total: -72.05 3.23 -68.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167133136.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.426 kcal (2) G-P(sol) polarization free energy of solvation -72.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds