Wall clock time and date at job start Tue Mar 31 2020 15:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99976 * 2 1 4 4 H 1.48507 * 109.46881 * 239.99661 * 3 2 1 5 5 H 1.48489 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47023 * 120.00104 * 3 2 1 7 7 C 1.38817 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99797 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99919 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47100 * 174.37108 * 10 9 7 12 12 C 1.52999 * 115.55002 * 294.95475 * 11 10 9 13 13 C 1.53002 * 109.47128 * 279.32351 * 12 11 10 14 14 N 1.46501 * 109.47077 * 175.45766 * 13 12 11 15 15 C 1.34780 * 119.99777 * 179.97438 * 14 13 12 16 16 O 1.21703 * 119.99856 * 0.02562 * 15 14 13 17 17 C 1.46572 * 119.99842 * 180.02562 * 15 14 13 18 18 C 1.36673 * 125.45254 * 179.97438 * 17 15 14 19 19 C 1.37533 * 113.28631 * 179.97438 * 18 17 15 20 20 Cl 1.73591 * 122.45728 * 179.97438 * 19 18 17 21 21 C 1.33869 * 115.08077 * 0.02562 * 19 18 17 22 22 S 1.70621 * 110.96042 * 359.72288 * 21 19 18 23 23 C 1.53003 * 117.51784 * 80.65630 * 11 10 9 24 24 C 1.53000 * 60.00085 * 107.47708 * 23 11 10 25 25 H 0.96996 * 119.99452 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00258 * 0.02562 * 9 7 2 27 27 H 1.09006 * 109.46711 * 54.37460 * 10 9 7 28 28 H 1.08995 * 109.47447 * 294.37565 * 10 9 7 29 29 H 1.09005 * 109.46925 * 159.32501 * 12 11 10 30 30 H 1.08999 * 109.47442 * 39.32555 * 12 11 10 31 31 H 1.09000 * 109.47005 * 55.45909 * 13 12 11 32 32 H 1.09000 * 109.47328 * 295.45976 * 13 12 11 33 33 H 0.96994 * 119.99763 * 0.02562 * 14 13 12 34 34 H 1.08000 * 123.35558 * 0.04094 * 18 17 15 35 35 H 1.07997 * 124.52010 * 179.97438 * 21 19 18 36 36 H 1.08996 * 117.50174 * 214.97010 * 23 11 10 37 37 H 1.08999 * 117.49601 * 359.97438 * 23 11 10 38 38 H 1.08994 * 117.50351 * 252.51496 * 24 23 11 39 39 H 1.08998 * 117.49676 * 107.48584 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0697 -4.8162 0.1420 12 6 0.3079 -4.8760 1.4676 13 6 1.1958 -5.5142 2.5377 14 7 0.5083 -5.4731 3.8308 15 6 1.1040 -5.9828 4.9271 16 8 2.2132 -6.4766 4.8430 17 6 0.4160 -5.9422 6.2207 18 6 0.9135 -6.4245 7.3987 19 6 0.0563 -6.2555 8.4608 20 17 0.4488 -6.7819 10.0678 21 6 -1.1035 -5.6562 8.1642 22 16 -1.1785 -5.2585 6.5067 23 6 0.3322 -5.2742 -1.1179 24 6 1.4397 -6.1447 -0.5207 25 1 -0.4849 0.8401 -0.0004 26 1 0.3555 -2.3880 -0.0002 27 1 2.7580 -3.6722 0.8359 28 1 2.6069 -3.7595 -0.9355 29 1 -0.5951 -5.4732 1.3410 30 1 0.0357 -3.8666 1.7760 31 1 2.1339 -4.9635 2.6073 32 1 1.4018 -6.5502 2.2685 33 1 -0.3758 -5.0799 3.8976 34 1 1.8836 -6.8909 7.4870 35 1 -1.8854 -5.4483 8.8795 36 1 -0.6957 -5.6181 -1.0025 37 1 0.5507 -4.7492 -2.0478 38 1 2.3870 -6.1925 -1.0577 39 1 1.1404 -7.0612 -0.0123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167389573.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:50 Heat of formation + Delta-G solvation = 19.766269 kcal Electronic energy + Delta-G solvation = -22221.760153 eV Core-core repulsion = 18703.843917 eV Total energy + Delta-G solvation = -3517.916236 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.95384 -38.52595 -38.07630 -36.34153 -34.93680 -33.92462 -31.00228 -30.74492 -29.44364 -26.11630 -25.48039 -23.46111 -22.76378 -21.93314 -21.33268 -19.86968 -19.18313 -18.23609 -17.06824 -16.70566 -16.09426 -15.72250 -15.59996 -15.09701 -14.52350 -14.44886 -14.01795 -13.85130 -13.57891 -13.36639 -13.18484 -13.08840 -12.69674 -12.26757 -11.96919 -11.78351 -11.70890 -11.48828 -11.23951 -11.15205 -10.97872 -10.82970 -10.65524 -10.25568 -10.13398 -9.92135 -9.67096 -9.41311 -9.34748 -9.12459 -8.87088 -8.84845 -6.90925 -5.76682 -3.04442 0.02428 0.82824 1.16511 1.78180 2.12525 2.95490 3.00591 3.44302 3.48680 3.49545 4.03345 4.38465 4.60999 4.64030 4.77686 4.97883 5.05411 5.12143 5.21816 5.27837 5.44665 5.54096 5.58164 5.63925 5.65574 5.71632 5.89773 6.09535 6.15507 6.21254 6.32204 6.41229 6.44809 6.52068 6.74721 6.83100 7.29519 7.70085 7.98504 8.42639 9.54246 10.12284 10.48142 11.46113 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.002621 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.951449 B =10679.425769 C =12014.055079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.014 4.014 3 Si 0.906 3.094 4 H -0.286 1.286 5 H -0.291 1.291 6 H -0.286 1.286 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.727 5.727 10 C 0.187 3.813 11 C -0.119 4.119 12 C -0.092 4.092 13 C 0.125 3.875 14 N -0.720 5.720 15 C 0.589 3.411 16 O -0.525 6.525 17 C -0.253 4.253 18 C -0.054 4.054 19 C -0.060 4.060 20 Cl -0.047 7.047 21 C -0.234 4.234 22 S 0.258 5.742 23 C -0.164 4.164 24 C -0.177 4.177 25 H 0.255 0.745 26 H 0.385 0.615 27 H 0.027 0.973 28 H 0.017 0.983 29 H 0.063 0.937 30 H 0.088 0.912 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.164 0.836 35 H 0.180 0.820 36 H 0.089 0.911 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.373 -15.927 14.473 22.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.209 4.209 3 Si 0.737 3.263 4 H -0.213 1.213 5 H -0.217 1.217 6 H -0.213 1.213 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.371 5.371 10 C 0.060 3.940 11 C -0.120 4.120 12 C -0.130 4.130 13 C 0.003 3.997 14 N -0.371 5.371 15 C 0.374 3.626 16 O -0.403 6.403 17 C -0.374 4.374 18 C -0.087 4.087 19 C -0.100 4.100 20 Cl -0.019 7.019 21 C -0.373 4.373 22 S 0.525 5.475 23 C -0.201 4.201 24 C -0.215 4.215 25 H 0.065 0.935 26 H 0.218 0.782 27 H 0.045 0.955 28 H 0.035 0.965 29 H 0.082 0.918 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.181 0.819 35 H 0.198 0.802 36 H 0.107 0.893 37 H 0.114 0.886 38 H 0.111 0.889 39 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -5.496 -15.479 13.611 21.332 hybrid contribution 0.720 0.472 1.254 1.521 sum -4.775 -15.006 14.864 21.655 Atomic orbital electron populations 1.69648 1.05052 1.25672 1.57907 1.24710 0.95515 0.97587 1.03126 0.86284 0.78539 0.83602 0.77870 1.21321 1.21717 1.21288 1.19188 0.90997 0.84182 1.42543 0.91331 1.42281 1.05877 0.99627 1.89353 1.20189 0.91905 0.84183 0.97759 1.21551 1.01775 0.96080 0.92616 1.21270 0.96858 1.02364 0.92504 1.21456 0.96545 1.01389 0.80338 1.45909 1.21239 1.61128 1.08799 1.16794 0.85164 0.78583 0.82085 1.90854 1.18811 1.45326 1.85278 1.24627 1.01298 1.12937 0.98562 1.20507 1.00915 0.98416 0.88885 1.19539 0.95785 1.06185 0.88522 1.98376 1.94030 1.89197 1.20269 1.25279 1.02356 1.06600 1.03024 1.83275 1.12128 1.52983 0.99145 1.22965 0.96455 1.03048 0.97638 1.22981 1.00092 0.94013 1.04421 0.93541 0.78163 0.95535 0.96520 0.91828 0.89323 0.90476 0.91289 0.76802 0.81863 0.80242 0.89303 0.88567 0.88896 0.89229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.69 13.06 55.49 0.72 -26.97 16 2 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 3 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 4 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 9 N -0.73 -17.88 5.30 -59.91 -0.32 -18.20 16 10 C 0.19 3.71 6.10 -4.04 -0.02 3.68 16 11 C -0.12 -1.84 1.52 -154.51 -0.23 -2.07 16 12 C -0.09 -1.28 5.24 -26.73 -0.14 -1.42 16 13 C 0.13 1.69 5.51 -4.04 -0.02 1.67 16 14 N -0.72 -8.85 5.55 -61.65 -0.34 -9.19 16 15 C 0.59 8.03 7.78 -12.90 -0.10 7.93 16 16 O -0.52 -8.95 16.84 5.19 0.09 -8.86 16 17 C -0.25 -2.79 6.45 -36.79 -0.24 -3.03 16 18 C -0.05 -0.57 9.89 -40.40 -0.40 -0.97 16 19 C -0.06 -0.55 6.25 -41.37 -0.26 -0.81 16 20 Cl -0.05 -0.41 29.10 -51.86 -1.51 -1.92 16 21 C -0.23 -1.79 10.77 29.20 0.31 -1.48 16 22 S 0.26 2.03 22.15 -107.50 -2.38 -0.35 16 23 C -0.16 -2.33 9.90 -26.73 -0.26 -2.59 16 24 C -0.18 -2.28 9.57 -26.73 -0.26 -2.54 16 25 H 0.25 7.34 8.31 -40.82 -0.34 7.01 16 26 H 0.38 9.88 7.46 -40.82 -0.30 9.57 16 27 H 0.03 0.54 7.69 -51.93 -0.40 0.14 16 28 H 0.02 0.34 8.09 -51.93 -0.42 -0.08 16 29 H 0.06 0.75 7.94 -51.93 -0.41 0.34 16 30 H 0.09 1.44 7.64 -51.93 -0.40 1.04 16 31 H 0.08 1.21 7.69 -51.93 -0.40 0.81 16 32 H 0.07 0.90 7.80 -51.93 -0.41 0.49 16 33 H 0.40 4.02 7.58 -40.82 -0.31 3.71 16 34 H 0.16 1.71 8.06 -52.49 -0.42 1.29 16 35 H 0.18 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.09 1.13 8.08 -51.93 -0.42 0.71 16 37 H 0.10 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 39 H 0.09 1.01 7.98 -51.93 -0.41 0.60 16 LS Contribution 363.84 15.07 5.48 5.48 Total: -1.00 -31.80 363.84 -10.27 -42.06 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: -5.12 Total: 9.49 kcal Atomic # 6 Polarization: -6.97 SS G_CDS: -1.87 Total: -8.84 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 0.07 Total: -54.36 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 2.03 SS G_CDS: -2.38 Total: -0.35 kcal Atomic # 17 Polarization: -0.41 SS G_CDS: -1.51 Total: -1.92 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -31.80 -10.27 -42.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167389573.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.830 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.266 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds