Wall clock time and date at job start Tue Mar 31 2020 15:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86799 * 119.99976 * 2 1 4 4 H 1.48507 * 109.46881 * 239.99661 * 3 2 1 5 5 H 1.48489 * 109.47307 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47023 * 120.00104 * 3 2 1 7 7 C 1.38817 * 119.99774 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99797 * 180.02562 * 7 2 1 9 9 N 1.36932 * 119.99855 * 0.02562 * 7 2 1 10 10 C 1.46503 * 119.99919 * 179.97438 * 9 7 2 11 11 C 1.53000 * 109.47100 * 174.37108 * 10 9 7 12 12 C 1.52999 * 115.55002 * 294.95475 * 11 10 9 13 13 C 1.53002 * 109.47128 * 279.32351 * 12 11 10 14 14 N 1.46501 * 109.47077 * 175.45766 * 13 12 11 15 15 C 1.34780 * 119.99777 * 179.97438 * 14 13 12 16 16 O 1.21703 * 119.99856 * 0.02562 * 15 14 13 17 17 C 1.46572 * 119.99842 * 180.02562 * 15 14 13 18 18 C 1.36673 * 125.45254 * 179.97438 * 17 15 14 19 19 C 1.37533 * 113.28631 * 179.97438 * 18 17 15 20 20 Cl 1.73591 * 122.45728 * 179.97438 * 19 18 17 21 21 C 1.33869 * 115.08077 * 0.02562 * 19 18 17 22 22 S 1.70621 * 110.96042 * 359.72288 * 21 19 18 23 23 C 1.53003 * 117.51784 * 80.65630 * 11 10 9 24 24 C 1.53000 * 60.00085 * 107.47708 * 23 11 10 25 25 H 0.96996 * 119.99452 * 0.02562 * 1 2 3 26 26 H 0.97003 * 120.00258 * 0.02562 * 9 7 2 27 27 H 1.09006 * 109.46711 * 54.37460 * 10 9 7 28 28 H 1.08995 * 109.47447 * 294.37565 * 10 9 7 29 29 H 1.09005 * 109.46925 * 159.32501 * 12 11 10 30 30 H 1.08999 * 109.47442 * 39.32555 * 12 11 10 31 31 H 1.09000 * 109.47005 * 55.45909 * 13 12 11 32 32 H 1.09000 * 109.47328 * 295.45976 * 13 12 11 33 33 H 0.96994 * 119.99763 * 0.02562 * 14 13 12 34 34 H 1.08000 * 123.35558 * 0.04094 * 18 17 15 35 35 H 1.07997 * 124.52010 * 179.97438 * 21 19 18 36 36 H 1.08996 * 117.50174 * 214.97010 * 23 11 10 37 37 H 1.08999 * 117.49601 * 359.97438 * 23 11 10 38 38 H 1.08994 * 117.50351 * 252.51496 * 24 23 11 39 39 H 1.08998 * 117.49676 * 107.48584 * 24 23 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6964 1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3255 -2.3880 0.0005 10 6 2.0580 -3.6568 0.0005 11 6 1.0697 -4.8162 0.1420 12 6 0.3079 -4.8760 1.4676 13 6 1.1958 -5.5142 2.5377 14 7 0.5083 -5.4731 3.8308 15 6 1.1040 -5.9828 4.9271 16 8 2.2132 -6.4766 4.8430 17 6 0.4160 -5.9422 6.2207 18 6 0.9135 -6.4245 7.3987 19 6 0.0563 -6.2555 8.4608 20 17 0.4488 -6.7819 10.0678 21 6 -1.1035 -5.6562 8.1642 22 16 -1.1785 -5.2585 6.5067 23 6 0.3322 -5.2742 -1.1179 24 6 1.4397 -6.1447 -0.5207 25 1 -0.4849 0.8401 -0.0004 26 1 0.3555 -2.3880 -0.0002 27 1 2.7580 -3.6722 0.8359 28 1 2.6069 -3.7595 -0.9355 29 1 -0.5951 -5.4732 1.3410 30 1 0.0357 -3.8666 1.7760 31 1 2.1339 -4.9635 2.6073 32 1 1.4018 -6.5502 2.2685 33 1 -0.3758 -5.0799 3.8976 34 1 1.8836 -6.8909 7.4870 35 1 -1.8854 -5.4483 8.8795 36 1 -0.6957 -5.6181 -1.0025 37 1 0.5507 -4.7492 -2.0478 38 1 2.3870 -6.1925 -1.0577 39 1 1.1404 -7.0612 -0.0123 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167389573.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:44:49 Heat of formation + Delta-G solvation = 0.072284 kcal Electronic energy + Delta-G solvation = -22222.614149 eV Core-core repulsion = 18703.843917 eV Total energy + Delta-G solvation = -3518.770232 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.98933 -39.61338 -38.98320 -37.04617 -36.16338 -35.74564 -32.76386 -31.94779 -30.35478 -27.82757 -26.43678 -24.64625 -24.47124 -23.06050 -22.35103 -20.75724 -20.14993 -19.52704 -18.90790 -17.50568 -17.13195 -16.87045 -16.61062 -16.46665 -16.11818 -15.67741 -15.20638 -15.02355 -14.78389 -14.62970 -14.27048 -14.16797 -13.87556 -13.79957 -13.19062 -13.01849 -12.75859 -12.60740 -12.45931 -12.41984 -12.26488 -12.17912 -11.92907 -11.90855 -11.84837 -11.34097 -11.06529 -10.88540 -10.56531 -10.34741 -10.01794 -9.53696 -8.95779 -7.93430 -5.20598 -0.73546 0.16113 0.43280 1.00792 1.43577 1.47387 1.49460 1.55579 1.96331 2.02588 2.55332 2.90891 3.39340 3.58378 3.83401 3.85430 3.90924 3.98779 4.07635 4.08822 4.24357 4.41168 4.47334 4.50980 4.63979 4.80740 4.86284 4.87791 4.93891 4.98079 5.10114 5.15274 5.27033 5.31925 5.36294 5.39524 5.50160 6.29137 6.31420 6.97569 7.36499 8.12599 8.38859 9.29502 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012503 B = 0.002621 C = 0.002330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2238.951449 B =10679.425769 C =12014.055079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.964 5.964 2 C -0.070 4.070 3 Si 0.968 3.032 4 H -0.281 1.281 5 H -0.293 1.293 6 H -0.281 1.281 7 C -0.246 4.246 8 H 0.068 0.932 9 N -0.735 5.735 10 C 0.187 3.813 11 C -0.139 4.139 12 C -0.079 4.079 13 C 0.133 3.867 14 N -0.713 5.713 15 C 0.587 3.413 16 O -0.569 6.569 17 C -0.288 4.288 18 C -0.055 4.055 19 C -0.078 4.078 20 Cl -0.045 7.045 21 C -0.218 4.218 22 S 0.314 5.686 23 C -0.163 4.163 24 C -0.151 4.151 25 H 0.252 0.748 26 H 0.377 0.623 27 H 0.018 0.982 28 H 0.012 0.988 29 H 0.093 0.907 30 H 0.061 0.939 31 H 0.048 0.952 32 H 0.079 0.921 33 H 0.409 0.591 34 H 0.154 0.846 35 H 0.209 0.791 36 H 0.109 0.891 37 H 0.079 0.921 38 H 0.095 0.905 39 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.640 -16.608 15.093 23.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.263 4.263 3 Si 0.797 3.203 4 H -0.207 1.207 5 H -0.219 1.219 6 H -0.207 1.207 7 C -0.378 4.378 8 H 0.086 0.914 9 N -0.377 5.377 10 C 0.060 3.940 11 C -0.140 4.140 12 C -0.116 4.116 13 C 0.010 3.990 14 N -0.364 5.364 15 C 0.374 3.626 16 O -0.450 6.450 17 C -0.409 4.409 18 C -0.089 4.089 19 C -0.118 4.118 20 Cl -0.017 7.017 21 C -0.357 4.357 22 S 0.581 5.419 23 C -0.200 4.200 24 C -0.188 4.188 25 H 0.060 0.940 26 H 0.210 0.790 27 H 0.036 0.964 28 H 0.030 0.970 29 H 0.111 0.889 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.245 0.755 34 H 0.172 0.828 35 H 0.226 0.774 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.113 0.887 39 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -6.765 -16.173 14.223 22.575 hybrid contribution 1.103 0.659 1.077 1.677 sum -5.661 -15.514 15.301 22.513 Atomic orbital electron populations 1.69786 1.06290 1.26049 1.59337 1.25458 0.96395 1.00669 1.03734 0.85296 0.77318 0.79637 0.78013 1.20683 1.21865 1.20715 1.19545 0.91280 0.85594 1.41421 0.91366 1.42412 1.05650 1.00534 1.89127 1.20245 0.92706 0.84175 0.96840 1.21386 1.02277 0.96146 0.94184 1.21127 0.97662 1.01284 0.91572 1.21288 0.95443 1.01386 0.80889 1.45815 1.21577 1.60744 1.08242 1.17140 0.84719 0.77679 0.83028 1.90818 1.20754 1.47378 1.86091 1.24421 1.03622 1.15413 0.97407 1.20552 1.00901 0.98074 0.89402 1.19497 0.96295 1.07550 0.88411 1.98375 1.94123 1.89295 1.19896 1.25695 1.02151 1.04273 1.03611 1.83083 1.09014 1.51130 0.98688 1.23012 0.98006 1.03029 0.95983 1.23068 0.99733 0.93384 1.02634 0.93967 0.79020 0.96449 0.97016 0.88891 0.92060 0.93366 0.90269 0.75468 0.82833 0.77427 0.87228 0.90231 0.88655 0.86623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -57.79 13.06 21.65 0.28 -57.51 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.97 46.13 29.55 68.60 2.03 48.15 16 4 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 5 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 6 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 7 C -0.25 -13.81 9.99 84.04 0.84 -12.97 16 8 H 0.07 3.74 7.83 -2.91 -0.02 3.72 16 9 N -0.73 -36.78 5.30 -343.44 -1.82 -38.60 16 10 C 0.19 7.51 6.10 86.38 0.53 8.03 16 11 C -0.14 -4.16 1.52 -52.18 -0.08 -4.24 16 12 C -0.08 -2.10 5.24 30.59 0.16 -1.94 16 13 C 0.13 3.55 5.51 86.38 0.48 4.02 16 14 N -0.71 -17.18 5.55 -467.17 -2.59 -19.78 16 15 C 0.59 16.13 7.78 86.42 0.67 16.80 16 16 O -0.57 -20.05 16.84 -4.36 -0.07 -20.12 16 17 C -0.29 -6.19 6.45 24.08 0.16 -6.04 16 18 C -0.06 -1.16 9.89 21.74 0.21 -0.94 16 19 C -0.08 -1.33 6.25 21.11 0.13 -1.20 16 20 Cl -0.05 -0.74 29.10 -2.72 -0.08 -0.82 16 21 C -0.22 -2.77 10.77 66.83 0.72 -2.05 16 22 S 0.31 4.23 22.15 -56.49 -1.25 2.98 16 23 C -0.16 -4.34 9.90 30.60 0.30 -4.04 16 24 C -0.15 -3.52 9.57 30.60 0.29 -3.23 16 25 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 26 H 0.38 19.77 7.46 -92.71 -0.69 19.08 16 27 H 0.02 0.73 7.69 -2.38 -0.02 0.72 16 28 H 0.01 0.49 8.09 -2.39 -0.02 0.47 16 29 H 0.09 1.94 7.94 -2.38 -0.02 1.92 16 30 H 0.06 1.99 7.64 -2.39 -0.02 1.97 16 31 H 0.05 1.57 7.69 -2.39 -0.02 1.55 16 32 H 0.08 1.96 7.80 -2.39 -0.02 1.94 16 33 H 0.41 7.80 7.58 -92.71 -0.70 7.10 16 34 H 0.15 3.39 8.06 -2.91 -0.02 3.36 16 35 H 0.21 1.41 8.06 -2.91 -0.02 1.39 16 36 H 0.11 2.46 8.08 -2.39 -0.02 2.44 16 37 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 38 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.12 2.16 7.98 -2.39 -0.02 2.14 16 Total: -1.00 -69.64 363.84 1.07 -68.57 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: -0.30 Total: 28.44 kcal Atomic # 6 Polarization: -16.19 SS G_CDS: 4.88 Total: -11.31 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.13 Total: -115.89 kcal Atomic # 8 Polarization: -20.05 SS G_CDS: -0.07 Total: -20.12 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.15 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.25 Total: 2.98 kcal Atomic # 17 Polarization: -0.74 SS G_CDS: -0.08 Total: -0.82 kcal Total: -69.64 1.07 -68.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167389573.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.638 kcal (2) G-P(sol) polarization free energy of solvation -69.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.566 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds