Wall clock time and date at job start Tue Mar 31 2020 14:45:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.43197 * 120.00506 * 29.79039 * 3 2 1 5 5 N 3.51038 * 140.68619 * 29.78724 * 2 1 3 6 6 C 1.40707 * 119.99609 * 209.78497 * 3 2 1 7 7 C 1.39444 * 120.00074 * 354.75077 * 6 3 2 8 8 H 1.07994 * 120.00353 * 332.06296 * 7 6 3 9 9 C 1.41843 * 119.99797 * 152.06743 * 7 6 3 10 10 N 1.29799 * 119.99642 * 169.09043 * 9 7 6 11 11 Si 1.86804 * 120.00398 * 349.08483 * 9 7 6 12 12 H 1.48496 * 109.47032 * 86.62352 * 11 9 7 13 13 H 1.48502 * 109.47094 * 206.62728 * 11 9 7 14 14 H 1.48503 * 109.46964 * 326.62560 * 11 9 7 15 15 N 1.38352 * 120.00043 * 174.74280 * 6 3 2 16 16 C 1.39180 * 119.99826 * 121.22615 * 15 6 3 17 17 N 1.32351 * 119.63896 * 4.46071 * 16 15 6 18 18 C 1.31864 * 121.95066 * 179.74584 * 17 16 15 19 19 C 1.38023 * 120.99375 * 0.52937 * 18 17 16 20 20 C 1.39969 * 119.16744 * 359.74120 * 19 18 17 21 21 C 1.48159 * 120.88161 * 179.97438 * 20 19 18 22 22 N 1.34779 * 120.00118 * 0.02562 * 21 20 19 23 23 O 1.21518 * 120.00010 * 180.02562 * 21 20 19 24 24 C 1.39044 * 119.64453 * 184.72914 * 16 15 6 25 25 N 1.48020 * 120.53205 * 359.96041 * 24 16 15 26 26 O 1.31704 * 119.99891 * 89.99737 * 25 24 16 27 27 O 1.31696 * 120.00487 * 270.00253 * 25 24 16 28 28 H 0.97001 * 119.99486 * 179.97438 * 10 9 7 29 29 H 0.97000 * 120.00232 * 300.95906 * 15 6 3 30 30 H 1.08001 * 119.50118 * 180.27587 * 18 17 16 31 31 H 1.08004 * 120.41889 * 179.72547 * 19 18 17 32 32 H 0.97000 * 120.00460 * 359.97438 * 22 21 20 33 33 H 0.97007 * 119.99742 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2845 -1.0752 -0.6161 5 7 3.8519 -1.9302 -1.1049 6 6 3.2709 1.0586 0.6053 7 6 2.5775 2.1590 1.1081 8 1 1.6297 2.4437 0.6756 9 6 3.1171 2.9046 2.1874 10 7 2.5887 4.0432 2.5178 11 14 4.5880 2.2479 3.1333 12 1 5.8403 2.6631 2.4518 13 1 4.5718 2.7931 4.5145 14 1 4.5210 0.7653 3.1856 15 7 4.6501 1.0069 0.7019 16 6 5.4262 2.0059 0.1215 17 7 4.8367 3.0472 -0.4440 18 6 5.5274 4.0217 -1.0027 19 6 6.9070 3.9898 -1.0302 20 6 7.5760 2.9061 -0.4496 21 6 9.0558 2.8329 -0.4581 22 7 9.7760 3.8184 -1.0297 23 8 9.6201 1.8844 0.0502 24 6 6.8122 1.8962 0.1370 25 7 7.4671 0.7273 0.7661 26 8 7.7257 -0.3472 0.0497 27 8 7.7911 0.7616 2.0421 28 1 2.9575 4.5529 3.2561 29 1 5.0760 0.2766 1.1775 30 1 5.0056 4.8553 -1.4490 31 1 7.4633 4.7909 -1.4942 32 1 9.3256 4.5754 -1.4359 33 1 10.7449 3.7706 -1.0349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169078871.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:56 Heat of formation + Delta-G solvation = 109.328160 kcal Electronic energy + Delta-G solvation = -27590.667034 eV Core-core repulsion = 23429.233785 eV Total energy + Delta-G solvation = -4161.433250 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.52494 -39.67653 -38.40910 -37.75790 -35.50695 -34.85668 -34.51944 -34.21573 -34.10944 -32.99954 -31.97917 -29.57192 -27.46827 -27.00153 -25.14454 -23.03405 -22.23043 -21.00850 -19.51529 -19.09110 -18.43382 -18.08258 -18.00955 -17.54139 -16.94311 -16.56521 -16.43170 -15.52368 -15.39715 -15.08228 -14.88290 -14.54325 -14.36605 -13.48279 -13.21345 -13.07325 -12.89225 -12.65947 -12.18477 -11.91432 -11.76359 -11.65801 -11.38145 -11.21141 -11.10421 -11.07177 -10.89353 -10.77866 -10.61809 -10.53459 -10.39346 -10.25872 -9.95863 -9.90429 -8.87904 -8.02681 -7.81684 -5.54517 -0.06043 -0.01214 0.55630 1.15090 1.79714 2.39222 2.50822 2.61698 2.66683 2.70094 2.90166 3.21775 3.29882 3.72504 3.92995 3.95996 4.01818 4.08792 4.14783 4.20263 4.40513 4.60078 4.98768 5.04417 5.18960 5.34385 5.64670 5.86463 5.93377 6.20258 6.22358 6.50124 6.66941 6.81836 6.81983 7.08605 7.30261 7.55445 7.61342 7.62254 7.90969 8.80032 8.98838 9.01021 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.005793 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.766514 B = 4832.462793 C = 5466.041983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C 0.324 3.676 3 C -0.287 4.287 4 C 0.296 3.704 5 N -0.514 5.514 6 C 0.320 3.680 7 C -0.314 4.314 8 H 0.129 0.871 9 C 0.079 3.921 10 N -0.714 5.714 11 Si 0.902 3.098 12 H -0.256 1.256 13 H -0.269 1.269 14 H -0.247 1.247 15 N -0.657 5.657 16 C 0.462 3.538 17 N -0.455 5.455 18 C 0.189 3.811 19 C -0.198 4.198 20 C -0.011 4.011 21 C 0.557 3.443 22 N -0.836 5.836 23 O -0.511 6.511 24 C -0.068 4.068 25 N -0.017 5.017 26 O -0.122 6.122 27 O -0.142 6.142 28 H 0.306 0.694 29 H 0.412 0.588 30 H 0.186 0.814 31 H 0.157 0.843 32 H 0.405 0.595 33 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.226 12.948 -2.778 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.201 5.201 2 C 0.016 3.984 3 C -0.304 4.304 4 C -0.013 4.013 5 N -0.196 5.196 6 C 0.219 3.781 7 C -0.341 4.341 8 H 0.146 0.854 9 C -0.154 4.154 10 N -0.331 5.331 11 Si 0.726 3.274 12 H -0.181 1.181 13 H -0.195 1.195 14 H -0.171 1.171 15 N -0.284 5.284 16 C 0.225 3.775 17 N -0.171 5.171 18 C 0.026 3.974 19 C -0.221 4.221 20 C -0.023 4.023 21 C 0.340 3.660 22 N -0.401 5.401 23 O -0.385 6.385 24 C -0.160 4.160 25 N 0.478 4.522 26 O -0.329 6.329 27 O -0.344 6.344 28 H 0.119 0.881 29 H 0.252 0.748 30 H 0.203 0.797 31 H 0.175 0.825 32 H 0.235 0.765 33 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges 10.056 11.801 -3.297 15.851 hybrid contribution 2.293 0.063 0.828 2.438 sum 12.349 11.863 -2.469 17.301 Atomic orbital electron populations 1.81076 1.12017 1.11176 1.15805 1.24472 0.91053 0.91857 0.91065 1.12513 0.83259 1.00755 1.33912 1.25270 0.92923 0.91910 0.91155 1.81151 1.09159 1.12699 1.16585 1.16786 0.77757 0.92125 0.91416 1.20300 1.04884 1.02167 1.06757 0.85371 1.26766 0.98161 0.93302 0.97173 1.69128 1.34491 1.08262 1.21175 0.86390 0.79447 0.82126 0.79473 1.18120 1.19528 1.17068 1.42617 1.06823 1.24061 1.54862 1.17621 0.83055 0.88595 0.88215 1.67803 1.37481 1.00355 1.11424 1.23051 0.90407 0.94665 0.89263 1.22086 0.96235 0.98758 1.05069 1.19784 0.93804 0.92930 0.95825 1.18005 0.86180 0.83082 0.78713 1.43525 1.11251 1.24527 1.60844 1.90985 1.71695 1.32072 1.43739 1.20439 0.91325 0.91279 1.12927 1.49884 0.97599 1.02305 1.02426 1.96307 1.56377 1.18934 1.61265 1.96257 1.54904 1.90147 0.93079 0.88117 0.74838 0.79695 0.82537 0.76472 0.75491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.52 -12.25 18.54 41.84 0.78 -11.48 16 2 C 0.32 7.33 14.04 -22.48 -0.32 7.02 16 3 C -0.29 -6.18 5.87 -105.12 -0.62 -6.80 16 4 C 0.30 6.67 14.81 -22.45 -0.33 6.33 16 5 N -0.51 -12.19 18.54 41.86 0.78 -11.41 16 6 C 0.32 6.48 5.06 -83.54 -0.42 6.06 16 7 C -0.31 -6.43 7.93 -37.75 -0.30 -6.73 16 8 H 0.13 2.83 7.49 -52.49 -0.39 2.44 16 9 C 0.08 1.54 5.17 -17.03 -0.09 1.46 16 10 N -0.71 -13.81 13.88 55.65 0.77 -13.04 16 11 Si 0.90 16.55 24.33 -169.99 -4.14 12.41 16 12 H -0.26 -4.69 5.60 56.52 0.32 -4.37 16 13 H -0.27 -4.81 7.11 56.52 0.40 -4.40 16 14 H -0.25 -4.67 6.66 56.52 0.38 -4.29 16 15 N -0.66 -12.69 2.22 -9.76 -0.02 -12.71 16 16 C 0.46 8.11 4.77 -154.92 -0.74 7.37 16 17 N -0.45 -7.04 8.47 -12.45 -0.11 -7.15 16 18 C 0.19 1.92 11.17 -17.62 -0.20 1.73 16 19 C -0.20 -1.69 9.61 -39.01 -0.37 -2.07 16 20 C -0.01 -0.15 5.90 -104.69 -0.62 -0.77 16 21 C 0.56 7.09 8.07 -12.18 -0.10 6.99 16 22 N -0.84 -5.47 8.83 30.60 0.27 -5.20 16 23 O -0.51 -8.97 15.67 1.07 0.02 -8.95 16 24 C -0.07 -1.17 5.66 -79.16 -0.45 -1.62 16 25 N -0.02 -0.35 2.18 34.35 0.07 -0.27 16 26 O -0.12 -2.57 19.81 -33.25 -0.66 -3.23 16 27 O -0.14 -2.90 19.81 -33.22 -0.66 -3.56 16 28 H 0.31 5.27 8.27 -40.82 -0.34 4.93 16 29 H 0.41 8.09 7.12 -40.82 -0.29 7.80 16 30 H 0.19 1.11 8.06 -52.49 -0.42 0.68 16 31 H 0.16 0.48 6.53 -52.48 -0.34 0.14 16 32 H 0.41 1.13 6.97 -40.82 -0.28 0.85 16 33 H 0.41 2.12 8.93 -40.82 -0.36 1.75 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -31.30 323.09 -3.92 -35.22 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -1.34 Total: 5.53 kcal Atomic # 6 Polarization: 23.52 SS G_CDS: -4.55 Total: 18.97 kcal Atomic # 7 Polarization: -63.79 SS G_CDS: 2.54 Total: -61.25 kcal Atomic # 8 Polarization: -14.45 SS G_CDS: -1.30 Total: -15.75 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -4.14 Total: 12.41 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -31.30 -3.92 -35.22 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078871.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.544 kcal (2) G-P(sol) polarization free energy of solvation -31.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds