Wall clock time and date at job start Tue Mar 31 2020 14:45:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.43196 * 179.97438 * 2 1 4 4 C 1.43197 * 120.00506 * 29.79039 * 3 2 1 5 5 N 3.51038 * 140.68619 * 29.78724 * 2 1 3 6 6 C 1.40707 * 119.99609 * 209.78497 * 3 2 1 7 7 C 1.39444 * 120.00074 * 354.75077 * 6 3 2 8 8 H 1.07994 * 120.00353 * 332.06296 * 7 6 3 9 9 C 1.41843 * 119.99797 * 152.06743 * 7 6 3 10 10 N 1.29799 * 119.99642 * 169.09043 * 9 7 6 11 11 Si 1.86804 * 120.00398 * 349.08483 * 9 7 6 12 12 H 1.48496 * 109.47032 * 86.62352 * 11 9 7 13 13 H 1.48502 * 109.47094 * 206.62728 * 11 9 7 14 14 H 1.48503 * 109.46964 * 326.62560 * 11 9 7 15 15 N 1.38352 * 120.00043 * 174.74280 * 6 3 2 16 16 C 1.39180 * 119.99826 * 121.22615 * 15 6 3 17 17 N 1.32351 * 119.63896 * 4.46071 * 16 15 6 18 18 C 1.31864 * 121.95066 * 179.74584 * 17 16 15 19 19 C 1.38023 * 120.99375 * 0.52937 * 18 17 16 20 20 C 1.39969 * 119.16744 * 359.74120 * 19 18 17 21 21 C 1.48159 * 120.88161 * 179.97438 * 20 19 18 22 22 N 1.34779 * 120.00118 * 0.02562 * 21 20 19 23 23 O 1.21518 * 120.00010 * 180.02562 * 21 20 19 24 24 C 1.39044 * 119.64453 * 184.72914 * 16 15 6 25 25 N 1.48020 * 120.53205 * 359.96041 * 24 16 15 26 26 O 1.31704 * 119.99891 * 89.99737 * 25 24 16 27 27 O 1.31696 * 120.00487 * 270.00253 * 25 24 16 28 28 H 0.97001 * 119.99486 * 179.97438 * 10 9 7 29 29 H 0.97000 * 120.00232 * 300.95906 * 15 6 3 30 30 H 1.08001 * 119.50118 * 180.27587 * 18 17 16 31 31 H 1.08004 * 120.41889 * 179.72547 * 19 18 17 32 32 H 0.97000 * 120.00460 * 359.97438 * 22 21 20 33 33 H 0.97007 * 119.99742 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2845 -1.0752 -0.6161 5 7 3.8519 -1.9302 -1.1049 6 6 3.2709 1.0586 0.6053 7 6 2.5775 2.1590 1.1081 8 1 1.6297 2.4437 0.6756 9 6 3.1171 2.9046 2.1874 10 7 2.5887 4.0432 2.5178 11 14 4.5880 2.2479 3.1333 12 1 5.8403 2.6631 2.4518 13 1 4.5718 2.7931 4.5145 14 1 4.5210 0.7653 3.1856 15 7 4.6501 1.0069 0.7019 16 6 5.4262 2.0059 0.1215 17 7 4.8367 3.0472 -0.4440 18 6 5.5274 4.0217 -1.0027 19 6 6.9070 3.9898 -1.0302 20 6 7.5760 2.9061 -0.4496 21 6 9.0558 2.8329 -0.4581 22 7 9.7760 3.8184 -1.0297 23 8 9.6201 1.8844 0.0502 24 6 6.8122 1.8962 0.1370 25 7 7.4671 0.7273 0.7661 26 8 7.7257 -0.3472 0.0497 27 8 7.7911 0.7616 2.0421 28 1 2.9575 4.5529 3.2561 29 1 5.0760 0.2766 1.1775 30 1 5.0056 4.8553 -1.4490 31 1 7.4633 4.7909 -1.4942 32 1 9.3256 4.5754 -1.4359 33 1 10.7449 3.7706 -1.0349 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169078871.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:55 Heat of formation + Delta-G solvation = 85.361452 kcal Electronic energy + Delta-G solvation = -27591.706309 eV Core-core repulsion = 23429.233785 eV Total energy + Delta-G solvation = -4162.472524 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.62907 -40.72803 -39.81640 -39.14463 -37.19369 -36.65283 -35.86939 -35.63162 -35.31217 -34.08014 -33.30519 -30.89525 -29.09451 -28.25109 -26.28341 -24.19512 -23.53749 -22.26337 -20.92969 -20.32680 -19.56058 -19.48584 -19.44425 -18.84816 -18.08584 -17.98372 -17.59659 -16.90732 -16.46675 -16.09640 -15.84312 -15.73006 -15.44418 -15.00896 -14.68847 -14.64550 -14.38977 -14.10160 -13.69217 -13.61420 -13.48917 -13.32958 -12.96035 -12.89531 -12.74903 -12.52592 -12.38703 -12.03446 -11.97377 -11.92676 -11.73326 -11.32182 -11.00610 -10.98898 -10.28925 -9.54265 -9.28052 -7.23350 -1.59883 -1.03332 -0.47851 -0.16786 0.27806 1.09220 1.18313 1.20482 1.39183 1.45199 1.76260 1.92620 1.94991 2.12615 2.27907 2.38799 2.44981 2.96566 3.09302 3.20619 3.25982 3.41401 3.64160 3.74484 4.17212 4.31026 4.36168 4.48496 4.59968 4.88983 5.18030 5.25313 5.33932 5.55610 5.58998 5.64058 6.00050 6.04609 6.22496 6.56941 6.93800 7.03106 7.22972 7.48219 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.012836 B = 0.005793 C = 0.005121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2180.766514 B = 4832.462793 C = 5466.041983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C 0.331 3.669 3 C -0.302 4.302 4 C 0.305 3.695 5 N -0.543 5.543 6 C 0.331 3.669 7 C -0.306 4.306 8 H 0.112 0.888 9 C 0.076 3.924 10 N -0.715 5.715 11 Si 0.926 3.074 12 H -0.254 1.254 13 H -0.259 1.259 14 H -0.265 1.265 15 N -0.672 5.672 16 C 0.443 3.557 17 N -0.480 5.480 18 C 0.193 3.807 19 C -0.145 4.145 20 C -0.029 4.029 21 C 0.553 3.447 22 N -0.797 5.797 23 O -0.572 6.572 24 C -0.101 4.101 25 N -0.007 5.007 26 O -0.167 6.167 27 O -0.151 6.151 28 H 0.321 0.679 29 H 0.404 0.596 30 H 0.239 0.761 31 H 0.226 0.774 32 H 0.427 0.573 33 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.325 17.295 -3.771 22.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.226 5.226 2 C 0.023 3.977 3 C -0.321 4.321 4 C -0.001 4.001 5 N -0.226 5.226 6 C 0.230 3.770 7 C -0.332 4.332 8 H 0.130 0.870 9 C -0.158 4.158 10 N -0.333 5.333 11 Si 0.749 3.251 12 H -0.179 1.179 13 H -0.184 1.184 14 H -0.190 1.190 15 N -0.300 5.300 16 C 0.209 3.791 17 N -0.197 5.197 18 C 0.032 3.968 19 C -0.167 4.167 20 C -0.042 4.042 21 C 0.335 3.665 22 N -0.364 5.364 23 O -0.451 6.451 24 C -0.193 4.193 25 N 0.486 4.514 26 O -0.368 6.368 27 O -0.358 6.358 28 H 0.135 0.865 29 H 0.243 0.757 30 H 0.255 0.745 31 H 0.243 0.757 32 H 0.262 0.738 33 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges 11.184 16.215 -4.383 20.180 hybrid contribution 1.997 -0.906 1.088 2.448 sum 13.181 15.309 -3.295 20.469 Atomic orbital electron populations 1.81058 1.12518 1.11993 1.17000 1.24610 0.91205 0.91314 0.90541 1.12576 0.82835 1.01357 1.35311 1.25396 0.92426 0.91665 0.90661 1.81136 1.09899 1.13602 1.17973 1.16598 0.78512 0.91443 0.90489 1.20220 1.03963 1.02347 1.06719 0.87042 1.26828 0.98635 0.93342 0.96963 1.69077 1.34406 1.08193 1.21590 0.86026 0.78683 0.80909 0.79467 1.17860 1.18442 1.18999 1.42516 1.06253 1.25001 1.56236 1.17667 0.82841 0.89085 0.89462 1.67834 1.38780 1.00910 1.12154 1.24112 0.91470 0.94087 0.87159 1.22891 0.95828 0.97551 1.00443 1.20205 0.94302 0.93272 0.96397 1.18101 0.86151 0.83431 0.78770 1.43270 1.11712 1.23230 1.58200 1.90972 1.72488 1.34740 1.46862 1.20826 0.91590 0.91453 1.15384 1.50247 0.96402 1.02806 1.01972 1.96291 1.58590 1.20681 1.61231 1.96214 1.55170 1.90236 0.94151 0.86545 0.75747 0.74530 0.75707 0.73804 0.74208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -25.96 18.54 19.00 0.35 -25.60 16 2 C 0.33 15.23 14.04 88.33 1.24 16.47 16 3 C -0.30 -13.35 5.87 -20.19 -0.12 -13.47 16 4 C 0.31 14.22 14.81 88.32 1.31 15.53 16 5 N -0.54 -26.64 18.54 19.01 0.35 -26.28 16 6 C 0.33 13.57 5.06 39.01 0.20 13.76 16 7 C -0.31 -12.39 7.93 23.45 0.19 -12.20 16 8 H 0.11 4.91 7.49 -2.91 -0.02 4.88 16 9 C 0.08 2.87 5.17 85.89 0.44 3.31 16 10 N -0.72 -26.06 13.88 22.16 0.31 -25.75 16 11 Si 0.93 33.12 24.33 68.60 1.67 34.79 16 12 H -0.25 -9.04 5.60 99.48 0.56 -8.49 16 13 H -0.26 -8.71 7.11 99.48 0.71 -8.00 16 14 H -0.27 -10.26 6.66 99.48 0.66 -9.60 16 15 N -0.67 -26.40 2.22 -184.78 -0.41 -26.81 16 16 C 0.44 15.21 4.77 133.00 0.63 15.84 16 17 N -0.48 -13.59 8.47 -193.30 -1.64 -15.23 16 18 C 0.19 2.87 11.17 84.64 0.95 3.82 16 19 C -0.14 -1.58 9.61 22.64 0.22 -1.36 16 20 C -0.03 -0.69 5.90 -19.91 -0.12 -0.81 16 21 C 0.55 12.72 8.07 86.88 0.70 13.42 16 22 N -0.80 -6.82 8.83 -175.38 -1.55 -8.37 16 23 O -0.57 -20.08 15.67 0.32 0.01 -20.08 16 24 C -0.10 -3.44 5.66 36.89 0.21 -3.23 16 25 N -0.01 -0.28 2.18 -45.25 -0.10 -0.38 16 26 O -0.17 -7.55 19.81 5.12 0.10 -7.45 16 27 O -0.15 -6.44 19.81 5.11 0.10 -6.34 16 28 H 0.32 10.16 8.27 -92.71 -0.77 9.39 16 29 H 0.40 16.68 7.12 -92.71 -0.66 16.02 16 30 H 0.24 1.01 8.06 -2.91 -0.02 0.98 16 31 H 0.23 -0.74 6.53 -2.91 -0.02 -0.76 16 32 H 0.43 -0.48 6.97 -92.71 -0.65 -1.12 16 33 H 0.42 2.68 8.93 -92.70 -0.83 1.85 16 Total: -1.00 -75.27 323.09 4.00 -71.27 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -1.04 Total: 5.16 kcal Atomic # 6 Polarization: 45.24 SS G_CDS: 5.85 Total: 51.09 kcal Atomic # 7 Polarization: -125.75 SS G_CDS: -2.68 Total: -128.43 kcal Atomic # 8 Polarization: -34.07 SS G_CDS: 0.21 Total: -33.87 kcal Atomic # 14 Polarization: 33.12 SS G_CDS: 1.67 Total: 34.79 kcal Total: -75.27 4.00 -71.27 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169078871.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 156.627 kcal (2) G-P(sol) polarization free energy of solvation -75.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds