Wall clock time and date at job start Tue Mar 31 2020 14:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.43202 * 119.99782 * 117.52670 * 3 2 1 5 5 N 3.51028 * 140.68794 * 117.52400 * 2 1 3 6 6 C 1.40699 * 120.00013 * 297.52496 * 3 2 1 7 7 C 1.39437 * 120.00093 * 354.59840 * 6 3 2 8 8 H 1.07999 * 120.00415 * 327.86547 * 7 6 3 9 9 C 1.41850 * 119.99870 * 147.86939 * 7 6 3 10 10 N 1.29789 * 119.99539 * 170.59794 * 9 7 6 11 11 Si 1.86793 * 119.99905 * 350.59224 * 9 7 6 12 12 H 1.48499 * 109.47009 * 88.82396 * 11 9 7 13 13 H 1.48503 * 109.47325 * 208.82147 * 11 9 7 14 14 H 1.48503 * 109.47265 * 328.82070 * 11 9 7 15 15 N 1.38362 * 119.99812 * 174.60236 * 6 3 2 16 16 C 1.39132 * 120.00323 * 119.96880 * 15 6 3 17 17 C 1.39468 * 119.63670 * 353.05444 * 16 15 6 18 18 C 1.38273 * 119.29365 * 179.97438 * 17 16 15 19 19 C 1.38816 * 118.57782 * 359.97438 * 18 17 16 20 20 N 1.48017 * 120.38599 * 179.97438 * 19 18 17 21 21 O 1.31705 * 120.00447 * 50.71040 * 20 19 18 22 22 O 1.31705 * 119.99936 * 230.70752 * 20 19 18 23 23 C 1.39129 * 119.22347 * 359.97438 * 19 18 17 24 24 C 1.48152 * 119.67894 * 180.02562 * 23 19 18 25 25 N 1.34777 * 119.99503 * 185.92776 * 24 23 19 26 26 O 1.21514 * 120.00109 * 5.92875 * 24 23 19 27 27 N 1.32059 * 119.63955 * 173.03131 * 16 15 6 28 28 H 0.97007 * 119.99711 * 179.97438 * 10 9 7 29 29 H 0.97007 * 120.00068 * 299.96777 * 15 6 3 30 30 H 1.08006 * 120.35186 * 359.94781 * 17 16 15 31 31 H 1.08008 * 120.70982 * 180.02562 * 18 17 16 32 32 H 0.96993 * 120.00807 * 359.97438 * 25 24 23 33 33 H 0.97000 * 119.99429 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2837 0.5741 -1.0998 5 7 3.8520 1.0277 -1.9722 6 6 3.2717 -0.5622 1.0806 7 6 2.5794 -1.0185 2.2016 8 1 1.6672 -0.5290 2.5092 9 6 3.0734 -2.1256 2.9381 10 7 2.5376 -2.4374 4.0784 11 14 4.4947 -3.1347 2.2668 12 1 5.7791 -2.5443 2.7215 13 1 4.3885 -4.5305 2.7626 14 1 4.4463 -3.1317 0.7825 15 7 4.6508 -0.6627 1.0308 16 6 5.4301 -0.0217 1.9887 17 6 4.8263 0.8366 2.9073 18 6 5.6075 1.4695 3.8565 19 6 6.9741 1.2258 3.8617 20 7 7.8480 1.8824 4.8597 21 8 7.5399 1.8324 6.1392 22 8 8.9339 2.5167 4.4682 23 6 7.5127 0.3571 2.9177 24 6 8.9698 0.0893 2.9143 25 7 9.5159 -0.6548 1.9322 26 8 9.6725 0.5405 3.7971 27 7 6.7333 -0.2331 2.0184 28 1 2.8751 -3.1947 4.5820 29 1 5.0743 -1.1801 0.3280 30 1 3.7600 1.0055 2.8772 31 1 5.1638 2.1385 4.5791 32 1 8.9549 -1.0152 1.2278 33 1 10.4698 -0.8304 1.9302 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169081088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:43 Heat of formation + Delta-G solvation = 103.119872 kcal Electronic energy + Delta-G solvation = -26919.639012 eV Core-core repulsion = 22757.936550 eV Total energy + Delta-G solvation = -4161.702461 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.44218 -39.53414 -38.53624 -37.68957 -35.68853 -35.11726 -34.44002 -34.16731 -34.07710 -32.96663 -31.86150 -30.04079 -27.72369 -26.64051 -25.03608 -23.06978 -22.22335 -21.05252 -19.61949 -18.83290 -18.50973 -18.13662 -17.70581 -17.68545 -17.13286 -16.70202 -15.98574 -15.78204 -15.47707 -14.90320 -14.52709 -14.26098 -13.83469 -13.69710 -13.57559 -13.24967 -13.14821 -12.86308 -12.33555 -12.10638 -11.96577 -11.90561 -11.56390 -11.36403 -11.23482 -11.15133 -10.98864 -10.75307 -10.72276 -10.40086 -10.35333 -10.20053 -10.07181 -9.85903 -8.98797 -8.16568 -7.93744 -5.84433 -0.40806 0.38727 0.79906 1.23886 1.54901 2.39599 2.42758 2.49099 2.54325 2.66173 2.99343 3.09909 3.33975 3.46524 3.69584 3.80149 3.88864 3.97157 4.24341 4.37136 4.44305 4.72720 5.02162 5.06626 5.24493 5.34628 5.69532 5.79603 5.96445 6.02848 6.40458 6.44195 6.61967 6.87423 6.93130 7.04699 7.08854 7.31174 7.35010 7.71829 7.89376 8.51828 8.76030 8.83234 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013140 B = 0.004622 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.451069 B = 6056.745449 C = 6360.816589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.508 5.508 2 C 0.318 3.682 3 C -0.270 4.270 4 C 0.300 3.700 5 N -0.512 5.512 6 C 0.319 3.681 7 C -0.359 4.359 8 H 0.130 0.870 9 C 0.071 3.929 10 N -0.713 5.713 11 Si 0.909 3.091 12 H -0.248 1.248 13 H -0.274 1.274 14 H -0.245 1.245 15 N -0.651 5.651 16 C 0.443 3.557 17 C -0.165 4.165 18 C 0.002 3.998 19 C -0.058 4.058 20 N -0.014 5.014 21 O -0.189 6.189 22 O -0.100 6.100 23 C 0.186 3.814 24 C 0.566 3.434 25 N -0.826 5.826 26 O -0.503 6.503 27 N -0.502 5.502 28 H 0.310 0.690 29 H 0.414 0.586 30 H 0.180 0.820 31 H 0.165 0.835 32 H 0.413 0.587 33 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -2.688 1.358 8.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.188 5.188 2 C 0.009 3.991 3 C -0.287 4.287 4 C -0.009 4.009 5 N -0.193 5.193 6 C 0.218 3.782 7 C -0.386 4.386 8 H 0.148 0.852 9 C -0.162 4.162 10 N -0.329 5.329 11 Si 0.732 3.268 12 H -0.172 1.172 13 H -0.201 1.201 14 H -0.168 1.168 15 N -0.278 5.278 16 C 0.206 3.794 17 C -0.190 4.190 18 C -0.023 4.023 19 C -0.150 4.150 20 N 0.476 4.524 21 O -0.377 6.377 22 O -0.314 6.314 23 C 0.042 3.958 24 C 0.347 3.653 25 N -0.391 5.391 26 O -0.376 6.376 27 N -0.224 5.224 28 H 0.123 0.877 29 H 0.254 0.746 30 H 0.198 0.802 31 H 0.182 0.818 32 H 0.244 0.756 33 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 7.488 -2.655 -0.047 7.945 hybrid contribution 0.735 -0.618 0.402 1.041 sum 8.223 -3.273 0.355 8.857 Atomic orbital electron populations 1.81120 1.12048 1.15294 1.10386 1.24504 0.91115 0.91311 0.92209 1.12666 0.83290 1.34614 0.98135 1.25189 0.92775 0.91046 0.91907 1.81120 1.09535 1.16421 1.12271 1.16857 0.78268 0.91310 0.91796 1.20449 1.07585 1.07583 1.02963 0.85223 1.26786 0.98189 0.97842 0.93428 1.69094 1.33411 1.22000 1.08442 0.86224 0.79879 0.78933 0.81754 1.17243 1.20051 1.16818 1.42391 1.05280 1.51614 1.28518 1.18321 0.86753 0.87111 0.87234 1.22063 1.03772 0.97701 0.95423 1.21145 0.88546 0.96043 0.96609 1.20805 0.91179 1.06508 0.96501 1.49912 1.01230 0.98484 1.02806 1.96266 1.79033 1.67892 0.94463 1.96266 1.10733 1.38278 1.86083 1.20491 0.94571 0.91819 0.88914 1.17733 0.85429 0.79219 0.82913 1.43510 1.13229 1.53862 1.28502 1.91035 1.61097 1.49285 1.36182 1.67264 1.04809 1.26281 1.24003 0.87718 0.74595 0.80242 0.81751 0.75641 0.75855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.68 18.54 41.84 0.78 -9.91 16 2 C 0.32 6.19 14.11 -22.47 -0.32 5.87 16 3 C -0.27 -4.72 5.87 -105.12 -0.62 -5.34 16 4 C 0.30 5.52 14.81 -22.48 -0.33 5.19 16 5 N -0.51 -10.14 18.54 41.83 0.78 -9.37 16 6 C 0.32 5.07 4.33 -83.54 -0.36 4.71 16 7 C -0.36 -6.07 7.07 -37.75 -0.27 -6.34 16 8 H 0.13 2.40 7.61 -52.49 -0.40 2.00 16 9 C 0.07 1.20 5.46 -17.03 -0.09 1.11 16 10 N -0.71 -12.70 13.88 55.65 0.77 -11.92 16 11 Si 0.91 13.51 24.53 -169.99 -4.17 9.34 16 12 H -0.25 -3.67 6.23 56.52 0.35 -3.32 16 13 H -0.27 -4.21 7.11 56.52 0.40 -3.81 16 14 H -0.24 -3.46 6.55 56.52 0.37 -3.09 16 15 N -0.65 -9.30 2.25 -9.73 -0.02 -9.32 16 16 C 0.44 6.24 5.61 -155.06 -0.87 5.37 16 17 C -0.16 -2.20 8.88 -39.11 -0.35 -2.54 16 18 C 0.00 0.03 10.01 -39.35 -0.39 -0.36 16 19 C -0.06 -0.89 6.41 -79.40 -0.51 -1.40 16 20 N -0.01 -0.25 4.06 34.23 0.14 -0.11 16 21 O -0.19 -3.46 19.90 -31.57 -0.63 -4.09 16 22 O -0.10 -1.85 16.76 -40.05 -0.67 -2.53 16 23 C 0.19 2.73 6.74 -83.03 -0.56 2.17 16 24 C 0.57 8.05 7.96 -12.19 -0.10 7.95 16 25 N -0.83 -7.99 8.86 30.60 0.27 -7.72 16 26 O -0.50 -8.76 13.62 -19.32 -0.26 -9.02 16 27 N -0.50 -6.89 9.13 -8.96 -0.08 -6.97 16 28 H 0.31 4.98 8.27 -40.82 -0.34 4.64 16 29 H 0.41 5.45 7.84 -40.82 -0.32 5.13 16 30 H 0.18 2.30 6.20 -52.48 -0.33 1.97 16 31 H 0.16 1.75 8.06 -52.48 -0.42 1.33 16 32 H 0.41 3.38 8.17 -40.82 -0.33 3.05 16 33 H 0.41 3.03 8.93 -40.82 -0.36 2.67 16 LS Contribution 322.28 15.07 4.86 4.86 Total: -1.00 -25.43 322.28 -4.39 -29.82 By element: Atomic # 1 Polarization: 11.95 SS G_CDS: -1.38 Total: 10.57 kcal Atomic # 6 Polarization: 21.14 SS G_CDS: -4.77 Total: 16.37 kcal Atomic # 7 Polarization: -57.95 SS G_CDS: 2.63 Total: -55.32 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -1.56 Total: -15.64 kcal Atomic # 14 Polarization: 13.51 SS G_CDS: -4.17 Total: 9.34 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -25.43 -4.39 -29.82 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169081088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.937 kcal (2) G-P(sol) polarization free energy of solvation -25.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.511 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds