Wall clock time and date at job start Tue Mar 31 2020 14:42:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43193 * 179.97438 * 2 1 4 4 C 1.43202 * 119.99782 * 117.52670 * 3 2 1 5 5 N 3.51028 * 140.68794 * 117.52400 * 2 1 3 6 6 C 1.40699 * 120.00013 * 297.52496 * 3 2 1 7 7 C 1.39437 * 120.00093 * 354.59840 * 6 3 2 8 8 H 1.07999 * 120.00415 * 327.86547 * 7 6 3 9 9 C 1.41850 * 119.99870 * 147.86939 * 7 6 3 10 10 N 1.29789 * 119.99539 * 170.59794 * 9 7 6 11 11 Si 1.86793 * 119.99905 * 350.59224 * 9 7 6 12 12 H 1.48499 * 109.47009 * 88.82396 * 11 9 7 13 13 H 1.48503 * 109.47325 * 208.82147 * 11 9 7 14 14 H 1.48503 * 109.47265 * 328.82070 * 11 9 7 15 15 N 1.38362 * 119.99812 * 174.60236 * 6 3 2 16 16 C 1.39132 * 120.00323 * 119.96880 * 15 6 3 17 17 C 1.39468 * 119.63670 * 353.05444 * 16 15 6 18 18 C 1.38273 * 119.29365 * 179.97438 * 17 16 15 19 19 C 1.38816 * 118.57782 * 359.97438 * 18 17 16 20 20 N 1.48017 * 120.38599 * 179.97438 * 19 18 17 21 21 O 1.31705 * 120.00447 * 50.71040 * 20 19 18 22 22 O 1.31705 * 119.99936 * 230.70752 * 20 19 18 23 23 C 1.39129 * 119.22347 * 359.97438 * 19 18 17 24 24 C 1.48152 * 119.67894 * 180.02562 * 23 19 18 25 25 N 1.34777 * 119.99503 * 185.92776 * 24 23 19 26 26 O 1.21514 * 120.00109 * 5.92875 * 24 23 19 27 27 N 1.32059 * 119.63955 * 173.03131 * 16 15 6 28 28 H 0.97007 * 119.99711 * 179.97438 * 10 9 7 29 29 H 0.97007 * 120.00068 * 299.96777 * 15 6 3 30 30 H 1.08006 * 120.35186 * 359.94781 * 17 16 15 31 31 H 1.08008 * 120.70982 * 180.02562 * 18 17 16 32 32 H 0.96993 * 120.00807 * 359.97438 * 25 24 23 33 33 H 0.97000 * 119.99429 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2837 0.5741 -1.0998 5 7 3.8520 1.0277 -1.9722 6 6 3.2717 -0.5622 1.0806 7 6 2.5794 -1.0185 2.2016 8 1 1.6672 -0.5290 2.5092 9 6 3.0734 -2.1256 2.9381 10 7 2.5376 -2.4374 4.0784 11 14 4.4947 -3.1347 2.2668 12 1 5.7791 -2.5443 2.7215 13 1 4.3885 -4.5305 2.7626 14 1 4.4463 -3.1317 0.7825 15 7 4.6508 -0.6627 1.0308 16 6 5.4301 -0.0217 1.9887 17 6 4.8263 0.8366 2.9073 18 6 5.6075 1.4695 3.8565 19 6 6.9741 1.2258 3.8617 20 7 7.8480 1.8824 4.8597 21 8 7.5399 1.8324 6.1392 22 8 8.9339 2.5167 4.4682 23 6 7.5127 0.3571 2.9177 24 6 8.9698 0.0893 2.9143 25 7 9.5159 -0.6548 1.9322 26 8 9.6725 0.5405 3.7971 27 7 6.7333 -0.2331 2.0184 28 1 2.8751 -3.1947 4.5820 29 1 5.0743 -1.1801 0.3280 30 1 3.7600 1.0055 2.8772 31 1 5.1638 2.1385 4.5791 32 1 8.9549 -1.0152 1.2278 33 1 10.4698 -0.8304 1.9302 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169081088.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:42:42 Heat of formation + Delta-G solvation = 87.041013 kcal Electronic energy + Delta-G solvation = -26920.336243 eV Core-core repulsion = 22757.936550 eV Total energy + Delta-G solvation = -4162.399693 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.58888 -40.69817 -39.80447 -38.99297 -37.15255 -36.65036 -35.76926 -35.43827 -35.20966 -34.10510 -33.09148 -31.31531 -29.13151 -27.89145 -26.17340 -24.30328 -23.42835 -22.26326 -20.95314 -20.01588 -19.72815 -19.45090 -18.98907 -18.90799 -18.17468 -17.99477 -17.17148 -17.02734 -16.62254 -16.11564 -15.61851 -15.43160 -14.98849 -14.89145 -14.72160 -14.63980 -14.55513 -14.34207 -13.64175 -13.58625 -13.48167 -13.24825 -12.94238 -12.87241 -12.54068 -12.49936 -12.35099 -12.03611 -11.91929 -11.67980 -11.48043 -11.45081 -11.23105 -10.86245 -10.29847 -9.47164 -9.22016 -7.27508 -1.71525 -0.78493 -0.38307 -0.02555 0.22788 1.18078 1.29247 1.31990 1.38013 1.48497 1.87001 1.93539 1.98826 2.18589 2.20257 2.43439 2.47465 2.83459 3.12575 3.25239 3.30255 3.35769 3.63889 3.93774 4.07935 4.29222 4.32269 4.61137 4.64469 4.78927 5.16318 5.30631 5.52259 5.57719 5.67518 5.72971 5.98078 6.06986 6.11998 6.47628 6.98349 7.05314 7.25012 7.53618 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013140 B = 0.004622 C = 0.004401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2130.451069 B = 6056.745449 C = 6360.816589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C 0.327 3.673 3 C -0.273 4.273 4 C 0.312 3.688 5 N -0.535 5.535 6 C 0.340 3.660 7 C -0.355 4.355 8 H 0.113 0.887 9 C 0.055 3.945 10 N -0.735 5.735 11 Si 0.938 3.062 12 H -0.244 1.244 13 H -0.280 1.280 14 H -0.230 1.230 15 N -0.648 5.648 16 C 0.437 3.563 17 C -0.165 4.165 18 C 0.014 3.986 19 C -0.074 4.074 20 N -0.009 5.009 21 O -0.204 6.204 22 O -0.121 6.121 23 C 0.183 3.817 24 C 0.561 3.439 25 N -0.799 5.799 26 O -0.541 6.541 27 N -0.489 5.489 28 H 0.318 0.682 29 H 0.423 0.577 30 H 0.187 0.813 31 H 0.188 0.812 32 H 0.423 0.577 33 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.100 -3.535 0.839 9.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.224 5.224 2 C 0.018 3.982 3 C -0.291 4.291 4 C 0.004 3.996 5 N -0.217 5.217 6 C 0.238 3.762 7 C -0.382 4.382 8 H 0.131 0.869 9 C -0.177 4.177 10 N -0.352 5.352 11 Si 0.759 3.241 12 H -0.168 1.168 13 H -0.206 1.206 14 H -0.153 1.153 15 N -0.277 5.277 16 C 0.201 3.799 17 C -0.189 4.189 18 C -0.011 4.011 19 C -0.166 4.166 20 N 0.478 4.522 21 O -0.390 6.390 22 O -0.332 6.332 23 C 0.039 3.961 24 C 0.342 3.658 25 N -0.364 5.364 26 O -0.417 6.417 27 N -0.210 5.210 28 H 0.131 0.869 29 H 0.264 0.736 30 H 0.204 0.796 31 H 0.206 0.794 32 H 0.256 0.744 33 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges 8.168 -3.512 -0.606 8.911 hybrid contribution 0.489 -0.418 0.599 0.879 sum 8.657 -3.930 -0.007 9.507 Atomic orbital electron populations 1.81122 1.13042 1.16734 1.11467 1.24759 0.91436 0.90580 0.91397 1.12596 0.82410 1.35526 0.98578 1.25175 0.92283 0.90517 0.91588 1.81137 1.10307 1.17385 1.12896 1.16534 0.78861 0.90124 0.90704 1.20386 1.07002 1.07650 1.03180 0.86941 1.27222 0.99151 0.98029 0.93271 1.69100 1.34229 1.22719 1.09186 0.85788 0.78276 0.77770 0.82295 1.16776 1.20599 1.15277 1.42245 1.04570 1.51883 1.28959 1.18435 0.86978 0.87224 0.87274 1.22160 1.04068 0.97486 0.95236 1.21399 0.87515 0.95661 0.96549 1.21075 0.91713 1.07209 0.96573 1.50137 1.01150 0.97991 1.02933 1.96251 1.79128 1.68311 0.95346 1.96261 1.11692 1.39241 1.86023 1.20670 0.95070 0.91676 0.88694 1.17782 0.85129 0.79581 0.83328 1.43362 1.14155 1.51737 1.27175 1.91028 1.61650 1.51180 1.37861 1.67275 1.04501 1.25884 1.23388 0.86861 0.73585 0.79605 0.79436 0.74415 0.74288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.54 -22.55 18.54 19.00 0.35 -22.20 16 2 C 0.33 12.39 14.11 88.33 1.25 13.63 16 3 C -0.27 -9.10 5.87 -20.19 -0.12 -9.22 16 4 C 0.31 10.96 14.81 88.34 1.31 12.27 16 5 N -0.54 -20.31 18.54 19.00 0.35 -19.96 16 6 C 0.34 10.08 4.33 39.00 0.17 10.25 16 7 C -0.36 -11.43 7.07 23.45 0.17 -11.26 16 8 H 0.11 4.07 7.61 -2.91 -0.02 4.04 16 9 C 0.06 1.76 5.46 85.89 0.47 2.23 16 10 N -0.73 -25.12 13.88 22.16 0.31 -24.81 16 11 Si 0.94 25.10 24.53 68.60 1.68 26.78 16 12 H -0.24 -6.37 6.23 99.48 0.62 -5.75 16 13 H -0.28 -7.82 7.11 99.48 0.71 -7.11 16 14 H -0.23 -5.62 6.55 99.48 0.65 -4.97 16 15 N -0.65 -16.76 2.25 -184.69 -0.41 -17.17 16 16 C 0.44 11.19 5.61 133.20 0.75 11.94 16 17 C -0.16 -4.02 8.88 22.57 0.20 -3.81 16 18 C 0.01 0.34 10.01 22.42 0.22 0.57 16 19 C -0.07 -2.16 6.41 36.73 0.24 -1.92 16 20 N -0.01 -0.31 4.06 -45.62 -0.19 -0.50 16 21 O -0.20 -7.35 19.90 3.51 0.07 -7.28 16 22 O -0.12 -4.49 16.76 11.61 0.19 -4.30 16 23 C 0.18 5.03 6.74 41.84 0.28 5.31 16 24 C 0.56 15.06 7.96 86.88 0.69 15.75 16 25 N -0.80 -13.52 8.86 -175.39 -1.55 -15.08 16 26 O -0.54 -18.49 13.62 19.83 0.27 -18.22 16 27 N -0.49 -12.13 9.13 -182.28 -1.66 -13.79 16 28 H 0.32 9.76 8.27 -92.70 -0.77 8.99 16 29 H 0.42 9.74 7.84 -92.70 -0.73 9.01 16 30 H 0.19 4.35 6.20 -2.91 -0.02 4.33 16 31 H 0.19 3.56 8.06 -2.91 -0.02 3.54 16 32 H 0.42 5.65 8.17 -92.71 -0.76 4.89 16 33 H 0.42 5.24 8.93 -92.71 -0.83 4.41 16 Total: -1.00 -53.28 322.28 3.87 -49.41 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -1.16 Total: 21.38 kcal Atomic # 6 Polarization: 40.10 SS G_CDS: 5.62 Total: 45.72 kcal Atomic # 7 Polarization: -110.70 SS G_CDS: -2.81 Total: -113.51 kcal Atomic # 8 Polarization: -30.33 SS G_CDS: 0.53 Total: -29.80 kcal Atomic # 14 Polarization: 25.10 SS G_CDS: 1.68 Total: 26.78 kcal Total: -53.28 3.87 -49.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169081088.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.455 kcal (2) G-P(sol) polarization free energy of solvation -53.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.414 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds