Wall clock time and date at job start Tue Mar 31 2020 15:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86802 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47147 * 270.00035 * 3 2 1 5 5 H 1.48502 * 109.47167 * 30.00389 * 3 2 1 6 6 H 1.48502 * 109.47211 * 150.00113 * 3 2 1 7 7 C 1.39928 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99822 * 163.98769 * 7 2 1 9 9 C 1.41040 * 120.00413 * 343.98927 * 7 2 1 10 10 C 1.40733 * 120.30134 * 333.68570 * 9 7 2 11 11 C 1.36454 * 119.94898 * 179.97438 * 10 9 7 12 12 C 1.38898 * 120.59565 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.68257 * 179.97438 * 12 11 10 14 14 F 1.39899 * 109.47160 * 359.97438 * 13 12 11 15 15 F 1.39902 * 109.47044 * 119.99686 * 13 12 11 16 16 F 1.39896 * 109.47000 * 239.99459 * 13 12 11 17 17 C 1.38164 * 120.62860 * 359.78116 * 12 11 10 18 18 C 1.38748 * 120.02345 * 0.47056 * 17 12 11 19 19 N 1.38736 * 120.29687 * 179.78737 * 18 17 12 20 20 C 1.46505 * 119.99455 * 359.72706 * 19 18 17 21 21 C 1.50700 * 109.46925 * 179.97438 * 20 19 18 22 22 C 1.35268 * 126.71193 * 90.00012 * 21 20 19 23 23 C 1.41925 * 103.96409 * 180.23834 * 22 21 20 24 24 O 1.35706 * 126.88263 * 179.75276 * 23 22 21 25 25 N 1.30619 * 106.23846 * 359.61459 * 23 22 21 26 26 O 1.20917 * 111.50259 * 0.41112 * 25 23 22 27 27 H 0.96995 * 120.00211 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.03167 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.69992 * 179.97438 * 11 10 9 30 30 H 1.07995 * 119.98522 * 180.23651 * 17 12 11 31 31 H 0.96990 * 120.00337 * 179.72586 * 19 18 17 32 32 H 1.08997 * 109.47241 * 59.99789 * 20 19 18 33 33 H 1.09003 * 109.46719 * 299.99744 * 20 19 18 34 34 H 1.08003 * 128.01889 * 359.97438 * 22 21 20 35 35 H 0.96702 * 113.99817 * 90.00340 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4403 0.7000 7 6 2.0084 -1.2118 -0.0005 8 1 3.0570 -1.2298 -0.2586 9 6 1.3443 -2.4098 0.3358 10 6 0.2137 -2.3838 1.1734 11 6 -0.4236 -3.5471 1.4937 12 6 0.0328 -4.7624 0.9998 13 6 -0.6864 -6.0348 1.3673 14 9 -1.7662 -5.7349 2.2047 15 9 -1.1555 -6.6575 0.2056 16 9 0.1951 -6.8931 2.0330 17 6 1.1374 -4.8155 0.1716 18 6 1.8082 -3.6490 -0.1666 19 7 2.9207 -3.6962 -0.9942 20 6 3.3954 -4.9825 -1.5104 21 6 4.6075 -4.7592 -2.3776 22 6 5.8990 -4.7508 -1.9756 23 6 6.6269 -4.4948 -3.1667 24 8 7.9739 -4.3850 -3.2905 25 7 5.7409 -4.3890 -4.1206 26 8 4.6165 -4.5299 -3.6987 27 1 -0.4850 0.8400 0.0004 28 1 -0.1499 -1.4439 1.5617 29 1 -1.2907 -3.5226 2.1372 30 1 1.4810 -5.7657 -0.2096 31 1 3.3840 -2.8777 -1.2311 32 1 2.6077 -5.4501 -2.1011 33 1 3.6595 -5.6333 -0.6768 34 1 6.2863 -4.8996 -0.9784 35 1 8.4210 -5.2216 -3.4783 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001169492537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:20 Heat of formation + Delta-G solvation = -104.504487 kcal Electronic energy + Delta-G solvation = -27198.941702 eV Core-core repulsion = 22557.626825 eV Total energy + Delta-G solvation = -4641.314877 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -49.34413 -46.88632 -46.81790 -45.05712 -38.39736 -38.08362 -35.48111 -34.01496 -32.94361 -31.96239 -30.39113 -28.52902 -26.79129 -25.80646 -23.65557 -23.56892 -21.91939 -20.90770 -20.39457 -18.62535 -17.80622 -17.68857 -17.63837 -17.49038 -17.32841 -16.96495 -15.68390 -15.25773 -14.97869 -14.63838 -14.31983 -14.14121 -13.83481 -13.77168 -13.63383 -13.31905 -13.24249 -13.08570 -13.03997 -12.80265 -12.73785 -12.35788 -11.99550 -11.84464 -11.42095 -11.25327 -11.12166 -10.80781 -10.62250 -10.20091 -9.99914 -9.87507 -9.58242 -9.42760 -9.24742 -7.74956 -7.03824 -6.62927 -4.49472 1.20915 1.86965 2.36127 2.88470 2.93010 2.96320 2.97143 3.02027 3.27796 3.60904 3.76609 4.25464 4.34134 4.40777 4.81712 4.91257 5.00838 5.06035 5.16286 5.18361 5.51215 5.58860 5.72613 5.76351 6.01563 6.28862 6.63451 6.79066 6.94638 7.04596 7.12384 7.24892 7.48389 7.74911 7.84537 8.05840 8.09755 8.37803 8.50167 8.63469 8.76252 9.95433 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.007803 B = 0.004843 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3587.440539 B = 5780.415896 C = 8893.742188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.077 3.923 3 Si 0.908 3.092 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.260 1.260 7 C -0.449 4.449 8 H 0.078 0.922 9 C 0.099 3.901 10 C -0.152 4.152 11 C -0.084 4.084 12 C -0.278 4.278 13 C 0.514 3.486 14 F -0.192 7.192 15 F -0.195 7.195 16 F -0.196 7.196 17 C -0.123 4.123 18 C 0.107 3.893 19 N -0.744 5.744 20 C 0.213 3.787 21 C -0.018 4.018 22 C -0.230 4.230 23 C 0.195 3.805 24 O -0.450 6.450 25 N -0.373 5.373 26 O 0.123 5.877 27 H 0.285 0.715 28 H 0.126 0.874 29 H 0.100 0.900 30 H 0.098 0.902 31 H 0.401 0.599 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.179 0.821 35 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.882 -7.550 -1.169 10.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.143 4.143 3 Si 0.732 3.268 4 H -0.194 1.194 5 H -0.198 1.198 6 H -0.184 1.184 7 C -0.478 4.478 8 H 0.096 0.904 9 C 0.094 3.906 10 C -0.173 4.173 11 C -0.103 4.103 12 C -0.282 4.282 13 C 0.461 3.539 14 F -0.173 7.173 15 F -0.176 7.176 16 F -0.177 7.177 17 C -0.147 4.147 18 C 0.008 3.992 19 N -0.382 5.382 20 C 0.087 3.913 21 C -0.082 4.082 22 C -0.253 4.253 23 C -0.004 4.004 24 O -0.255 6.255 25 N -0.085 5.085 26 O 0.053 5.947 27 H 0.096 0.904 28 H 0.143 0.857 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.237 0.763 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.197 0.803 35 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges 6.744 -6.771 -2.392 9.851 hybrid contribution 0.813 0.211 0.560 1.009 sum 7.557 -6.560 -1.832 10.173 Atomic orbital electron populations 1.69807 1.07555 1.29782 1.33191 1.25890 0.94794 1.01417 0.92239 0.86294 0.80638 0.80426 0.79431 1.19358 1.19833 1.18352 1.19342 0.97208 0.91003 1.40231 0.90355 1.17385 0.92611 0.90242 0.90402 1.20730 0.98967 0.96722 1.00866 1.20109 0.98980 0.91658 0.99594 1.18752 1.04177 0.90398 1.14846 1.18601 0.76487 0.85281 0.73565 1.93066 1.57982 1.93316 1.72961 1.93126 1.89456 1.85034 1.50029 1.93116 1.69302 1.73689 1.81618 1.19548 0.97272 0.95715 1.02207 1.17535 0.91100 0.93721 0.96796 1.43756 1.32648 1.05767 1.56039 1.19505 0.89137 0.89218 0.93438 1.24467 0.97819 1.01150 0.84736 1.22639 0.92373 1.09209 1.01102 1.21304 0.86223 1.03628 0.89256 1.84854 1.11418 1.36542 1.92676 1.74102 0.90864 1.20344 1.23183 1.84958 1.22571 1.65189 1.22020 0.90387 0.85650 0.88202 0.88362 0.76281 0.90589 0.89610 0.80316 0.74360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.38 10.97 55.55 0.61 -17.77 16 2 C 0.08 1.73 5.16 -17.33 -0.09 1.64 16 3 Si 0.91 17.22 29.59 -169.99 -5.03 12.19 16 4 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 5 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 6 H -0.26 -4.92 7.11 56.52 0.40 -4.51 16 7 C -0.45 -10.42 8.49 -37.89 -0.32 -10.74 16 8 H 0.08 1.72 6.72 -52.48 -0.35 1.37 16 9 C 0.10 2.31 5.57 -106.64 -0.59 1.71 16 10 C -0.15 -3.58 8.62 -39.28 -0.34 -3.92 16 11 C -0.08 -1.84 9.35 -39.98 -0.37 -2.21 16 12 C -0.28 -5.83 5.39 -104.40 -0.56 -6.40 16 13 C 0.51 9.85 3.31 36.01 0.12 9.97 16 14 F -0.19 -3.61 15.94 2.25 0.04 -3.58 16 15 F -0.19 -3.67 17.23 2.25 0.04 -3.63 16 16 F -0.20 -3.60 17.23 2.25 0.04 -3.56 16 17 C -0.12 -2.49 8.82 -39.42 -0.35 -2.84 16 18 C 0.11 2.23 6.68 -83.29 -0.56 1.67 16 19 N -0.74 -13.04 5.62 -59.37 -0.33 -13.37 16 20 C 0.21 2.88 5.46 -5.19 -0.03 2.85 16 21 C -0.02 -0.24 6.85 -35.37 -0.24 -0.48 16 22 C -0.23 -2.72 11.10 -39.23 -0.44 -3.15 16 23 C 0.20 2.52 8.62 -16.66 -0.14 2.38 16 24 O -0.45 -4.83 13.65 -18.82 -0.26 -5.09 16 25 N -0.37 -5.52 12.10 30.38 0.37 -5.15 16 26 O 0.12 1.78 11.19 17.05 0.19 1.97 16 27 H 0.29 6.14 8.30 -40.82 -0.34 5.81 16 28 H 0.13 3.05 6.22 -52.49 -0.33 2.72 16 29 H 0.10 2.04 7.12 -52.48 -0.37 1.66 16 30 H 0.10 1.74 6.73 -52.49 -0.35 1.39 16 31 H 0.40 7.20 6.71 -40.82 -0.27 6.93 16 32 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 33 H 0.09 1.03 7.95 -51.93 -0.41 0.62 16 34 H 0.18 1.72 8.06 -52.48 -0.42 1.30 16 35 H 0.40 1.98 9.06 45.56 0.41 2.39 16 LS Contribution 323.07 15.07 4.87 4.87 Total: -1.00 -26.78 323.07 -5.04 -31.81 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -1.65 Total: 10.82 kcal Atomic # 6 Polarization: -5.60 SS G_CDS: -3.92 Total: -9.51 kcal Atomic # 7 Polarization: -36.93 SS G_CDS: 0.64 Total: -36.29 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: -0.07 Total: -3.12 kcal Atomic # 9 Polarization: -10.89 SS G_CDS: 0.11 Total: -10.77 kcal Atomic # 14 Polarization: 17.22 SS G_CDS: -5.03 Total: 12.19 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.78 -5.04 -31.81 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169492537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.691 kcal (2) G-P(sol) polarization free energy of solvation -26.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds