Wall clock time and date at job start Tue Mar 31 2020 15:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30873 * 1 3 3 Si 1.86802 * 119.99838 * 2 1 4 4 H 1.48500 * 109.47147 * 270.00035 * 3 2 1 5 5 H 1.48502 * 109.47167 * 30.00389 * 3 2 1 6 6 H 1.48502 * 109.47211 * 150.00113 * 3 2 1 7 7 C 1.39928 * 120.00052 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99822 * 163.98769 * 7 2 1 9 9 C 1.41040 * 120.00413 * 343.98927 * 7 2 1 10 10 C 1.40733 * 120.30134 * 333.68570 * 9 7 2 11 11 C 1.36454 * 119.94898 * 179.97438 * 10 9 7 12 12 C 1.38898 * 120.59565 * 359.97438 * 11 10 9 13 13 C 1.50705 * 119.68257 * 179.97438 * 12 11 10 14 14 F 1.39899 * 109.47160 * 359.97438 * 13 12 11 15 15 F 1.39902 * 109.47044 * 119.99686 * 13 12 11 16 16 F 1.39896 * 109.47000 * 239.99459 * 13 12 11 17 17 C 1.38164 * 120.62860 * 359.78116 * 12 11 10 18 18 C 1.38748 * 120.02345 * 0.47056 * 17 12 11 19 19 N 1.38736 * 120.29687 * 179.78737 * 18 17 12 20 20 C 1.46505 * 119.99455 * 359.72706 * 19 18 17 21 21 C 1.50700 * 109.46925 * 179.97438 * 20 19 18 22 22 C 1.35268 * 126.71193 * 90.00012 * 21 20 19 23 23 C 1.41925 * 103.96409 * 180.23834 * 22 21 20 24 24 O 1.35706 * 126.88263 * 179.75276 * 23 22 21 25 25 N 1.30619 * 106.23846 * 359.61459 * 23 22 21 26 26 O 1.20917 * 111.50259 * 0.41112 * 25 23 22 27 27 H 0.96995 * 120.00211 * 359.97438 * 1 2 3 28 28 H 1.07997 * 120.03167 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.69992 * 179.97438 * 11 10 9 30 30 H 1.07995 * 119.98522 * 180.23651 * 17 12 11 31 31 H 0.96990 * 120.00337 * 179.72586 * 19 18 17 32 32 H 1.08997 * 109.47241 * 59.99789 * 20 19 18 33 33 H 1.09003 * 109.46719 * 299.99744 * 20 19 18 34 34 H 1.08003 * 128.01889 * 359.97438 * 22 21 20 35 35 H 0.96702 * 113.99817 * 90.00340 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 2.4902 2.0465 -1.4001 5 1 1.4402 2.6527 0.7001 6 1 3.5403 1.4403 0.7000 7 6 2.0084 -1.2118 -0.0005 8 1 3.0570 -1.2298 -0.2586 9 6 1.3443 -2.4098 0.3358 10 6 0.2137 -2.3838 1.1734 11 6 -0.4236 -3.5471 1.4937 12 6 0.0328 -4.7624 0.9998 13 6 -0.6864 -6.0348 1.3673 14 9 -1.7662 -5.7349 2.2047 15 9 -1.1555 -6.6575 0.2056 16 9 0.1951 -6.8931 2.0330 17 6 1.1374 -4.8155 0.1716 18 6 1.8082 -3.6490 -0.1666 19 7 2.9207 -3.6962 -0.9942 20 6 3.3954 -4.9825 -1.5104 21 6 4.6075 -4.7592 -2.3776 22 6 5.8990 -4.7508 -1.9756 23 6 6.6269 -4.4948 -3.1667 24 8 7.9739 -4.3850 -3.2905 25 7 5.7409 -4.3890 -4.1206 26 8 4.6165 -4.5299 -3.6987 27 1 -0.4850 0.8400 0.0004 28 1 -0.1499 -1.4439 1.5617 29 1 -1.2907 -3.5226 2.1372 30 1 1.4810 -5.7657 -0.2096 31 1 3.3840 -2.8777 -1.2311 32 1 2.6077 -5.4501 -2.1011 33 1 3.6595 -5.6333 -0.6768 34 1 6.2863 -4.8996 -0.9784 35 1 8.4210 -5.2216 -3.4783 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001169492537.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:17:20 Heat of formation + Delta-G solvation = -122.177430 kcal Electronic energy + Delta-G solvation = -27199.708058 eV Core-core repulsion = 22557.626825 eV Total energy + Delta-G solvation = -4642.081233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 328.082 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.86808 -48.40670 -48.32892 -46.06331 -39.99613 -38.94465 -36.83301 -35.69315 -34.00272 -33.12937 -32.01599 -30.00965 -28.43253 -27.08587 -25.25759 -24.56054 -23.11895 -22.34132 -21.95356 -19.72457 -19.27773 -19.20625 -19.03302 -18.96383 -18.65512 -17.96496 -17.18997 -16.63455 -16.17908 -15.95972 -15.75397 -15.38126 -15.26964 -15.17549 -14.87186 -14.82918 -14.59464 -14.54725 -14.37609 -14.32511 -14.17198 -13.88350 -13.42535 -13.23264 -12.98883 -12.83642 -12.67290 -12.16678 -11.76782 -11.63124 -11.50899 -11.14634 -11.09645 -10.74463 -10.67372 -9.46722 -8.71062 -8.19864 -6.21471 0.19719 0.68805 0.95251 1.24796 1.41040 1.45325 1.53188 1.90372 2.05458 2.19121 2.40320 2.65074 2.96855 3.31714 3.36106 3.47395 3.53925 3.83393 3.91661 4.15954 4.23512 4.40969 4.59738 4.61468 4.72080 4.88568 5.00884 5.12431 5.27953 5.47361 5.56461 5.80820 6.03825 6.16204 6.41851 6.42092 6.72917 6.85505 7.03109 7.06824 7.14967 8.30341 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.007803 B = 0.004843 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3587.440539 B = 5780.415896 C = 8893.742188 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.814 5.814 2 C 0.039 3.961 3 Si 0.972 3.028 4 H -0.268 1.268 5 H -0.270 1.270 6 H -0.258 1.258 7 C -0.472 4.472 8 H 0.083 0.917 9 C 0.068 3.932 10 C -0.171 4.171 11 C -0.096 4.096 12 C -0.278 4.278 13 C 0.522 3.478 14 F -0.190 7.190 15 F -0.190 7.190 16 F -0.188 7.188 17 C -0.130 4.130 18 C 0.114 3.886 19 N -0.744 5.744 20 C 0.213 3.787 21 C -0.023 4.023 22 C -0.217 4.217 23 C 0.198 3.802 24 O -0.457 6.457 25 N -0.401 5.401 26 O 0.106 5.894 27 H 0.289 0.711 28 H 0.108 0.892 29 H 0.108 0.892 30 H 0.126 0.874 31 H 0.397 0.603 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.204 0.796 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.335 -8.671 -1.157 12.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.439 5.439 2 C -0.177 4.177 3 Si 0.794 3.206 4 H -0.193 1.193 5 H -0.194 1.194 6 H -0.181 1.181 7 C -0.501 4.501 8 H 0.101 0.899 9 C 0.063 3.937 10 C -0.192 4.192 11 C -0.116 4.116 12 C -0.281 4.281 13 C 0.468 3.532 14 F -0.171 7.171 15 F -0.172 7.172 16 F -0.169 7.169 17 C -0.154 4.154 18 C 0.014 3.986 19 N -0.379 5.379 20 C 0.089 3.911 21 C -0.087 4.087 22 C -0.240 4.240 23 C -0.001 4.001 24 O -0.266 6.266 25 N -0.115 5.115 26 O 0.038 5.962 27 H 0.100 0.900 28 H 0.126 0.874 29 H 0.126 0.874 30 H 0.144 0.856 31 H 0.233 0.767 32 H 0.101 0.899 33 H 0.128 0.872 34 H 0.221 0.779 35 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges 8.216 -7.939 -2.390 11.673 hybrid contribution 0.426 0.423 0.537 0.805 sum 8.642 -7.516 -1.853 11.602 Atomic orbital electron populations 1.69867 1.08828 1.30677 1.34570 1.26611 0.95361 1.04149 0.91599 0.85329 0.79326 0.76734 0.79195 1.19305 1.19425 1.18147 1.19561 0.97562 0.91670 1.41342 0.89873 1.17690 0.93196 0.91616 0.91198 1.20679 0.99976 0.96636 1.01941 1.20217 0.99406 0.91791 1.00180 1.19019 1.04217 0.90811 1.14080 1.18282 0.76443 0.84711 0.73715 1.93074 1.57850 1.93322 1.72883 1.93136 1.89389 1.84822 1.49851 1.93132 1.69072 1.73269 1.81444 1.19815 0.96964 0.96628 1.02034 1.17621 0.91586 0.93121 0.96303 1.43864 1.31549 1.07341 1.55174 1.19678 0.89640 0.87521 0.94303 1.24398 0.98042 1.01866 0.84370 1.22927 0.91635 1.07695 1.01727 1.21508 0.86932 1.02402 0.89268 1.84807 1.10375 1.38738 1.92651 1.74094 0.91303 1.21846 1.24298 1.84926 1.22656 1.65875 1.22753 0.90010 0.87415 0.87406 0.85581 0.76724 0.89901 0.87203 0.77923 0.71426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.50 10.97 21.83 0.24 -39.26 16 2 C 0.04 1.81 5.16 85.25 0.44 2.25 16 3 Si 0.97 35.59 29.59 68.60 2.03 37.62 16 4 H -0.27 -9.70 7.11 99.48 0.71 -8.99 16 5 H -0.27 -9.58 7.11 99.48 0.71 -8.88 16 6 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 7 C -0.47 -22.25 8.49 23.37 0.20 -22.05 16 8 H 0.08 3.68 6.72 -2.91 -0.02 3.66 16 9 C 0.07 3.22 5.57 -21.17 -0.12 3.10 16 10 C -0.17 -8.28 8.62 22.46 0.19 -8.09 16 11 C -0.10 -4.23 9.35 22.01 0.21 -4.03 16 12 C -0.28 -11.30 5.39 -19.72 -0.11 -11.41 16 13 C 0.52 18.95 3.31 71.24 0.24 19.18 16 14 F -0.19 -6.85 15.94 44.97 0.72 -6.13 16 15 F -0.19 -6.74 17.23 44.97 0.77 -5.96 16 16 F -0.19 -6.42 17.23 44.97 0.77 -5.65 16 17 C -0.13 -5.02 8.82 22.37 0.20 -4.82 16 18 C 0.11 4.66 6.68 38.99 0.26 4.92 16 19 N -0.74 -25.03 5.62 -341.75 -1.92 -26.95 16 20 C 0.21 5.24 5.46 85.63 0.47 5.71 16 21 C -0.02 -0.56 6.85 25.00 0.17 -0.39 16 22 C -0.22 -4.55 11.10 22.50 0.25 -4.30 16 23 C 0.20 4.72 8.62 85.79 0.74 5.46 16 24 O -0.46 -8.72 13.65 -90.27 -1.23 -9.95 16 25 N -0.40 -11.40 12.10 -172.59 -2.09 -13.49 16 26 O 0.11 2.96 11.19 71.20 0.80 3.76 16 27 H 0.29 12.82 8.30 -92.71 -0.77 12.05 16 28 H 0.11 5.49 6.22 -2.91 -0.02 5.47 16 29 H 0.11 4.43 7.12 -2.91 -0.02 4.41 16 30 H 0.13 4.07 6.73 -2.91 -0.02 4.05 16 31 H 0.40 13.96 6.71 -92.72 -0.62 13.34 16 32 H 0.08 1.97 7.93 -2.39 -0.02 1.95 16 33 H 0.11 2.24 7.95 -2.39 -0.02 2.22 16 34 H 0.20 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.43 3.06 9.06 -74.06 -0.67 2.39 16 Total: -1.00 -57.34 323.07 3.15 -54.19 By element: Atomic # 1 Polarization: 26.36 SS G_CDS: -0.08 Total: 26.28 kcal Atomic # 6 Polarization: -17.59 SS G_CDS: 3.14 Total: -14.46 kcal Atomic # 7 Polarization: -75.93 SS G_CDS: -3.77 Total: -79.70 kcal Atomic # 8 Polarization: -5.76 SS G_CDS: -0.44 Total: -6.19 kcal Atomic # 9 Polarization: -20.01 SS G_CDS: 2.27 Total: -17.74 kcal Atomic # 14 Polarization: 35.59 SS G_CDS: 2.03 Total: 37.62 kcal Total: -57.34 3.15 -54.19 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001169492537.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.984 kcal (2) G-P(sol) polarization free energy of solvation -57.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.177 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds