Wall clock time and date at job start Tue Mar 31 2020 15:09:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30902 * 1 3 3 Si 1.86803 * 119.99781 * 2 1 4 4 H 1.48492 * 109.47069 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.46983 * 119.99779 * 3 2 1 6 6 H 1.48495 * 109.46995 * 239.99423 * 3 2 1 7 7 C 1.39908 * 119.99976 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99982 * 169.72885 * 7 2 1 9 9 C 1.41013 * 120.00029 * 349.72569 * 7 2 1 10 10 C 1.40749 * 120.29255 * 330.39290 * 9 7 2 11 11 C 1.36411 * 119.96474 * 179.74303 * 10 9 7 12 12 C 1.39065 * 120.57407 * 0.55574 * 11 10 9 13 13 Cl 1.73599 * 119.69957 * 179.71650 * 12 11 10 14 14 C 1.38316 * 120.59587 * 359.69382 * 12 11 10 15 15 C 1.38678 * 120.01113 * 0.02562 * 14 12 11 16 16 N 1.38753 * 120.28146 * 180.02562 * 15 14 12 17 17 C 1.46495 * 119.99786 * 6.06039 * 16 15 14 18 18 H 1.08999 * 110.08117 * 15.06274 * 17 16 15 19 19 N 1.46726 * 110.10149 * 253.50037 * 17 16 15 20 20 C 1.34550 * 108.68380 * 240.82766 * 19 17 16 21 21 O 1.21551 * 124.83628 * 179.97438 * 20 19 17 22 22 C 1.47544 * 110.30591 * 359.94692 * 20 19 17 23 23 C 1.39617 * 132.34671 * 180.02562 * 22 20 19 24 24 C 1.37940 * 119.82968 * 179.97438 * 23 22 20 25 25 C 1.38387 * 120.32030 * 0.02562 * 24 23 22 26 26 C 1.38475 * 120.18723 * 359.97438 * 25 24 23 27 27 C 1.37575 * 119.95336 * 359.97438 * 26 25 24 28 28 H 0.97002 * 119.99930 * 0.02562 * 1 2 3 29 29 H 1.08000 * 120.02145 * 0.02562 * 10 9 7 30 30 H 1.07997 * 119.71548 * 180.27374 * 11 10 9 31 31 H 1.07992 * 119.99101 * 179.97438 * 14 12 11 32 32 H 0.96998 * 119.99919 * 186.06162 * 16 15 14 33 33 H 0.97003 * 125.63000 * 60.76477 * 19 17 16 34 34 H 1.08004 * 120.08770 * 0.02562 * 23 22 20 35 35 H 1.08002 * 119.84334 * 179.97438 * 24 23 22 36 36 H 1.07998 * 119.90878 * 179.97438 * 25 24 23 37 37 H 1.07995 * 120.01978 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 1.2780 2.7464 -0.0006 5 1 3.0967 1.6965 1.2125 6 1 3.0968 1.6964 -1.2124 7 6 2.0086 -1.2116 0.0005 8 1 3.0755 -1.2192 -0.1662 9 6 1.3204 -2.4230 0.2189 10 6 0.1590 -2.4464 1.0136 11 6 -0.5043 -3.6210 1.2161 12 6 -0.0371 -4.8035 0.6528 13 17 -0.8951 -6.2867 0.9313 14 6 1.1047 -4.8084 -0.1279 15 6 1.7950 -3.6272 -0.3545 16 7 2.9407 -3.6255 -1.1372 17 6 3.3521 -4.8455 -1.8361 18 1 2.5304 -5.5615 -1.8544 19 7 4.5208 -5.4361 -1.1743 20 6 5.5416 -5.4686 -2.0502 21 8 6.6514 -5.9008 -1.8074 22 6 5.1211 -4.9054 -3.3475 23 6 5.7965 -4.7191 -4.5552 24 6 5.1393 -4.1556 -5.6291 25 6 3.8141 -3.7735 -5.5149 26 6 3.1375 -3.9551 -4.3205 27 6 3.7835 -4.5172 -3.2437 28 1 -0.4850 0.8401 -0.0004 29 1 -0.2094 -1.5342 1.4591 30 1 -1.3976 -3.6336 1.8230 31 1 1.4590 -5.7323 -0.5603 32 1 3.4693 -2.8166 -1.2215 33 1 4.5521 -5.7501 -0.2570 34 1 6.8307 -5.0163 -4.6486 35 1 5.6617 -4.0110 -6.5632 36 1 3.3061 -3.3326 -6.3598 37 1 2.1033 -3.6563 -4.2345 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171127585.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:09 Heat of formation + Delta-G solvation = 9.993898 kcal Electronic energy + Delta-G solvation = -24530.161961 eV Core-core repulsion = 20876.378012 eV Total energy + Delta-G solvation = -3653.783949 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.25697 -39.87996 -39.08636 -37.58722 -37.00770 -35.37600 -34.66390 -32.02383 -31.66122 -31.39283 -29.81754 -27.12374 -26.32640 -24.88261 -23.28265 -22.37037 -21.99664 -21.30933 -19.30002 -18.66182 -18.10009 -17.84073 -17.28841 -16.97550 -16.58845 -16.16675 -15.74930 -15.50756 -15.22247 -14.90591 -14.83326 -14.66880 -14.52522 -14.06169 -13.70939 -13.53507 -13.34872 -13.15438 -12.82909 -12.76168 -12.49064 -12.28085 -12.05264 -11.87559 -11.55585 -11.44994 -11.20087 -11.02978 -10.80977 -10.56439 -9.98307 -9.91814 -9.22151 -8.61324 -8.29457 -6.16580 -0.30016 0.29310 0.84264 1.12803 1.42186 1.49147 1.50996 1.65577 1.70703 2.10842 2.22958 2.70458 2.78353 2.94654 3.05691 3.37293 3.71763 3.85958 4.03441 4.17990 4.37621 4.44303 4.50738 4.60262 4.69930 4.91807 4.98295 5.08384 5.16357 5.29385 5.38381 5.41517 5.43915 5.50729 5.65438 5.82159 5.84704 5.88701 6.02548 6.15148 6.37987 6.75175 6.86418 6.99094 7.04152 7.12710 8.41497 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.008415 B = 0.005091 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.421327 B = 5498.141392 C = 7632.913749 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.040 3.960 3 Si 0.970 3.030 4 H -0.274 1.274 5 H -0.267 1.267 6 H -0.261 1.261 7 C -0.480 4.480 8 H 0.075 0.925 9 C 0.050 3.950 10 C -0.146 4.146 11 C -0.134 4.134 12 C -0.101 4.101 13 Cl -0.106 7.106 14 C -0.166 4.166 15 C 0.123 3.877 16 N -0.723 5.723 17 C 0.397 3.603 18 H 0.123 0.877 19 N -0.719 5.719 20 C 0.559 3.441 21 O -0.572 6.572 22 C -0.177 4.177 23 C -0.058 4.058 24 C -0.113 4.113 25 C -0.080 4.080 26 C -0.093 4.093 27 C -0.094 4.094 28 H 0.285 0.715 29 H 0.110 0.890 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.398 0.602 33 H 0.424 0.576 34 H 0.139 0.861 35 H 0.169 0.831 36 H 0.166 0.834 37 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.267 -4.379 -10.278 11.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.457 5.457 2 C -0.175 4.175 3 Si 0.793 3.207 4 H -0.198 1.198 5 H -0.192 1.192 6 H -0.186 1.186 7 C -0.510 4.510 8 H 0.093 0.907 9 C 0.046 3.954 10 C -0.167 4.167 11 C -0.154 4.154 12 C -0.129 4.129 13 Cl -0.078 7.078 14 C -0.189 4.189 15 C 0.023 3.977 16 N -0.358 5.358 17 C 0.206 3.794 18 H 0.140 0.860 19 N -0.377 5.377 20 C 0.348 3.652 21 O -0.453 6.453 22 C -0.180 4.180 23 C -0.077 4.077 24 C -0.131 4.131 25 C -0.098 4.098 26 C -0.111 4.111 27 C -0.097 4.097 28 H 0.095 0.905 29 H 0.128 0.872 30 H 0.124 0.876 31 H 0.141 0.859 32 H 0.234 0.766 33 H 0.266 0.734 34 H 0.157 0.843 35 H 0.186 0.814 36 H 0.183 0.817 37 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.525 -4.720 -10.237 12.147 hybrid contribution 0.147 0.808 0.975 1.274 sum 4.671 -3.913 -9.263 11.087 Atomic orbital electron populations 1.69849 1.08476 1.30097 1.37260 1.26469 0.95406 1.03655 0.91922 0.85407 0.78736 0.76863 0.79693 1.19830 1.19184 1.18586 1.19328 0.95459 0.91107 1.45108 0.90714 1.17556 0.93883 0.91569 0.92412 1.20755 0.98686 0.96278 1.00960 1.20352 1.00637 0.91692 1.02721 1.20098 0.98064 0.85731 1.09042 1.98238 1.77657 1.35890 1.95971 1.20069 0.97522 0.96371 1.04967 1.17739 0.90444 0.93332 0.96207 1.44204 1.26766 1.11575 1.53304 1.19541 0.87716 0.86971 0.85150 0.85996 1.46762 1.13096 1.62202 1.15608 1.18692 0.83384 0.77149 0.86008 1.90745 1.22392 1.49595 1.82532 1.20478 0.96096 1.06051 0.95403 1.21128 1.00450 0.95714 0.90367 1.21548 0.94859 0.97425 0.99229 1.21777 0.94616 0.96176 0.97202 1.20631 1.01126 0.97718 0.91665 1.20561 0.94485 0.99648 0.94979 0.90468 0.87248 0.87557 0.85905 0.76599 0.73420 0.84274 0.81397 0.81681 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -40.34 10.87 21.82 0.24 -40.10 16 2 C 0.04 1.83 5.26 85.24 0.45 2.27 16 3 Si 0.97 36.03 29.57 68.60 2.03 38.06 16 4 H -0.27 -9.86 7.11 99.48 0.71 -9.15 16 5 H -0.27 -9.92 7.11 99.48 0.71 -9.21 16 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 16 7 C -0.48 -22.74 8.47 23.36 0.20 -22.55 16 8 H 0.07 3.39 6.74 -2.91 -0.02 3.37 16 9 C 0.05 2.39 5.56 -21.16 -0.12 2.27 16 10 C -0.15 -7.01 8.59 22.46 0.19 -6.81 16 11 C -0.13 -5.83 9.74 22.04 0.21 -5.61 16 12 C -0.10 -4.07 6.33 22.49 0.14 -3.93 16 13 Cl -0.11 -3.64 28.94 -2.72 -0.08 -3.72 16 14 C -0.17 -6.36 8.97 22.39 0.20 -6.16 16 15 C 0.12 5.01 6.67 38.97 0.26 5.27 16 16 N -0.72 -25.14 5.28 -330.35 -1.74 -26.89 16 17 C 0.40 11.55 4.07 128.78 0.52 12.07 16 18 H 0.12 3.40 5.75 -2.39 -0.01 3.38 16 19 N -0.72 -21.03 6.28 -458.68 -2.88 -23.91 16 20 C 0.56 18.05 8.35 86.73 0.72 18.78 16 21 O -0.57 -21.95 18.04 -3.88 -0.07 -22.02 16 22 C -0.18 -4.85 6.26 -20.14 -0.13 -4.97 16 23 C -0.06 -1.24 10.10 22.53 0.23 -1.01 16 24 C -0.11 -1.76 10.02 22.23 0.22 -1.54 16 25 C -0.08 -1.31 10.05 22.36 0.22 -1.08 16 26 C -0.09 -2.08 10.03 22.17 0.22 -1.86 16 27 C -0.09 -2.50 5.97 -19.63 -0.12 -2.62 16 28 H 0.28 12.79 8.30 -92.71 -0.77 12.02 16 29 H 0.11 5.60 6.26 -2.91 -0.02 5.58 16 30 H 0.11 4.31 8.06 -2.91 -0.02 4.29 16 31 H 0.12 4.10 6.01 -2.91 -0.02 4.09 16 32 H 0.40 14.56 7.08 -92.71 -0.66 13.91 16 33 H 0.42 11.70 8.96 -92.71 -0.83 10.87 16 34 H 0.14 2.68 8.06 -2.91 -0.02 2.65 16 35 H 0.17 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.17 1.63 8.06 -2.91 -0.02 1.61 16 37 H 0.13 3.01 8.06 -2.91 -0.02 2.99 16 Total: -1.00 -57.59 334.14 0.61 -56.98 By element: Atomic # 1 Polarization: 39.40 SS G_CDS: -0.32 Total: 39.08 kcal Atomic # 6 Polarization: -20.92 SS G_CDS: 3.44 Total: -17.48 kcal Atomic # 7 Polarization: -86.51 SS G_CDS: -4.39 Total: -90.90 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.07 Total: -22.02 kcal Atomic # 14 Polarization: 36.03 SS G_CDS: 2.03 Total: 38.06 kcal Atomic # 17 Polarization: -3.64 SS G_CDS: -0.08 Total: -3.72 kcal Total: -57.59 0.61 -56.98 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171127585.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.976 kcal (2) G-P(sol) polarization free energy of solvation -57.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.982 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds