Wall clock time and date at job start Tue Mar 31 2020 15:09:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30900 * 1 3 3 Si 1.86797 * 120.00352 * 2 1 4 4 H 1.48502 * 109.47115 * 89.99907 * 3 2 1 5 5 H 1.48502 * 109.47284 * 210.00227 * 3 2 1 6 6 H 1.48504 * 109.46823 * 330.00009 * 3 2 1 7 7 C 1.39913 * 119.99599 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00460 * 17.41969 * 7 2 1 9 9 C 1.41019 * 119.99600 * 197.41783 * 7 2 1 10 10 C 1.40751 * 120.29400 * 29.10165 * 9 7 2 11 11 C 1.36404 * 119.96557 * 179.73673 * 10 9 7 12 12 C 1.39056 * 120.57844 * 0.56489 * 11 10 9 13 13 Cl 1.73597 * 119.70497 * 179.71400 * 12 11 10 14 14 C 1.38320 * 120.59240 * 359.68444 * 12 11 10 15 15 C 1.38680 * 120.01447 * 0.02970 * 14 12 11 16 16 N 1.38746 * 120.28527 * 180.02562 * 15 14 12 17 17 C 1.46503 * 119.99917 * 359.97438 * 16 15 14 18 18 C 1.50696 * 109.47123 * 179.97438 * 17 16 15 19 19 C 1.37956 * 120.06499 * 259.99928 * 18 17 16 20 20 C 1.38668 * 120.47574 * 180.02562 * 19 18 17 21 21 C 1.37726 * 120.42545 * 359.97438 * 20 19 18 22 22 C 1.39547 * 119.72804 * 359.97438 * 21 20 19 23 23 N 1.36059 * 133.81024 * 180.02562 * 22 21 20 24 24 C 1.29916 * 108.79507 * 179.25102 * 23 22 21 25 25 O 1.34225 * 110.29956 * 0.66286 * 24 23 22 26 26 C 1.35121 * 108.16234 * 359.43167 * 25 24 23 27 27 H 0.97000 * 119.99787 * 175.40610 * 1 2 3 28 28 H 1.08004 * 120.01295 * 0.02562 * 10 9 7 29 29 H 1.08003 * 119.71311 * 180.26907 * 11 10 9 30 30 H 1.07996 * 119.99089 * 180.02562 * 14 12 11 31 31 H 0.96996 * 120.00611 * 179.97438 * 16 15 14 32 32 H 1.08999 * 109.47335 * 300.00352 * 17 16 15 33 33 H 1.08998 * 109.47011 * 59.99985 * 17 16 15 34 34 H 1.07998 * 119.75793 * 0.02755 * 19 18 17 35 35 H 1.08002 * 119.78957 * 179.97438 * 20 19 18 36 36 H 1.07999 * 120.13364 * 179.97438 * 21 20 19 37 37 H 1.08004 * 124.84335 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0463 1.4001 5 1 3.5406 1.4401 -0.7001 6 1 1.4405 2.6526 -0.7001 7 6 2.0085 -1.2117 -0.0005 8 1 1.5057 -2.1254 -0.2809 9 6 3.3702 -1.2399 0.3650 10 6 3.8814 -0.2931 1.2724 11 6 5.1985 -0.3299 1.6255 12 6 6.0486 -1.2898 1.0874 13 17 7.7225 -1.3111 1.5470 14 6 5.5723 -2.2282 0.1898 15 6 4.2362 -2.2172 -0.1818 16 7 3.7524 -3.1562 -1.0813 17 6 4.6541 -4.1648 -1.6434 18 6 3.8862 -5.0566 -2.5845 19 6 3.4536 -6.2968 -2.1629 20 6 2.7467 -7.1246 -3.0220 21 6 2.4666 -6.7190 -4.3081 22 6 2.8969 -5.4666 -4.7479 23 7 2.7842 -4.7913 -5.9237 24 6 3.3591 -3.6331 -5.7981 25 8 3.8775 -3.5017 -4.5670 26 6 3.6069 -4.6293 -3.8734 27 1 -0.4850 -0.8374 -0.0673 28 1 3.2302 0.4591 1.6924 29 1 5.5855 0.3959 2.3254 30 1 6.2410 -2.9697 -0.2217 31 1 2.8171 -3.1449 -1.3382 32 1 5.4592 -3.6700 -2.1866 33 1 5.0754 -4.7651 -0.8370 34 1 3.6670 -6.6254 -1.1565 35 1 2.4137 -8.0936 -2.6805 36 1 1.9160 -7.3677 -4.9733 37 1 3.4207 -2.8870 -6.5766 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171457990.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:48 Heat of formation + Delta-G solvation = 31.695835 kcal Electronic energy + Delta-G solvation = -24381.351079 eV Core-core repulsion = 20728.508196 eV Total energy + Delta-G solvation = -3652.842883 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -44.28895 -40.26932 -39.25941 -37.29780 -36.66961 -35.56439 -35.32733 -32.61803 -31.94341 -30.84494 -29.81277 -27.05462 -26.21543 -24.66820 -24.07515 -23.25723 -21.97997 -21.73853 -20.08865 -19.14530 -18.56990 -18.19960 -17.71418 -17.22385 -16.73334 -16.22837 -15.93483 -15.74531 -15.24222 -15.13629 -14.84071 -14.67243 -14.41432 -14.32077 -13.98726 -13.73438 -13.48757 -13.16465 -12.84692 -12.62151 -12.61408 -12.47922 -12.32381 -12.01806 -11.80605 -11.64909 -11.56987 -11.27948 -10.88209 -10.65904 -9.86222 -9.55985 -9.54579 -9.21085 -8.35378 -6.33972 -0.39681 0.13158 0.65660 0.93659 1.35742 1.38813 1.54297 1.59511 1.63278 1.76803 2.19506 2.46176 2.62520 2.97725 3.02749 3.32271 3.44629 3.74634 3.92207 4.09803 4.15224 4.19578 4.34869 4.45848 4.52370 4.55419 4.76382 4.82145 4.93110 5.02551 5.11392 5.15648 5.27751 5.31187 5.32286 5.45012 5.61822 5.64331 5.79997 5.94585 6.19618 6.48005 6.50124 6.65645 6.92791 6.97469 8.06337 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.010215 B = 0.004407 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2740.300147 B = 6351.954167 C = 7941.176370 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.851 5.851 2 C 0.011 3.989 3 Si 1.100 2.900 4 H -0.258 1.258 5 H -0.265 1.265 6 H -0.287 1.287 7 C -0.531 4.531 8 H 0.051 0.949 9 C 0.033 3.967 10 C -0.220 4.220 11 C -0.116 4.116 12 C -0.094 4.094 13 Cl -0.096 7.096 14 C -0.164 4.164 15 C 0.137 3.863 16 N -0.738 5.738 17 C 0.177 3.823 18 C -0.090 4.090 19 C -0.073 4.073 20 C -0.109 4.109 21 C -0.067 4.067 22 C -0.007 4.007 23 N -0.515 5.515 24 C 0.237 3.763 25 O -0.229 6.229 26 C 0.001 3.999 27 H 0.276 0.724 28 H 0.111 0.889 29 H 0.125 0.875 30 H 0.126 0.874 31 H 0.392 0.608 32 H 0.054 0.946 33 H 0.083 0.917 34 H 0.165 0.835 35 H 0.177 0.823 36 H 0.154 0.846 37 H 0.300 0.700 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.759 -10.523 -6.960 14.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.201 4.201 3 Si 0.923 3.077 4 H -0.184 1.184 5 H -0.190 1.190 6 H -0.214 1.214 7 C -0.561 4.561 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.241 4.241 11 C -0.137 4.137 12 C -0.122 4.122 13 Cl -0.067 7.067 14 C -0.189 4.189 15 C 0.035 3.965 16 N -0.369 5.369 17 C 0.053 3.947 18 C -0.091 4.091 19 C -0.091 4.091 20 C -0.127 4.127 21 C -0.086 4.086 22 C -0.118 4.118 23 N -0.244 5.244 24 C 0.007 3.993 25 O -0.120 6.120 26 C -0.050 4.050 27 H 0.086 0.914 28 H 0.128 0.872 29 H 0.143 0.857 30 H 0.144 0.856 31 H 0.226 0.774 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.182 0.818 35 H 0.195 0.805 36 H 0.172 0.828 37 H 0.315 0.685 Dipole moment (debyes) X Y Z Total from point charges 7.464 -9.295 -7.460 14.062 hybrid contribution -0.246 -1.270 0.208 1.310 sum 7.217 -10.565 -7.252 14.707 Atomic orbital electron populations 1.70645 1.08526 1.32267 1.36206 1.28058 0.95722 1.06446 0.89898 0.83230 0.74596 0.71018 0.78860 1.18366 1.18950 1.21436 1.20185 0.95702 0.95830 1.44429 0.93046 1.17648 0.92991 0.93274 0.93340 1.20663 0.95961 1.04192 1.03274 1.20290 0.92840 0.98980 1.01546 1.20125 0.84232 1.02210 1.05651 1.98248 1.17849 1.98511 1.92114 1.20110 0.93672 1.02095 1.03031 1.17835 0.91734 0.93487 0.93416 1.44130 1.11287 1.32776 1.48749 1.20056 0.91415 0.88595 0.94635 1.18935 1.03573 0.96997 0.89595 1.21400 0.95335 0.91110 1.01282 1.21469 0.97827 1.01548 0.91899 1.20737 0.98610 0.92170 0.97095 1.20304 1.03140 0.98314 0.90030 1.70614 1.23228 1.06376 1.24193 1.29383 0.89085 0.95991 0.84818 1.84603 1.64539 1.37367 1.25459 1.20446 1.02528 0.86281 0.95744 0.91390 0.87164 0.85704 0.85577 0.77391 0.92803 0.89950 0.81765 0.80531 0.82784 0.68539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -46.60 13.66 21.83 0.30 -46.30 16 2 C 0.01 0.60 5.42 85.24 0.46 1.07 16 3 Si 1.10 48.82 24.90 68.60 1.71 50.53 16 4 H -0.26 -10.57 6.44 99.48 0.64 -9.93 16 5 H -0.26 -11.71 7.02 99.48 0.70 -11.01 16 6 H -0.29 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.53 -27.94 8.81 23.36 0.21 -27.74 16 8 H 0.05 2.83 6.99 -2.91 -0.02 2.81 16 9 C 0.03 1.58 5.15 -21.16 -0.11 1.48 16 10 C -0.22 -10.12 7.21 22.46 0.16 -9.96 16 11 C -0.12 -4.76 9.74 22.04 0.21 -4.54 16 12 C -0.09 -3.69 6.33 22.49 0.14 -3.54 16 13 Cl -0.10 -3.12 28.94 -2.72 -0.08 -3.20 16 14 C -0.16 -6.46 9.07 22.39 0.20 -6.26 16 15 C 0.14 5.96 6.68 38.98 0.26 6.22 16 16 N -0.74 -28.33 5.62 -341.79 -1.92 -30.25 16 17 C 0.18 5.30 5.04 85.63 0.43 5.73 16 18 C -0.09 -2.45 5.25 -19.84 -0.10 -2.56 16 19 C -0.07 -1.51 9.65 22.31 0.22 -1.30 16 20 C -0.11 -1.90 10.02 22.25 0.22 -1.68 16 21 C -0.07 -1.46 10.10 22.46 0.23 -1.23 16 22 C -0.01 -0.21 7.24 39.32 0.28 0.08 16 23 N -0.52 -14.15 11.34 -308.41 -3.50 -17.65 16 24 C 0.24 5.44 13.12 130.53 1.71 7.16 16 25 O -0.23 -6.85 10.77 -9.98 -0.11 -6.96 16 26 C 0.00 0.02 7.13 22.88 0.16 0.18 16 27 H 0.28 14.96 8.73 -92.71 -0.81 14.15 16 28 H 0.11 5.05 4.41 -2.91 -0.01 5.04 16 29 H 0.13 4.48 8.06 -2.91 -0.02 4.46 16 30 H 0.13 4.35 6.73 -2.91 -0.02 4.33 16 31 H 0.39 16.34 6.76 -92.71 -0.63 15.72 16 32 H 0.05 1.68 7.94 -2.39 -0.02 1.66 16 33 H 0.08 2.16 7.80 -2.39 -0.02 2.14 16 34 H 0.16 2.59 8.03 -2.91 -0.02 2.57 16 35 H 0.18 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.15 2.61 8.06 -2.91 -0.02 2.59 16 37 H 0.30 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -64.67 331.37 1.50 -63.18 By element: Atomic # 1 Polarization: 27.16 SS G_CDS: 0.40 Total: 27.56 kcal Atomic # 6 Polarization: -41.59 SS G_CDS: 4.69 Total: -36.90 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -5.12 Total: -94.21 kcal Atomic # 8 Polarization: -6.85 SS G_CDS: -0.11 Total: -6.96 kcal Atomic # 14 Polarization: 48.82 SS G_CDS: 1.71 Total: 50.53 kcal Atomic # 17 Polarization: -3.12 SS G_CDS: -0.08 Total: -3.20 kcal Total: -64.67 1.50 -63.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171457990.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.872 kcal (2) G-P(sol) polarization free energy of solvation -64.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.176 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds