Wall clock time and date at job start Tue Mar 31 2020 15:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46916 * 2 1 4 4 C 1.53007 * 109.46682 * 240.00510 * 2 1 3 5 5 C 1.53000 * 109.46487 * 176.80166 * 4 2 1 6 6 C 1.50702 * 109.46748 * 185.00434 * 5 4 2 7 7 H 1.07996 * 120.00220 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99856 * 180.02562 * 6 5 4 9 9 N 1.31503 * 120.00147 * 359.97438 * 8 6 5 10 10 Si 1.86809 * 119.99711 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47023 * 90.00239 * 10 8 6 12 12 H 1.48499 * 109.46684 * 209.99754 * 10 8 6 13 13 H 1.48494 * 109.47040 * 329.99780 * 10 8 6 14 14 N 1.46897 * 109.47338 * 120.00854 * 2 1 3 15 15 C 1.46956 * 111.00037 * 56.47881 * 14 2 1 16 16 C 1.53486 * 109.72166 * 164.87666 * 15 14 2 17 17 N 1.46273 * 108.14374 * 49.67515 * 16 15 14 18 18 C 1.34959 * 129.95574 * 163.69524 * 17 16 15 19 19 Br 1.89100 * 126.54159 * 0.23200 * 18 17 16 20 20 N 1.31035 * 106.91681 * 180.25531 * 18 17 16 21 21 N 1.28962 * 109.92059 * 359.92013 * 20 18 17 22 22 C 1.29559 * 109.65081 * 359.95388 * 21 20 18 23 23 C 1.47429 * 110.95527 * 292.19231 * 14 2 1 24 24 H 1.09001 * 109.47104 * 299.99087 * 1 2 3 25 25 H 1.08995 * 109.47210 * 59.99453 * 1 2 3 26 26 H 1.09008 * 109.46885 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47446 * 296.79829 * 4 2 1 28 28 H 1.08996 * 109.47158 * 56.80269 * 4 2 1 29 29 H 1.08993 * 109.47362 * 304.99908 * 5 4 2 30 30 H 1.09000 * 109.47584 * 65.00937 * 5 4 2 31 31 H 0.97004 * 120.00315 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.42171 * 44.81580 * 15 14 2 33 33 H 1.08995 * 109.42691 * 284.93599 * 15 14 2 34 34 H 1.08994 * 109.72477 * 169.34247 * 16 15 14 35 35 H 1.09007 * 109.72457 * 290.01561 * 16 15 14 36 36 H 1.08997 * 109.81055 * 54.76164 * 23 14 2 37 37 H 1.08998 * 109.75214 * 293.97169 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5678 -0.6518 -1.2902 6 6 4.0636 -1.2533 -2.5800 7 1 3.3594 -1.6462 -3.2985 8 6 5.4163 -1.3031 -2.8423 9 7 6.2738 -0.8252 -1.9673 10 14 6.0309 -2.0493 -4.4408 11 1 6.1208 -0.9911 -5.4788 12 1 7.3735 -2.6459 -4.2245 13 1 5.0870 -3.1041 -4.8897 14 7 2.0197 -0.6926 1.1993 15 6 1.4810 -2.0577 1.2759 16 6 2.2818 -2.8738 2.2999 17 7 2.3715 -2.0939 3.5341 18 6 2.7039 -2.4828 4.7830 19 35 3.1792 -4.2297 5.3291 20 7 2.6341 -1.4191 5.5449 21 7 2.2804 -0.3974 4.8418 22 6 2.1098 -0.7554 3.6084 23 6 1.7052 0.0759 2.4174 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.7242 -1.7640 -1.2213 28 1 1.6305 -0.2414 -2.1383 29 1 3.8861 0.3888 -1.2288 30 1 3.9795 -1.2081 -0.4481 31 1 7.2255 -0.8599 -2.1520 32 1 1.5546 -2.5319 0.2973 33 1 0.4356 -2.0183 1.5818 34 1 1.7731 -3.8174 2.4971 35 1 3.2825 -3.0682 1.9139 36 1 0.6357 0.2821 2.4583 37 1 2.2621 1.0129 2.4158 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:25 Heat of formation + Delta-G solvation = 87.311916 kcal Electronic energy + Delta-G solvation = -20508.923455 eV Core-core repulsion = 17369.048412 eV Total energy + Delta-G solvation = -3139.875043 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.32726 -39.04039 -35.48588 -33.73457 -32.72901 -31.61632 -30.72833 -29.71193 -28.72766 -25.90750 -24.85624 -24.12417 -22.22034 -21.47381 -20.27864 -19.06918 -17.31382 -16.78177 -16.23048 -16.11806 -15.30655 -14.82367 -14.57741 -14.51994 -14.31929 -13.26693 -13.02320 -12.84557 -12.54933 -12.34078 -12.06868 -11.88727 -11.54421 -11.49545 -11.39924 -11.22662 -11.13683 -10.91495 -10.54161 -10.53404 -10.40168 -10.19889 -9.79749 -9.39317 -9.17950 -9.03733 -8.38348 -8.22699 -5.99334 -4.02179 0.60343 1.49104 2.45413 2.61955 3.29559 3.36763 3.38438 3.54598 4.11737 4.31702 4.44223 4.70777 4.86685 4.95284 5.07096 5.17646 5.26779 5.36148 5.37890 5.42522 5.49984 5.59820 5.65875 5.82825 5.91998 6.01837 6.09924 6.38825 6.51103 6.58039 6.94811 7.02941 7.15199 7.72086 7.89543 8.05830 8.42801 8.44227 9.06627 9.61836 11.11239 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.003781 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.746723 B = 7403.800557 C = 8647.303419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.084 3.916 3 H 0.089 0.911 4 C -0.104 4.104 5 C 0.031 3.969 6 C -0.524 4.524 7 H 0.051 0.949 8 C 0.059 3.941 9 N -0.892 5.892 10 Si 0.886 3.114 11 H -0.281 1.281 12 H -0.287 1.287 13 H -0.275 1.275 14 N -0.520 5.520 15 C 0.036 3.964 16 C 0.103 3.897 17 N -0.449 5.449 18 C 0.162 3.838 19 Br 0.079 6.921 20 N -0.259 5.259 21 N -0.284 5.284 22 C 0.211 3.789 23 C 0.135 3.865 24 H 0.050 0.950 25 H 0.066 0.934 26 H 0.055 0.945 27 H 0.048 0.952 28 H 0.057 0.943 29 H 0.012 0.988 30 H 0.027 0.973 31 H 0.259 0.741 32 H 0.118 0.882 33 H 0.046 0.954 34 H 0.099 0.901 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.737 -6.084 11.892 17.782 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.024 4.024 3 H 0.107 0.893 4 C -0.141 4.141 5 C -0.006 4.006 6 C -0.563 4.563 7 H 0.070 0.930 8 C -0.142 4.142 9 N -0.531 5.531 10 Si 0.714 3.286 11 H -0.207 1.207 12 H -0.213 1.213 13 H -0.200 1.200 14 N -0.245 5.245 15 C -0.092 4.092 16 C -0.019 4.019 17 N -0.141 5.141 18 C -0.183 4.183 19 Br 0.159 6.841 20 N -0.102 5.102 21 N -0.125 5.125 22 C -0.058 4.058 23 C 0.005 3.995 24 H 0.069 0.931 25 H 0.085 0.915 26 H 0.074 0.926 27 H 0.067 0.933 28 H 0.075 0.925 29 H 0.031 0.969 30 H 0.045 0.955 31 H 0.069 0.931 32 H 0.136 0.864 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.793 -5.899 13.285 18.105 hybrid contribution -0.424 -0.912 -2.031 2.266 sum -11.217 -6.812 11.254 17.288 Atomic orbital electron populations 1.22546 0.98158 1.01917 1.02069 1.21958 0.91479 0.99108 0.89809 0.89306 1.21792 1.01124 0.98057 0.93160 1.18986 0.87651 0.97252 0.96743 1.21303 0.91651 1.39462 1.03862 0.93043 1.24990 0.97134 0.95625 0.96477 1.69966 1.01996 1.46253 1.34882 0.86696 0.78196 0.79450 0.84224 1.20736 1.21305 1.20001 1.62304 1.59336 1.01326 1.01525 1.22543 0.95491 0.90765 1.00438 1.22435 1.04711 0.94395 0.80396 1.46325 1.49239 1.09925 1.08636 1.26136 1.10135 0.97551 0.84463 1.96846 1.91308 1.06033 1.89936 1.74723 1.16333 0.93914 1.25261 1.73982 1.17628 1.20462 1.00447 1.24945 1.01758 0.82342 0.96770 1.20809 1.00324 0.95490 0.82836 0.93083 0.91518 0.92609 0.93332 0.92473 0.96927 0.95484 0.93084 0.86399 0.93579 0.88239 0.87185 0.91014 0.86487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.03 8.53 37.16 0.32 -1.71 16 2 C 0.08 1.16 2.34 -67.71 -0.16 1.00 16 3 H 0.09 1.28 8.10 -51.93 -0.42 0.86 16 4 C -0.10 -1.82 4.50 -26.73 -0.12 -1.94 16 5 C 0.03 0.73 4.78 -27.88 -0.13 0.60 16 6 C -0.52 -14.08 9.11 -34.44 -0.31 -14.39 16 7 H 0.05 1.34 7.74 -52.49 -0.41 0.93 16 8 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 9 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 10 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 N -0.52 -7.23 4.09 -227.23 -0.93 -8.16 16 15 C 0.04 0.42 4.41 -3.54 -0.02 0.41 16 16 C 0.10 1.20 7.19 -3.91 -0.03 1.17 16 17 N -0.45 -6.32 3.15 -113.20 -0.36 -6.68 16 18 C 0.16 2.37 8.61 -90.00 -0.77 1.60 16 19 Br 0.08 0.88 34.01 -68.01 -2.31 -1.44 16 20 N -0.26 -4.41 12.23 30.96 0.38 -4.04 16 21 N -0.28 -4.85 12.18 32.87 0.40 -4.45 16 22 C 0.21 3.17 7.89 -154.73 -1.22 1.95 16 23 C 0.14 1.72 5.72 -4.65 -0.03 1.70 16 24 H 0.05 0.49 6.51 -51.93 -0.34 0.15 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.57 6.70 -51.92 -0.35 0.23 16 27 H 0.05 0.81 6.07 -51.93 -0.32 0.49 16 28 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.03 0.69 7.85 -51.93 -0.41 0.28 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 32 H 0.12 1.42 5.76 -51.93 -0.30 1.12 16 33 H 0.05 0.48 7.10 -51.93 -0.37 0.11 16 34 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 35 H 0.11 1.42 8.14 -51.92 -0.42 0.99 16 36 H 0.07 0.77 6.36 -51.93 -0.33 0.44 16 37 H 0.12 1.47 8.14 -51.93 -0.42 1.04 16 LS Contribution 317.69 15.07 4.79 4.79 Total: -1.00 -31.55 317.69 -9.79 -41.35 By element: Atomic # 1 Polarization: 1.10 SS G_CDS: -4.91 Total: -3.80 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -2.57 Total: -8.07 kcal Atomic # 7 Polarization: -49.11 SS G_CDS: 0.23 Total: -48.88 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 35 Polarization: 0.88 SS G_CDS: -2.31 Total: -1.44 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.55 -9.79 -41.35 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.658 kcal (2) G-P(sol) polarization free energy of solvation -31.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.346 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds