Wall clock time and date at job start Tue Mar 31 2020 15:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46916 * 2 1 4 4 C 1.53007 * 109.46682 * 240.00510 * 2 1 3 5 5 C 1.53000 * 109.46487 * 176.80166 * 4 2 1 6 6 C 1.50702 * 109.46748 * 185.00434 * 5 4 2 7 7 H 1.07996 * 120.00220 * 359.97438 * 6 5 4 8 8 C 1.37881 * 119.99856 * 180.02562 * 6 5 4 9 9 N 1.31503 * 120.00147 * 359.97438 * 8 6 5 10 10 Si 1.86809 * 119.99711 * 179.97438 * 8 6 5 11 11 H 1.48501 * 109.47023 * 90.00239 * 10 8 6 12 12 H 1.48499 * 109.46684 * 209.99754 * 10 8 6 13 13 H 1.48494 * 109.47040 * 329.99780 * 10 8 6 14 14 N 1.46897 * 109.47338 * 120.00854 * 2 1 3 15 15 C 1.46956 * 111.00037 * 56.47881 * 14 2 1 16 16 C 1.53486 * 109.72166 * 164.87666 * 15 14 2 17 17 N 1.46273 * 108.14374 * 49.67515 * 16 15 14 18 18 C 1.34959 * 129.95574 * 163.69524 * 17 16 15 19 19 Br 1.89100 * 126.54159 * 0.23200 * 18 17 16 20 20 N 1.31035 * 106.91681 * 180.25531 * 18 17 16 21 21 N 1.28962 * 109.92059 * 359.92013 * 20 18 17 22 22 C 1.29559 * 109.65081 * 359.95388 * 21 20 18 23 23 C 1.47429 * 110.95527 * 292.19231 * 14 2 1 24 24 H 1.09001 * 109.47104 * 299.99087 * 1 2 3 25 25 H 1.08995 * 109.47210 * 59.99453 * 1 2 3 26 26 H 1.09008 * 109.46885 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47446 * 296.79829 * 4 2 1 28 28 H 1.08996 * 109.47158 * 56.80269 * 4 2 1 29 29 H 1.08993 * 109.47362 * 304.99908 * 5 4 2 30 30 H 1.09000 * 109.47584 * 65.00937 * 5 4 2 31 31 H 0.97004 * 120.00315 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.42171 * 44.81580 * 15 14 2 33 33 H 1.08995 * 109.42691 * 284.93599 * 15 14 2 34 34 H 1.08994 * 109.72477 * 169.34247 * 16 15 14 35 35 H 1.09007 * 109.72457 * 290.01561 * 16 15 14 36 36 H 1.08997 * 109.81055 * 54.76164 * 23 14 2 37 37 H 1.08998 * 109.75214 * 293.97169 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 3.5678 -0.6518 -1.2902 6 6 4.0636 -1.2533 -2.5800 7 1 3.3594 -1.6462 -3.2985 8 6 5.4163 -1.3031 -2.8423 9 7 6.2738 -0.8252 -1.9673 10 14 6.0309 -2.0493 -4.4408 11 1 6.1208 -0.9911 -5.4788 12 1 7.3735 -2.6459 -4.2245 13 1 5.0870 -3.1041 -4.8897 14 7 2.0197 -0.6926 1.1993 15 6 1.4810 -2.0577 1.2759 16 6 2.2818 -2.8738 2.2999 17 7 2.3715 -2.0939 3.5341 18 6 2.7039 -2.4828 4.7830 19 35 3.1792 -4.2297 5.3291 20 7 2.6341 -1.4191 5.5449 21 7 2.2804 -0.3974 4.8418 22 6 2.1098 -0.7554 3.6084 23 6 1.7052 0.0759 2.4174 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0278 -0.0005 27 1 1.7242 -1.7640 -1.2213 28 1 1.6305 -0.2414 -2.1383 29 1 3.8861 0.3888 -1.2288 30 1 3.9795 -1.2081 -0.4481 31 1 7.2255 -0.8599 -2.1520 32 1 1.5546 -2.5319 0.2973 33 1 0.4356 -2.0183 1.5818 34 1 1.7731 -3.8174 2.4971 35 1 3.2825 -3.0682 1.9139 36 1 0.6357 0.2821 2.4583 37 1 2.2621 1.0129 2.4158 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507804.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:24 Heat of formation + Delta-G solvation = 68.296671 kcal Electronic energy + Delta-G solvation = -20509.748018 eV Core-core repulsion = 17369.048412 eV Total energy + Delta-G solvation = -3140.699606 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.45444 -40.11778 -36.66287 -35.37387 -34.15333 -32.88041 -31.82243 -31.08086 -29.88597 -27.23714 -26.31449 -25.19116 -23.37229 -23.08454 -21.54226 -20.16188 -18.42980 -18.31327 -17.81346 -17.21503 -16.53064 -16.36451 -15.89514 -15.56421 -15.32972 -14.57354 -14.30672 -14.20112 -13.95217 -13.40318 -13.32490 -13.11880 -13.00300 -12.83907 -12.65205 -12.47579 -12.34281 -12.23418 -12.17222 -11.88443 -11.56929 -11.39972 -11.26086 -11.18652 -10.92126 -10.46956 -10.31739 -9.27304 -8.11967 -6.21878 -0.45302 0.38504 1.41535 1.42278 1.42585 1.44524 1.52950 2.44900 2.51128 3.10738 3.21789 3.35639 3.67744 3.93636 3.96572 4.07005 4.19732 4.30384 4.35031 4.43591 4.50038 4.61471 4.67431 4.77208 4.83879 4.95470 5.04318 5.14978 5.32021 5.45198 5.46876 5.62443 5.87870 5.94917 6.03413 6.09340 6.36175 6.99904 7.27815 7.47230 8.98762 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.014219 B = 0.003781 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.746723 B = 7403.800557 C = 8647.303419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.092 3.908 3 H 0.078 0.922 4 C -0.092 4.092 5 C 0.039 3.961 6 C -0.538 4.538 7 H 0.059 0.941 8 C 0.001 3.999 9 N -0.933 5.933 10 Si 0.954 3.046 11 H -0.276 1.276 12 H -0.288 1.288 13 H -0.261 1.261 14 N -0.547 5.547 15 C 0.038 3.962 16 C 0.101 3.899 17 N -0.450 5.450 18 C 0.159 3.841 19 Br 0.112 6.888 20 N -0.292 5.292 21 N -0.314 5.314 22 C 0.207 3.793 23 C 0.142 3.858 24 H 0.067 0.933 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.058 0.942 29 H -0.022 1.022 30 H 0.002 0.998 31 H 0.259 0.741 32 H 0.116 0.884 33 H 0.070 0.930 34 H 0.132 0.868 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.545 -7.346 11.039 18.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.015 4.015 3 H 0.096 0.904 4 C -0.129 4.129 5 C 0.002 3.998 6 C -0.576 4.576 7 H 0.077 0.923 8 C -0.196 4.196 9 N -0.574 5.574 10 Si 0.779 3.221 11 H -0.202 1.202 12 H -0.214 1.214 13 H -0.185 1.185 14 N -0.272 5.272 15 C -0.090 4.090 16 C -0.021 4.021 17 N -0.142 5.142 18 C -0.186 4.186 19 Br 0.191 6.809 20 N -0.135 5.135 21 N -0.155 5.155 22 C -0.062 4.062 23 C 0.012 3.988 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.080 0.920 28 H 0.077 0.923 29 H -0.004 1.004 30 H 0.020 0.980 31 H 0.067 0.933 32 H 0.134 0.866 33 H 0.088 0.912 34 H 0.150 0.850 35 H 0.112 0.888 36 H 0.117 0.883 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -12.625 -7.163 12.422 19.105 hybrid contribution 0.186 -0.571 -1.746 1.846 sum -12.438 -7.734 10.676 18.125 Atomic orbital electron populations 1.22422 0.94961 1.03000 1.03211 1.21721 0.93808 0.97806 0.88191 0.90429 1.21585 0.96398 0.99578 0.95377 1.18816 0.92110 0.94235 0.94628 1.21830 0.92007 1.38772 1.04962 0.92281 1.25877 0.97608 0.96207 0.99909 1.70116 1.02188 1.48007 1.37118 0.85623 0.77592 0.78903 0.79976 1.20217 1.21409 1.18482 1.62185 1.60744 1.02499 1.01800 1.22572 0.96618 0.89455 1.00313 1.22624 1.04359 0.95540 0.79546 1.46493 1.48799 1.09842 1.09026 1.26594 1.08986 0.98529 0.84526 1.96868 1.91051 1.03213 1.89807 1.74627 1.17833 0.94727 1.26363 1.73888 1.18877 1.21171 1.01514 1.25317 1.01185 0.82990 0.96755 1.20848 1.01755 0.94679 0.81514 0.91399 0.90957 0.91506 0.92016 0.92323 1.00367 0.98005 0.93250 0.86594 0.91167 0.84989 0.88818 0.88321 0.86891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.24 8.53 71.98 0.61 -2.62 16 2 C 0.09 2.42 2.34 44.92 0.11 2.53 16 3 H 0.08 2.20 8.10 -2.39 -0.02 2.19 16 4 C -0.09 -3.12 4.50 30.60 0.14 -2.99 16 5 C 0.04 1.90 4.78 29.85 0.14 2.05 16 6 C -0.54 -28.92 9.11 25.60 0.23 -28.69 16 7 H 0.06 3.02 7.74 -2.91 -0.02 2.99 16 8 C 0.00 0.08 5.46 84.66 0.46 0.54 16 9 N -0.93 -56.29 13.29 21.45 0.28 -56.01 16 10 Si 0.95 43.16 29.54 68.60 2.03 45.18 16 11 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 12 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 13 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 14 N -0.55 -14.57 4.09 -872.81 -3.57 -18.14 16 15 C 0.04 0.82 4.41 86.46 0.38 1.20 16 16 C 0.10 2.19 7.19 86.59 0.62 2.82 16 17 N -0.45 -12.22 3.15 -512.07 -1.61 -13.84 16 18 C 0.16 4.56 8.61 180.13 1.55 6.11 16 19 Br 0.11 2.32 34.01 -20.37 -0.69 1.63 16 20 N -0.29 -9.99 12.23 -55.96 -0.68 -10.68 16 21 N -0.31 -10.75 12.18 -49.92 -0.61 -11.36 16 22 C 0.21 6.10 7.89 137.92 1.09 7.19 16 23 C 0.14 3.44 5.72 85.48 0.49 3.93 16 24 H 0.07 1.04 6.51 -2.39 -0.02 1.03 16 25 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.10 6.70 -2.38 -0.02 1.08 16 27 H 0.06 1.94 6.07 -2.39 -0.01 1.92 16 28 H 0.06 1.97 8.14 -2.39 -0.02 1.96 16 29 H -0.02 -1.21 8.14 -2.39 -0.02 -1.23 16 30 H 0.00 0.08 7.85 -2.39 -0.02 0.06 16 31 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 32 H 0.12 2.53 5.76 -2.39 -0.01 2.51 16 33 H 0.07 1.19 7.10 -2.39 -0.02 1.17 16 34 H 0.13 1.97 8.14 -2.39 -0.02 1.96 16 35 H 0.09 2.37 8.14 -2.38 -0.02 2.35 16 36 H 0.10 1.86 6.36 -2.39 -0.02 1.84 16 37 H 0.11 2.81 8.14 -2.39 -0.02 2.79 16 Total: -1.00 -69.44 317.69 2.05 -67.39 By element: Atomic # 1 Polarization: 2.68 SS G_CDS: 1.08 Total: 3.76 kcal Atomic # 6 Polarization: -13.77 SS G_CDS: 5.83 Total: -7.94 kcal Atomic # 7 Polarization: -103.83 SS G_CDS: -6.19 Total: -110.02 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 35 Polarization: 2.32 SS G_CDS: -0.69 Total: 1.63 kcal Total: -69.44 2.05 -67.39 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507804.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.687 kcal (2) G-P(sol) polarization free energy of solvation -69.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds