Wall clock time and date at job start Tue Mar 31 2020 15:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47508 * 2 1 4 4 C 1.53004 * 109.46845 * 120.00276 * 2 1 3 5 5 C 1.53003 * 109.47209 * 184.99891 * 4 2 1 6 6 C 1.50691 * 109.47249 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00147 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99797 * 180.02562 * 6 5 4 9 9 N 1.31505 * 120.00265 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99700 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46947 * 60.00092 * 10 8 6 12 12 H 1.48505 * 109.47196 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47389 * 299.99924 * 10 8 6 14 14 N 1.46901 * 109.47049 * 239.99580 * 2 1 3 15 15 C 1.46964 * 110.99805 * 70.38194 * 14 2 1 16 16 C 1.53413 * 109.83366 * 164.95877 * 15 14 2 17 17 N 1.46270 * 108.17865 * 49.48566 * 16 15 14 18 18 C 1.34964 * 129.95817 * 163.70802 * 17 16 15 19 19 Br 1.89102 * 126.53914 * 0.42149 * 18 17 16 20 20 N 1.31030 * 106.92166 * 180.45872 * 18 17 16 21 21 N 1.28959 * 109.91710 * 359.91585 * 20 18 17 22 22 C 1.29563 * 109.65521 * 359.94724 * 21 20 18 23 23 C 1.47395 * 111.00661 * 306.05169 * 14 2 1 24 24 H 1.09004 * 109.47298 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47151 * 299.99809 * 1 2 3 26 26 H 1.09004 * 109.46958 * 60.00145 * 1 2 3 27 27 H 1.08998 * 109.46860 * 304.99583 * 4 2 1 28 28 H 1.09003 * 109.47487 * 65.00088 * 4 2 1 29 29 H 1.09001 * 109.47121 * 300.00141 * 5 4 2 30 30 H 1.09003 * 109.46735 * 59.99736 * 5 4 2 31 31 H 0.97007 * 120.00116 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.41953 * 284.98256 * 15 14 2 33 33 H 1.09000 * 109.41911 * 44.85908 * 15 14 2 34 34 H 1.09005 * 109.67945 * 289.83249 * 16 15 14 35 35 H 1.08999 * 109.74036 * 169.18543 * 16 15 14 36 36 H 1.09000 * 109.75791 * 54.69649 * 23 14 2 37 37 H 1.09005 * 109.79781 * 293.96882 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3138 6 6 4.0670 -1.3233 2.5445 7 1 3.3685 -1.8038 3.2136 8 6 5.4182 -1.3594 2.8164 9 7 6.2688 -0.7748 2.0014 10 14 6.0407 -2.2389 4.3424 11 1 5.6481 -3.6699 4.2837 12 1 7.5207 -2.1342 4.4050 13 1 5.4481 -1.6121 5.5513 14 7 2.0196 -0.6926 -1.1994 15 6 1.7608 0.1015 -2.4086 16 6 2.5936 -0.4424 -3.5766 17 7 2.3973 -1.8904 -3.6416 18 6 2.6666 -2.7576 -4.6401 19 35 3.4216 -2.3385 -6.3224 20 7 2.3045 -3.9454 -4.2216 21 7 1.8299 -3.8638 -3.0253 22 6 1.8665 -2.6322 -2.6250 23 6 1.4323 -2.0401 -1.3082 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -0.2618 2.1369 28 1 1.7516 -1.7716 1.2056 29 1 3.9994 -1.0729 0.4260 30 1 3.8531 0.4368 1.3574 31 1 7.2195 -0.8005 2.1925 32 1 0.7023 0.0421 -2.6616 33 1 2.0316 1.1412 -2.2242 34 1 3.6479 -0.2211 -3.4102 35 1 2.2636 0.0160 -4.5089 36 1 0.3449 -1.9718 -1.2755 37 1 1.7870 -2.6648 -0.4884 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172507805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:27 Heat of formation + Delta-G solvation = 88.127172 kcal Electronic energy + Delta-G solvation = -20517.896383 eV Core-core repulsion = 17378.056692 eV Total energy + Delta-G solvation = -3139.839691 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.30385 -39.00448 -35.62119 -33.56560 -32.69547 -31.52600 -30.97135 -29.51557 -28.71412 -25.97098 -25.23860 -23.66116 -22.20139 -21.44969 -20.27181 -19.06991 -17.51314 -16.93734 -16.21066 -15.83454 -15.33441 -14.79035 -14.56563 -14.47478 -14.16133 -13.25445 -13.13494 -12.82101 -12.70297 -12.24674 -12.02145 -11.87528 -11.53164 -11.49181 -11.39731 -11.23153 -11.18270 -10.85955 -10.51400 -10.49383 -10.33595 -10.21056 -9.76596 -9.36889 -9.12976 -9.00327 -8.34461 -8.20047 -5.94742 -3.96514 0.59338 1.51013 2.44258 2.67087 3.36075 3.40801 3.43078 3.54171 4.14160 4.24750 4.49615 4.64972 4.77857 4.94965 5.10295 5.14438 5.28610 5.29496 5.41465 5.43964 5.47812 5.52528 5.71008 5.83269 5.92914 6.05213 6.12791 6.41085 6.54041 6.61987 6.96017 7.04829 7.18424 7.75429 7.94871 8.10777 8.48426 8.48557 9.11561 9.67179 11.16207 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.003581 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.289974 B = 7816.420496 C = 8681.424774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.086 3.914 3 H 0.087 0.913 4 C -0.105 4.105 5 C 0.030 3.970 6 C -0.522 4.522 7 H 0.051 0.949 8 C 0.059 3.941 9 N -0.894 5.894 10 Si 0.887 3.113 11 H -0.277 1.277 12 H -0.288 1.288 13 H -0.278 1.278 14 N -0.521 5.521 15 C 0.039 3.961 16 C 0.105 3.895 17 N -0.453 5.453 18 C 0.160 3.840 19 Br 0.077 6.923 20 N -0.256 5.256 21 N -0.281 5.281 22 C 0.216 3.784 23 C 0.133 3.867 24 H 0.059 0.941 25 H 0.066 0.934 26 H 0.048 0.952 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.029 0.971 30 H 0.010 0.990 31 H 0.259 0.741 32 H 0.047 0.953 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.099 0.901 36 H 0.075 0.925 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.522 3.993 -17.235 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.021 4.021 3 H 0.105 0.895 4 C -0.143 4.143 5 C -0.007 4.007 6 C -0.561 4.561 7 H 0.070 0.930 8 C -0.142 4.142 9 N -0.534 5.534 10 Si 0.715 3.285 11 H -0.203 1.203 12 H -0.214 1.214 13 H -0.203 1.203 14 N -0.246 5.246 15 C -0.090 4.090 16 C -0.018 4.018 17 N -0.145 5.145 18 C -0.185 4.185 19 Br 0.157 6.843 20 N -0.100 5.100 21 N -0.122 5.122 22 C -0.053 4.053 23 C 0.004 3.996 24 H 0.078 0.922 25 H 0.085 0.915 26 H 0.067 0.933 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.047 0.953 30 H 0.028 0.972 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.125 0.875 34 H 0.124 0.876 35 H 0.117 0.883 36 H 0.093 0.907 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -9.773 2.679 -17.830 20.508 hybrid contribution -0.157 0.928 0.978 1.357 sum -9.930 3.607 -16.852 19.890 Atomic orbital electron populations 1.22557 0.98184 1.02121 1.01972 1.21970 0.91495 0.98720 0.89957 0.89457 1.21772 1.01040 0.98507 0.92985 1.18996 0.87832 0.96783 0.97098 1.21265 0.91909 1.34424 1.08478 0.93033 1.24976 0.97118 0.95621 0.96506 1.69951 1.02292 1.44187 1.36952 0.86744 0.77638 0.80383 0.83731 1.20268 1.21375 1.20347 1.62261 1.58823 1.01286 1.02211 1.22444 0.97519 0.99343 0.89717 1.22347 1.04005 0.74959 1.00497 1.46272 1.46118 1.10298 1.11854 1.26106 1.09497 0.89466 0.93398 1.96828 1.81084 1.93147 1.13244 1.74734 1.13183 1.17103 1.04972 1.74011 1.18650 1.15148 1.04426 1.25036 0.99094 0.88344 0.92827 1.20901 0.98025 0.90805 0.89909 0.92177 0.91464 0.93339 0.92620 0.93077 0.95269 0.97171 0.93115 0.93532 0.87536 0.87572 0.88288 0.90706 0.85598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.06 8.48 37.16 0.32 -1.74 16 2 C 0.09 1.19 2.30 -67.71 -0.16 1.04 16 3 H 0.09 1.21 7.86 -51.93 -0.41 0.80 16 4 C -0.11 -1.92 4.54 -26.73 -0.12 -2.05 16 5 C 0.03 0.73 4.86 -27.89 -0.14 0.60 16 6 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 7 H 0.05 1.39 7.74 -52.49 -0.41 0.98 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -26.82 13.29 55.43 0.74 -26.08 16 10 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 N -0.52 -7.25 4.05 -227.30 -0.92 -8.17 16 15 C 0.04 0.40 5.00 -3.58 -0.02 0.38 16 16 C 0.10 1.09 7.19 -3.95 -0.03 1.06 16 17 N -0.45 -6.33 3.15 -113.25 -0.36 -6.69 16 18 C 0.16 2.35 8.61 -90.00 -0.77 1.58 16 19 Br 0.08 0.83 34.01 -68.01 -2.31 -1.48 16 20 N -0.26 -4.52 12.23 30.96 0.38 -4.14 16 21 N -0.28 -5.10 12.18 32.87 0.40 -4.70 16 22 C 0.22 3.42 7.89 -154.73 -1.22 2.20 16 23 C 0.13 1.88 5.07 -4.67 -0.02 1.86 16 24 H 0.06 0.65 6.21 -51.93 -0.32 0.32 16 25 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 26 H 0.05 0.45 7.05 -51.93 -0.37 0.09 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.05 0.93 6.47 -51.93 -0.34 0.59 16 29 H 0.03 0.78 7.75 -51.93 -0.40 0.37 16 30 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 32 H 0.05 0.43 7.28 -51.93 -0.38 0.05 16 33 H 0.11 0.92 7.82 -51.93 -0.41 0.51 16 34 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 35 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.08 0.90 5.93 -51.93 -0.31 0.59 16 37 H 0.13 2.00 6.69 -51.93 -0.35 1.65 16 LS Contribution 318.11 15.07 4.79 4.79 Total: -1.00 -32.67 318.11 -9.81 -42.48 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -4.93 Total: -4.41 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -2.57 Total: -8.31 kcal Atomic # 7 Polarization: -50.02 SS G_CDS: 0.24 Total: -49.78 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Atomic # 35 Polarization: 0.83 SS G_CDS: -2.31 Total: -1.48 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.67 -9.81 -42.48 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.605 kcal (2) G-P(sol) polarization free energy of solvation -32.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds