Wall clock time and date at job start Tue Mar 31 2020 15:01:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47508 * 2 1 4 4 C 1.53004 * 109.46845 * 120.00276 * 2 1 3 5 5 C 1.53003 * 109.47209 * 184.99891 * 4 2 1 6 6 C 1.50691 * 109.47249 * 179.97438 * 5 4 2 7 7 H 1.07999 * 120.00147 * 0.02562 * 6 5 4 8 8 C 1.37877 * 119.99797 * 180.02562 * 6 5 4 9 9 N 1.31505 * 120.00265 * 359.97438 * 8 6 5 10 10 Si 1.86806 * 119.99700 * 179.97438 * 8 6 5 11 11 H 1.48503 * 109.46947 * 60.00092 * 10 8 6 12 12 H 1.48505 * 109.47196 * 179.97438 * 10 8 6 13 13 H 1.48500 * 109.47389 * 299.99924 * 10 8 6 14 14 N 1.46901 * 109.47049 * 239.99580 * 2 1 3 15 15 C 1.46964 * 110.99805 * 70.38194 * 14 2 1 16 16 C 1.53413 * 109.83366 * 164.95877 * 15 14 2 17 17 N 1.46270 * 108.17865 * 49.48566 * 16 15 14 18 18 C 1.34964 * 129.95817 * 163.70802 * 17 16 15 19 19 Br 1.89102 * 126.53914 * 0.42149 * 18 17 16 20 20 N 1.31030 * 106.92166 * 180.45872 * 18 17 16 21 21 N 1.28959 * 109.91710 * 359.91585 * 20 18 17 22 22 C 1.29563 * 109.65521 * 359.94724 * 21 20 18 23 23 C 1.47395 * 111.00661 * 306.05169 * 14 2 1 24 24 H 1.09004 * 109.47298 * 179.97438 * 1 2 3 25 25 H 1.08992 * 109.47151 * 299.99809 * 1 2 3 26 26 H 1.09004 * 109.46958 * 60.00145 * 1 2 3 27 27 H 1.08998 * 109.46860 * 304.99583 * 4 2 1 28 28 H 1.09003 * 109.47487 * 65.00088 * 4 2 1 29 29 H 1.09001 * 109.47121 * 300.00141 * 5 4 2 30 30 H 1.09003 * 109.46735 * 59.99736 * 5 4 2 31 31 H 0.97007 * 120.00116 * 180.02562 * 9 8 6 32 32 H 1.08998 * 109.41953 * 284.98256 * 15 14 2 33 33 H 1.09000 * 109.41911 * 44.85908 * 15 14 2 34 34 H 1.09005 * 109.67945 * 289.83249 * 16 15 14 35 35 H 1.08999 * 109.74036 * 169.18543 * 16 15 14 36 36 H 1.09000 * 109.75791 * 54.69649 * 23 14 2 37 37 H 1.09005 * 109.79781 * 293.96882 * 23 14 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5648 -0.6135 1.3138 6 6 4.0670 -1.3233 2.5445 7 1 3.3685 -1.8038 3.2136 8 6 5.4182 -1.3594 2.8164 9 7 6.2688 -0.7748 2.0014 10 14 6.0407 -2.2389 4.3424 11 1 5.6481 -3.6699 4.2837 12 1 7.5207 -2.1342 4.4050 13 1 5.4481 -1.6121 5.5513 14 7 2.0196 -0.6926 -1.1994 15 6 1.7608 0.1015 -2.4086 16 6 2.5936 -0.4424 -3.5766 17 7 2.3973 -1.8904 -3.6416 18 6 2.6666 -2.7576 -4.6401 19 35 3.4216 -2.3385 -6.3224 20 7 2.3045 -3.9454 -4.2216 21 7 1.8299 -3.8638 -3.0253 22 6 1.8665 -2.6322 -2.6250 23 6 1.4323 -2.0401 -1.3082 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.6053 -0.2618 2.1369 28 1 1.7516 -1.7716 1.2056 29 1 3.9994 -1.0729 0.4260 30 1 3.8531 0.4368 1.3574 31 1 7.2195 -0.8005 2.1925 32 1 0.7023 0.0421 -2.6616 33 1 2.0316 1.1412 -2.2242 34 1 3.6479 -0.2211 -3.4102 35 1 2.2636 0.0160 -4.5089 36 1 0.3449 -1.9718 -1.2755 37 1 1.7870 -2.6648 -0.4884 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172507805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:01:26 Heat of formation + Delta-G solvation = 67.785612 kcal Electronic energy + Delta-G solvation = -20518.778459 eV Core-core repulsion = 17378.056692 eV Total energy + Delta-G solvation = -3140.721767 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 328.059 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -44.44782 -40.07476 -36.78505 -35.31388 -34.06173 -32.86998 -32.01736 -30.95816 -29.81458 -27.14892 -26.85729 -24.78638 -23.36634 -23.04648 -21.56095 -20.18470 -18.56071 -18.35369 -17.99273 -16.94655 -16.56479 -16.32159 -15.86839 -15.57736 -15.19905 -14.58478 -14.46284 -14.13650 -13.94088 -13.45075 -13.32615 -13.17595 -12.94513 -12.80620 -12.61941 -12.51671 -12.37977 -12.23889 -12.21419 -11.79455 -11.59745 -11.43247 -11.24840 -11.20448 -10.94335 -10.47069 -10.31243 -9.26909 -8.13748 -6.22636 -0.46786 0.38979 1.40028 1.42488 1.43043 1.46064 1.49560 2.43731 2.51783 3.12811 3.19968 3.35658 3.67395 3.94271 3.98786 4.09054 4.16044 4.31295 4.33915 4.48639 4.52080 4.62183 4.67422 4.77137 4.80684 4.97431 5.00355 5.14990 5.32329 5.44911 5.48654 5.60172 5.88869 5.91148 6.03426 6.10648 6.35880 6.97901 7.29306 7.45692 8.96972 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.015636 B = 0.003581 C = 0.003225 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.289974 B = 7816.420496 C = 8681.424774 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.096 3.904 3 H 0.090 0.910 4 C -0.096 4.096 5 C 0.040 3.960 6 C -0.542 4.542 7 H 0.055 0.945 8 C 0.002 3.998 9 N -0.931 5.931 10 Si 0.952 3.048 11 H -0.272 1.272 12 H -0.286 1.286 13 H -0.265 1.265 14 N -0.548 5.548 15 C 0.040 3.960 16 C 0.098 3.902 17 N -0.450 5.450 18 C 0.159 3.841 19 Br 0.116 6.884 20 N -0.295 5.295 21 N -0.318 5.318 22 C 0.208 3.792 23 C 0.141 3.859 24 H 0.060 0.940 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.059 0.941 28 H 0.048 0.952 29 H -0.001 1.001 30 H -0.014 1.014 31 H 0.260 0.740 32 H 0.068 0.932 33 H 0.127 0.873 34 H 0.100 0.900 35 H 0.136 0.864 36 H 0.100 0.900 37 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.771 5.164 -17.699 21.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.012 4.012 3 H 0.108 0.892 4 C -0.134 4.134 5 C 0.003 3.997 6 C -0.580 4.580 7 H 0.073 0.927 8 C -0.195 4.195 9 N -0.572 5.572 10 Si 0.777 3.223 11 H -0.198 1.198 12 H -0.211 1.211 13 H -0.190 1.190 14 N -0.273 5.273 15 C -0.088 4.088 16 C -0.023 4.023 17 N -0.142 5.142 18 C -0.186 4.186 19 Br 0.195 6.805 20 N -0.138 5.138 21 N -0.159 5.159 22 C -0.062 4.062 23 C 0.011 3.989 24 H 0.079 0.921 25 H 0.092 0.908 26 H 0.091 0.909 27 H 0.078 0.922 28 H 0.067 0.933 29 H 0.017 0.983 30 H 0.004 0.996 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.145 0.855 34 H 0.118 0.882 35 H 0.154 0.846 36 H 0.117 0.883 37 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -11.042 3.862 -18.288 21.709 hybrid contribution 0.300 0.607 1.038 1.239 sum -10.742 4.468 -17.249 20.806 Atomic orbital electron populations 1.22436 0.95137 1.02683 1.03527 1.21740 0.93721 0.97758 0.87938 0.89215 1.21580 0.96575 0.99273 0.95964 1.18810 0.92080 0.94290 0.94546 1.21810 0.92349 1.34278 1.09565 0.92680 1.25853 0.97557 0.96469 0.99650 1.70085 1.02496 1.45733 1.38897 0.85700 0.77027 0.79262 0.80263 1.19765 1.21136 1.18978 1.62124 1.59902 1.01606 1.03695 1.22576 0.98739 0.99624 0.87841 1.22705 1.04025 0.73108 1.02501 1.46494 1.45227 1.11472 1.11047 1.26624 1.08217 0.89025 0.94726 1.96858 1.80418 1.92740 1.10514 1.74618 1.14914 1.18969 1.05324 1.73896 1.20075 1.16756 1.05159 1.25276 0.99084 0.88166 0.93646 1.20805 0.99240 0.90651 0.88203 0.92080 0.90830 0.90870 0.92233 0.93325 0.98275 0.99590 0.93169 0.91416 0.85467 0.88194 0.84616 0.88262 0.88258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.32 8.48 71.98 0.61 -2.71 16 2 C 0.10 2.51 2.30 44.92 0.10 2.61 16 3 H 0.09 2.32 7.86 -2.39 -0.02 2.30 16 4 C -0.10 -3.50 4.54 30.60 0.14 -3.36 16 5 C 0.04 2.00 4.86 29.85 0.15 2.15 16 6 C -0.54 -30.56 9.11 25.60 0.23 -30.33 16 7 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 8 C 0.00 0.13 5.46 84.66 0.46 0.59 16 9 N -0.93 -57.07 13.29 21.45 0.28 -56.78 16 10 Si 0.95 44.88 29.54 68.60 2.03 46.90 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 12 H -0.29 -13.27 7.11 99.48 0.71 -12.56 16 13 H -0.26 -11.86 7.11 99.48 0.71 -11.15 16 14 N -0.55 -14.59 4.05 -873.04 -3.54 -18.13 16 15 C 0.04 0.71 5.00 86.43 0.43 1.14 16 16 C 0.10 1.81 7.19 86.56 0.62 2.43 16 17 N -0.45 -12.13 3.15 -512.21 -1.61 -13.75 16 18 C 0.16 4.59 8.61 180.13 1.55 6.14 16 19 Br 0.12 2.30 34.01 -20.37 -0.69 1.60 16 20 N -0.30 -10.54 12.23 -55.95 -0.68 -11.22 16 21 N -0.32 -11.78 12.18 -49.93 -0.61 -12.39 16 22 C 0.21 6.58 7.89 137.92 1.09 7.67 16 23 C 0.14 3.91 5.07 85.48 0.43 4.35 16 24 H 0.06 1.14 6.21 -2.39 -0.01 1.12 16 25 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.04 7.05 -2.39 -0.02 1.02 16 27 H 0.06 2.09 8.14 -2.39 -0.02 2.08 16 28 H 0.05 1.78 6.47 -2.39 -0.02 1.76 16 29 H 0.00 -0.07 7.75 -2.39 -0.02 -0.09 16 30 H -0.01 -0.78 8.14 -2.39 -0.02 -0.80 16 31 H 0.26 15.11 8.31 -92.70 -0.77 14.34 16 32 H 0.07 0.96 7.28 -2.39 -0.02 0.94 16 33 H 0.13 1.75 7.82 -2.39 -0.02 1.73 16 34 H 0.10 2.01 8.14 -2.38 -0.02 1.99 16 35 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.10 2.22 5.93 -2.39 -0.01 2.20 16 37 H 0.10 3.27 6.69 -2.38 -0.02 3.25 16 Total: -1.00 -73.11 318.11 2.07 -71.04 By element: Atomic # 1 Polarization: 0.96 SS G_CDS: 1.08 Total: 2.04 kcal Atomic # 6 Polarization: -15.14 SS G_CDS: 5.82 Total: -9.32 kcal Atomic # 7 Polarization: -106.10 SS G_CDS: -6.16 Total: -112.26 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.90 kcal Atomic # 35 Polarization: 2.30 SS G_CDS: -0.69 Total: 1.60 kcal Total: -73.11 2.07 -71.04 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172507805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.822 kcal (2) G-P(sol) polarization free energy of solvation -73.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.036 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds