Wall clock time and date at job start Tue Mar 31 2020 15:23:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39982 * 120.15152 * 307.16813 * 3 2 1 5 5 F 1.35095 * 120.03030 * 359.97438 * 4 3 2 6 6 C 1.38167 * 119.93780 * 180.02562 * 4 3 2 7 7 C 1.38284 * 120.26177 * 359.97438 * 6 4 3 8 8 C 1.38850 * 120.31354 * 0.03046 * 7 6 4 9 9 N 1.40100 * 119.97269 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00113 * 28.36633 * 9 8 7 11 11 O 1.21568 * 120.00266 * 355.53908 * 10 9 8 12 12 C 1.47862 * 119.99970 * 175.81684 * 10 9 8 13 13 C 1.39923 * 120.02689 * 359.45274 * 12 10 9 14 14 C 1.38328 * 120.36118 * 179.69622 * 13 12 10 15 15 C 1.37753 * 120.40672 * 0.59823 * 14 13 12 16 16 C 1.40753 * 120.04451 * 359.67894 * 15 14 13 17 17 C 1.41443 * 120.17705 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99829 * 332.02011 * 17 16 15 19 19 C 1.39936 * 119.99658 * 152.02833 * 17 16 15 20 20 N 1.30825 * 120.00245 * 347.82783 * 19 17 16 21 21 Si 1.86804 * 119.99755 * 167.82733 * 19 17 16 22 22 H 1.48503 * 109.47001 * 89.99537 * 21 19 17 23 23 H 1.48492 * 109.47351 * 210.00057 * 21 19 17 24 24 H 1.48504 * 109.46967 * 330.00009 * 21 19 17 25 25 C 1.39006 * 120.02508 * 179.72043 * 12 10 9 26 26 C 1.38843 * 120.05171 * 0.22473 * 8 7 6 27 27 F 1.35098 * 120.12996 * 179.72200 * 26 8 7 28 28 H 1.08001 * 119.86799 * 179.97438 * 6 4 3 29 29 H 1.08002 * 119.84001 * 180.02562 * 7 6 4 30 30 H 0.97002 * 119.99884 * 208.36225 * 9 8 7 31 31 H 1.08007 * 119.82116 * 359.96798 * 13 12 10 32 32 H 1.07996 * 119.79572 * 180.27483 * 14 13 12 33 33 H 1.08008 * 119.97910 * 179.69745 * 15 14 13 34 34 H 0.97001 * 119.99934 * 180.02562 * 20 19 17 35 35 H 1.08004 * 120.20645 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2715 -0.7303 0.9645 5 9 2.6001 -1.4383 1.8989 6 6 4.6531 -0.7262 0.9608 7 6 5.3452 -0.0027 0.0069 8 6 4.6583 0.7262 -0.9547 9 7 5.3667 1.4571 -1.9174 10 6 6.5939 1.0535 -2.3015 11 8 7.1199 0.1032 -1.7555 12 6 7.3030 1.7703 -3.3830 13 6 6.6959 2.8606 -4.0158 14 6 7.3556 3.5401 -5.0240 15 6 8.6125 3.1439 -5.4252 16 6 9.2369 2.0458 -4.8043 17 6 10.5276 1.6370 -5.2136 18 1 10.8554 1.8180 -6.2267 19 6 11.3796 0.9978 -4.3061 20 7 11.0885 0.9885 -3.0307 21 14 12.9328 0.1579 -4.9157 22 1 14.0568 1.1284 -4.9060 23 1 13.2586 -0.9859 -4.0265 24 1 12.7177 -0.3364 -6.2994 25 6 8.5712 1.3581 -3.7756 26 6 3.2699 0.7355 -0.9598 27 9 2.5999 1.4486 -1.8913 28 1 5.1947 -1.2902 1.7057 29 1 6.4253 -0.0046 0.0100 30 1 4.9739 2.2536 -2.3075 31 1 5.7085 3.1761 -3.7124 32 1 6.8802 4.3831 -5.5032 33 1 9.1193 3.6765 -6.2165 34 1 11.6793 0.5458 -2.4015 35 1 9.0421 0.5146 -3.2927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188677558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:47 Heat of formation + Delta-G solvation = -42.755947 kcal Electronic energy + Delta-G solvation = -25711.659424 eV Core-core repulsion = 21503.791389 eV Total energy + Delta-G solvation = -4207.868035 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.41354 -49.36249 -40.52507 -38.73049 -37.31543 -36.68258 -34.74015 -33.82336 -31.64250 -30.78072 -29.64840 -29.06916 -25.49871 -24.82322 -23.74777 -22.40049 -21.14881 -20.29644 -19.34386 -18.46151 -18.28255 -17.39070 -16.97683 -16.55088 -15.96694 -15.89665 -15.68397 -15.34340 -14.87627 -14.86019 -14.48490 -14.29982 -13.86953 -13.65222 -13.52972 -13.39492 -13.28722 -12.89713 -12.70952 -12.59394 -12.35571 -12.04619 -11.80133 -11.29461 -11.19944 -10.91418 -10.63324 -10.53032 -10.19314 -9.87466 -9.48036 -9.38245 -9.27009 -8.34315 -7.83051 -7.66115 -6.89833 -4.57183 0.15088 0.54512 1.87567 2.23282 2.52354 2.66834 2.89808 3.00889 3.01418 3.05992 3.20229 3.33216 3.41782 3.56205 3.82894 3.90315 4.39251 4.48256 4.55685 4.83066 5.25471 5.32246 5.38097 5.41512 5.71631 5.82696 5.91557 6.04460 6.08077 6.51799 6.55162 6.76772 6.82875 7.06208 7.08788 7.18398 7.33448 7.51508 7.63908 7.80342 7.99571 8.33740 8.36796 8.65303 8.68097 10.04449 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.002887 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.545211 B = 9694.650325 C =10928.920516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.257 3.743 3 C -0.078 4.078 4 C 0.147 3.853 5 F -0.123 7.123 6 C -0.136 4.136 7 C -0.051 4.051 8 C 0.130 3.870 9 N -0.671 5.671 10 C 0.572 3.428 11 O -0.519 6.519 12 C -0.134 4.134 13 C -0.214 4.214 14 C -0.097 4.097 15 C -0.203 4.203 16 C 0.097 3.903 17 C -0.457 4.457 18 H 0.082 0.918 19 C 0.072 3.928 20 N -0.790 5.790 21 Si 0.913 3.087 22 H -0.269 1.269 23 H -0.274 1.274 24 H -0.260 1.260 25 C -0.080 4.080 26 C 0.133 3.867 27 F -0.117 7.117 28 H 0.158 0.842 29 H 0.182 0.818 30 H 0.418 0.582 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.099 0.901 34 H 0.285 0.715 35 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.067 -1.010 6.447 10.376 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.069 5.069 2 C -0.059 4.059 3 C -0.084 4.084 4 C 0.124 3.876 5 F -0.101 7.101 6 C -0.155 4.155 7 C -0.072 4.072 8 C 0.032 3.968 9 N -0.316 5.316 10 C 0.365 3.635 11 O -0.396 6.396 12 C -0.138 4.138 13 C -0.235 4.235 14 C -0.115 4.115 15 C -0.223 4.223 16 C 0.095 3.905 17 C -0.486 4.486 18 H 0.100 0.900 19 C -0.147 4.147 20 N -0.415 5.415 21 Si 0.737 3.263 22 H -0.194 1.194 23 H -0.199 1.199 24 H -0.184 1.184 25 C -0.100 4.100 26 C 0.108 3.892 27 F -0.095 7.095 28 H 0.176 0.824 29 H 0.199 0.801 30 H 0.257 0.743 31 H 0.109 0.891 32 H 0.114 0.886 33 H 0.117 0.883 34 H 0.096 0.904 35 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -9.338 -1.736 6.980 11.787 hybrid contribution 0.556 0.172 -0.418 0.716 sum -8.782 -1.564 6.563 11.074 Atomic orbital electron populations 1.81228 1.11446 1.07397 1.06845 1.24910 0.91880 0.94524 0.94609 1.15547 0.85418 1.06652 1.00794 1.17234 0.89772 0.93277 0.87363 1.91560 1.80527 1.75635 1.62386 1.21153 0.90827 1.02150 1.01380 1.21798 1.03658 0.92715 0.89035 1.17722 0.88047 0.98459 0.92602 1.43654 1.18561 1.29323 1.40104 1.19095 0.78948 0.82875 0.82547 1.90642 1.65564 1.28226 1.55173 1.19256 0.96841 0.99279 0.98398 1.20359 0.99489 1.00727 1.02877 1.20459 0.95308 0.98618 0.97125 1.21207 0.96756 0.99269 1.05038 1.17616 0.92771 0.89451 0.90701 1.19604 0.97760 1.32854 0.98426 0.90004 1.25952 1.00149 0.94187 0.94383 1.69732 1.36552 1.32825 1.02399 0.86222 0.80683 0.79330 0.80048 1.19398 1.19920 1.18420 1.21704 0.90628 0.99704 0.97937 1.16925 0.87909 0.95354 0.89000 1.91557 1.80134 1.75286 1.62556 0.82436 0.80111 0.74345 0.89088 0.88568 0.88327 0.90387 0.84389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.65 18.54 41.84 0.78 -4.87 16 2 C 0.26 3.25 14.62 -22.47 -0.33 2.93 16 3 C -0.08 -0.87 5.75 -106.74 -0.61 -1.48 16 4 C 0.15 1.46 7.27 -38.95 -0.28 1.18 16 5 F -0.12 -1.28 16.80 2.25 0.04 -1.24 16 6 C -0.14 -1.23 10.00 -39.59 -0.40 -1.63 16 7 C -0.05 -0.59 8.75 -39.34 -0.34 -0.93 16 8 C 0.13 1.61 6.41 -83.63 -0.54 1.08 16 9 N -0.67 -9.44 5.23 -10.67 -0.06 -9.50 16 10 C 0.57 10.41 7.65 -12.32 -0.09 10.32 16 11 O -0.52 -10.37 13.37 5.31 0.07 -10.30 16 12 C -0.13 -2.78 5.87 -105.04 -0.62 -3.39 16 13 C -0.21 -3.99 9.54 -38.92 -0.37 -4.37 16 14 C -0.10 -1.87 10.01 -39.73 -0.40 -2.27 16 15 C -0.20 -4.41 9.78 -38.81 -0.38 -4.79 16 16 C 0.10 2.36 5.55 -106.87 -0.59 1.76 16 17 C -0.46 -11.16 9.06 -37.73 -0.34 -11.50 16 18 H 0.08 1.90 7.88 -52.48 -0.41 1.49 16 19 C 0.07 1.68 5.23 -17.35 -0.09 1.59 16 20 N -0.79 -19.24 10.86 55.55 0.60 -18.64 16 21 Si 0.91 17.57 29.58 -169.99 -5.03 12.54 16 22 H -0.27 -5.11 7.11 56.52 0.40 -4.70 16 23 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 24 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 25 C -0.08 -1.90 8.21 -38.44 -0.32 -2.22 16 26 C 0.13 1.54 7.28 -38.78 -0.28 1.26 16 27 F -0.12 -1.42 16.39 2.25 0.04 -1.38 16 28 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 29 H 0.18 2.37 5.69 -52.49 -0.30 2.07 16 30 H 0.42 5.12 6.54 -40.82 -0.27 4.86 16 31 H 0.09 1.37 6.39 -52.48 -0.34 1.03 16 32 H 0.10 1.57 8.06 -52.49 -0.42 1.14 16 33 H 0.10 2.00 8.06 -52.48 -0.42 1.57 16 34 H 0.28 6.37 8.30 -40.82 -0.34 6.03 16 35 H 0.14 3.55 5.79 -52.48 -0.30 3.25 16 LS Contribution 327.84 15.07 4.94 4.94 Total: -1.00 -26.32 327.84 -6.62 -32.94 By element: Atomic # 1 Polarization: 9.98 SS G_CDS: -2.02 Total: 7.96 kcal Atomic # 6 Polarization: -6.47 SS G_CDS: -5.98 Total: -12.46 kcal Atomic # 7 Polarization: -34.34 SS G_CDS: 1.32 Total: -33.01 kcal Atomic # 8 Polarization: -10.37 SS G_CDS: 0.07 Total: -10.30 kcal Atomic # 9 Polarization: -2.69 SS G_CDS: 0.07 Total: -2.62 kcal Atomic # 14 Polarization: 17.57 SS G_CDS: -5.03 Total: 12.54 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -26.32 -6.62 -32.94 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188677558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.814 kcal (2) G-P(sol) polarization free energy of solvation -26.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds