Wall clock time and date at job start Tue Mar 31 2020 15:23:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39982 * 120.15152 * 307.16813 * 3 2 1 5 5 F 1.35095 * 120.03030 * 359.97438 * 4 3 2 6 6 C 1.38167 * 119.93780 * 180.02562 * 4 3 2 7 7 C 1.38284 * 120.26177 * 359.97438 * 6 4 3 8 8 C 1.38850 * 120.31354 * 0.03046 * 7 6 4 9 9 N 1.40100 * 119.97269 * 179.97438 * 8 7 6 10 10 C 1.34776 * 120.00113 * 28.36633 * 9 8 7 11 11 O 1.21568 * 120.00266 * 355.53908 * 10 9 8 12 12 C 1.47862 * 119.99970 * 175.81684 * 10 9 8 13 13 C 1.39923 * 120.02689 * 359.45274 * 12 10 9 14 14 C 1.38328 * 120.36118 * 179.69622 * 13 12 10 15 15 C 1.37753 * 120.40672 * 0.59823 * 14 13 12 16 16 C 1.40753 * 120.04451 * 359.67894 * 15 14 13 17 17 C 1.41443 * 120.17705 * 180.02562 * 16 15 14 18 18 H 1.08003 * 119.99829 * 332.02011 * 17 16 15 19 19 C 1.39936 * 119.99658 * 152.02833 * 17 16 15 20 20 N 1.30825 * 120.00245 * 347.82783 * 19 17 16 21 21 Si 1.86804 * 119.99755 * 167.82733 * 19 17 16 22 22 H 1.48503 * 109.47001 * 89.99537 * 21 19 17 23 23 H 1.48492 * 109.47351 * 210.00057 * 21 19 17 24 24 H 1.48504 * 109.46967 * 330.00009 * 21 19 17 25 25 C 1.39006 * 120.02508 * 179.72043 * 12 10 9 26 26 C 1.38843 * 120.05171 * 0.22473 * 8 7 6 27 27 F 1.35098 * 120.12996 * 179.72200 * 26 8 7 28 28 H 1.08001 * 119.86799 * 179.97438 * 6 4 3 29 29 H 1.08002 * 119.84001 * 180.02562 * 7 6 4 30 30 H 0.97002 * 119.99884 * 208.36225 * 9 8 7 31 31 H 1.08007 * 119.82116 * 359.96798 * 13 12 10 32 32 H 1.07996 * 119.79572 * 180.27483 * 14 13 12 33 33 H 1.08008 * 119.97910 * 179.69745 * 15 14 13 34 34 H 0.97001 * 119.99934 * 180.02562 * 20 19 17 35 35 H 1.08004 * 120.20645 * 359.97438 * 25 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5681 0.0006 0.0000 4 6 3.2715 -0.7303 0.9645 5 9 2.6001 -1.4383 1.8989 6 6 4.6531 -0.7262 0.9608 7 6 5.3452 -0.0027 0.0069 8 6 4.6583 0.7262 -0.9547 9 7 5.3667 1.4571 -1.9174 10 6 6.5939 1.0535 -2.3015 11 8 7.1199 0.1032 -1.7555 12 6 7.3030 1.7703 -3.3830 13 6 6.6959 2.8606 -4.0158 14 6 7.3556 3.5401 -5.0240 15 6 8.6125 3.1439 -5.4252 16 6 9.2369 2.0458 -4.8043 17 6 10.5276 1.6370 -5.2136 18 1 10.8554 1.8180 -6.2267 19 6 11.3796 0.9978 -4.3061 20 7 11.0885 0.9885 -3.0307 21 14 12.9328 0.1579 -4.9157 22 1 14.0568 1.1284 -4.9060 23 1 13.2586 -0.9859 -4.0265 24 1 12.7177 -0.3364 -6.2994 25 6 8.5712 1.3581 -3.7756 26 6 3.2699 0.7355 -0.9598 27 9 2.5999 1.4486 -1.8913 28 1 5.1947 -1.2902 1.7057 29 1 6.4253 -0.0046 0.0100 30 1 4.9739 2.2536 -2.3075 31 1 5.7085 3.1761 -3.7124 32 1 6.8802 4.3831 -5.5032 33 1 9.1193 3.6765 -6.2165 34 1 11.6793 0.5458 -2.4015 35 1 9.0421 0.5146 -3.2927 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188677558.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:46 Heat of formation + Delta-G solvation = -55.137505 kcal Electronic energy + Delta-G solvation = -25712.196328 eV Core-core repulsion = 21503.791389 eV Total energy + Delta-G solvation = -4208.404939 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.36373 -50.22528 -41.75293 -39.90650 -38.82649 -37.79099 -35.99993 -35.46632 -32.66198 -32.18511 -31.29511 -30.24984 -27.20200 -25.81488 -25.00814 -23.53019 -22.78015 -21.66988 -20.40024 -19.84380 -19.25958 -18.69022 -18.10804 -17.55688 -17.29109 -16.97496 -16.74416 -16.58992 -16.41544 -16.08720 -15.77457 -15.53117 -15.05505 -14.90000 -14.70868 -14.56643 -14.46491 -14.28686 -14.16838 -13.66878 -13.51593 -13.30534 -12.95102 -12.90602 -12.76654 -12.54215 -12.18436 -11.86984 -11.59959 -11.50532 -11.07910 -10.84462 -10.26638 -9.59894 -9.35197 -9.25044 -8.60301 -6.37206 -0.77173 -0.38985 0.34437 1.02309 1.21808 1.41442 1.47570 1.53829 1.55387 1.75628 1.98378 2.22869 2.33026 2.38325 2.46121 2.80609 2.99000 3.49992 3.64071 3.69676 3.74979 4.08907 4.35483 4.42646 4.49764 4.57620 4.81860 4.89294 4.91246 5.09126 5.11838 5.17901 5.34138 5.50589 5.53444 5.82004 5.90746 6.06085 6.09163 6.22248 6.33107 6.60843 6.91228 6.94072 7.00640 8.35780 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.019748 B = 0.002887 C = 0.002561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1417.545211 B = 9694.650325 C =10928.920516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.425 5.425 2 C 0.271 3.729 3 C -0.079 4.079 4 C 0.162 3.838 5 F -0.121 7.121 6 C -0.114 4.114 7 C -0.051 4.051 8 C 0.113 3.887 9 N -0.656 5.656 10 C 0.574 3.426 11 O -0.544 6.544 12 C -0.141 4.141 13 C -0.194 4.194 14 C -0.098 4.098 15 C -0.210 4.210 16 C 0.065 3.935 17 C -0.497 4.497 18 H 0.080 0.920 19 C 0.032 3.968 20 N -0.827 5.827 21 Si 0.980 3.020 22 H -0.262 1.262 23 H -0.271 1.271 24 H -0.259 1.259 25 C -0.114 4.114 26 C 0.144 3.856 27 F -0.119 7.119 28 H 0.189 0.811 29 H 0.167 0.833 30 H 0.427 0.573 31 H 0.136 0.864 32 H 0.137 0.863 33 H 0.107 0.893 34 H 0.287 0.713 35 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -0.624 7.022 11.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.100 5.100 2 C -0.044 4.044 3 C -0.085 4.085 4 C 0.139 3.861 5 F -0.099 7.099 6 C -0.133 4.133 7 C -0.072 4.072 8 C 0.016 3.984 9 N -0.302 5.302 10 C 0.367 3.633 11 O -0.422 6.422 12 C -0.144 4.144 13 C -0.213 4.213 14 C -0.116 4.116 15 C -0.230 4.230 16 C 0.063 3.937 17 C -0.526 4.526 18 H 0.098 0.902 19 C -0.183 4.183 20 N -0.453 5.453 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.195 1.195 24 H -0.182 1.182 25 C -0.135 4.135 26 C 0.119 3.881 27 F -0.097 7.097 28 H 0.207 0.793 29 H 0.184 0.816 30 H 0.268 0.732 31 H 0.154 0.846 32 H 0.154 0.846 33 H 0.125 0.875 34 H 0.098 0.902 35 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -10.857 -1.327 7.562 13.297 hybrid contribution 0.771 0.118 -0.520 0.937 sum -10.086 -1.209 7.041 12.360 Atomic orbital electron populations 1.81247 1.12384 1.08502 1.07890 1.25055 0.92036 0.93631 0.93718 1.15526 0.84617 1.07140 1.01227 1.17225 0.89902 0.92352 0.86651 1.91579 1.80561 1.75485 1.62250 1.21330 0.90324 1.00836 1.00803 1.21701 1.03065 0.92928 0.89528 1.17746 0.88237 0.99463 0.92914 1.43264 1.17186 1.29559 1.40167 1.18707 0.80038 0.82509 0.82089 1.90640 1.66573 1.29221 1.55763 1.19550 0.96100 0.99854 0.98925 1.20891 1.00793 0.98603 1.01030 1.20916 0.94347 0.99447 0.96931 1.21481 0.97932 0.98654 1.04949 1.17946 0.93344 0.90690 0.91716 1.19834 0.98793 1.35246 0.98772 0.90166 1.26723 1.02930 0.94348 0.94291 1.69821 1.37903 1.34177 1.03393 0.85223 0.77015 0.78302 0.79346 1.18645 1.19527 1.18243 1.21507 0.92467 1.00099 0.99396 1.16750 0.87339 0.95121 0.88854 1.91556 1.80130 1.75353 1.62687 0.79337 0.81617 0.73233 0.84596 0.84555 0.87503 0.90229 0.87302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -11.58 18.54 19.00 0.35 -11.23 16 2 C 0.27 6.35 14.62 88.33 1.29 7.64 16 3 C -0.08 -1.56 5.75 -21.24 -0.12 -1.69 16 4 C 0.16 2.75 7.27 22.68 0.16 2.91 16 5 F -0.12 -2.15 16.80 44.97 0.76 -1.39 16 6 C -0.11 -1.72 10.00 22.26 0.22 -1.50 16 7 C -0.05 -1.09 8.75 22.43 0.20 -0.89 16 8 C 0.11 2.59 6.41 38.11 0.24 2.83 16 9 N -0.66 -17.23 5.23 -305.94 -1.60 -18.83 16 10 C 0.57 20.65 7.65 86.79 0.66 21.32 16 11 O -0.54 -22.06 13.37 -3.93 -0.05 -22.12 16 12 C -0.14 -5.80 5.87 -20.14 -0.12 -5.92 16 13 C -0.19 -6.71 9.54 22.70 0.22 -6.49 16 14 C -0.10 -3.55 10.01 22.18 0.22 -3.33 16 15 C -0.21 -9.11 9.78 22.77 0.22 -8.89 16 16 C 0.07 3.28 5.55 -21.32 -0.12 3.16 16 17 C -0.50 -25.43 9.06 23.47 0.21 -25.22 16 18 H 0.08 3.92 7.88 -2.91 -0.02 3.89 16 19 C 0.03 1.54 5.23 85.25 0.45 1.99 16 20 N -0.83 -42.45 10.86 21.82 0.24 -42.22 16 21 Si 0.98 37.28 29.58 68.60 2.03 39.31 16 22 H -0.26 -9.54 7.11 99.48 0.71 -8.84 16 23 H -0.27 -9.98 7.11 99.48 0.71 -9.27 16 24 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 25 C -0.11 -5.69 8.21 23.01 0.19 -5.50 16 26 C 0.14 3.00 7.28 22.79 0.17 3.16 16 27 F -0.12 -2.59 16.39 44.97 0.74 -1.85 16 28 H 0.19 1.71 8.06 -2.91 -0.02 1.69 16 29 H 0.17 4.23 5.69 -2.91 -0.02 4.21 16 30 H 0.43 9.21 6.54 -92.71 -0.61 8.60 16 31 H 0.14 3.45 6.39 -2.91 -0.02 3.43 16 32 H 0.14 3.83 8.06 -2.91 -0.02 3.80 16 33 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 34 H 0.29 13.53 8.30 -92.71 -0.77 12.76 16 35 H 0.11 6.00 5.79 -2.91 -0.02 5.98 16 Total: -1.00 -60.23 327.84 7.16 -53.07 By element: Atomic # 1 Polarization: 21.05 SS G_CDS: 0.60 Total: 21.65 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 4.10 Total: -16.40 kcal Atomic # 7 Polarization: -71.27 SS G_CDS: -1.01 Total: -72.28 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: -0.05 Total: -22.12 kcal Atomic # 9 Polarization: -4.73 SS G_CDS: 1.49 Total: -3.24 kcal Atomic # 14 Polarization: 37.28 SS G_CDS: 2.03 Total: 39.31 kcal Total: -60.23 7.16 -53.07 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188677558.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.068 kcal (2) G-P(sol) polarization free energy of solvation -60.226 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.069 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds