Wall clock time and date at job start Tue Mar 31 2020 15:23:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39773 * 120.16590 * 203.70959 * 3 2 1 5 5 C 1.37741 * 119.98047 * 179.97438 * 4 3 2 6 6 C 1.38797 * 120.31912 * 0.27530 * 5 4 3 7 7 F 1.35098 * 119.82738 * 179.72501 * 6 5 4 8 8 C 1.38478 * 120.33728 * 359.44265 * 6 5 4 9 9 F 1.35098 * 119.99219 * 180.25601 * 8 6 5 10 10 C 1.38891 * 120.01554 * 0.55844 * 8 6 5 11 11 N 1.39432 * 120.16015 * 179.70127 * 10 8 6 12 12 C 1.34782 * 119.99846 * 299.27601 * 11 10 8 13 13 O 1.21553 * 120.00021 * 7.07233 * 12 11 10 14 14 C 1.47849 * 119.99890 * 187.06947 * 12 11 10 15 15 C 1.39937 * 120.02459 * 359.73162 * 14 12 11 16 16 C 1.38326 * 120.35435 * 179.69089 * 15 14 12 17 17 C 1.37762 * 120.40963 * 0.60141 * 16 15 14 18 18 C 1.40746 * 120.04474 * 359.68057 * 17 16 15 19 19 C 1.41441 * 120.17612 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00019 * 340.43311 * 19 18 17 21 21 C 1.39945 * 120.00045 * 160.44180 * 19 18 17 22 22 N 1.30822 * 119.99530 * 330.01573 * 21 19 18 23 23 Si 1.86797 * 119.99796 * 150.01675 * 21 19 18 24 24 H 1.48504 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47142 * 120.00034 * 23 21 19 26 26 H 1.48503 * 109.47053 * 239.99766 * 23 21 19 27 27 C 1.39011 * 120.02707 * 180.02562 * 14 12 11 28 28 H 1.08003 * 120.01297 * 359.95786 * 4 3 2 29 29 H 1.08001 * 119.84210 * 180.02562 * 5 4 3 30 30 H 0.96998 * 120.00119 * 119.27735 * 11 10 8 31 31 H 1.07995 * 119.82711 * 359.97438 * 15 14 12 32 32 H 1.07997 * 119.79970 * 180.29746 * 16 15 14 33 33 H 1.08002 * 119.97323 * 179.69523 * 17 16 15 34 34 H 0.97009 * 119.99666 * 180.02562 * 22 21 19 35 35 H 1.07999 * 120.20149 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 1.1074 0.4859 5 6 4.6473 1.1037 0.4846 6 6 5.3446 0.0071 -0.0028 7 9 6.6955 0.0163 -0.0046 8 6 4.6626 -1.0988 -0.4820 9 9 5.3483 -2.1645 -0.9501 10 6 3.2737 -1.1100 -0.4873 11 7 2.5840 -2.2194 -0.9748 12 6 2.7470 -2.6046 -2.2561 13 8 3.5884 -2.0677 -2.9499 14 6 1.9024 -3.6804 -2.8177 15 6 0.9375 -4.3028 -2.0178 16 6 0.1393 -5.3056 -2.5381 17 6 0.2932 -5.7117 -3.8455 18 6 1.2624 -5.1014 -4.6635 19 6 1.4223 -5.5157 -6.0064 20 1 1.0502 -6.4791 -6.3222 21 6 2.0629 -4.6774 -6.9258 22 7 1.9958 -3.3786 -6.7838 23 14 3.0137 -5.4129 -8.3556 24 1 2.9376 -6.8946 -8.2907 25 1 2.4258 -4.9421 -9.6354 26 1 4.4341 -4.9868 -8.2769 27 6 2.0704 -4.0785 -4.1390 28 1 2.7324 1.9654 0.8621 29 1 5.1873 1.9599 0.8610 30 1 1.9869 -2.7139 -0.3919 31 1 0.8122 -3.9955 -0.9901 32 1 -0.6058 -5.7766 -1.9141 33 1 -0.3305 -6.4987 -4.2430 34 1 2.4396 -2.7975 -7.4213 35 1 2.8168 -3.6039 -4.7587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001188682782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:50 Heat of formation + Delta-G solvation = -43.848660 kcal Electronic energy + Delta-G solvation = -26282.886447 eV Core-core repulsion = 22074.971028 eV Total energy + Delta-G solvation = -4207.915418 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.63963 -48.64740 -40.45004 -38.80636 -37.12062 -36.49306 -34.78119 -33.85413 -31.10776 -30.88790 -29.66556 -29.38306 -25.48208 -24.44283 -23.96341 -22.22096 -21.09683 -20.00700 -19.62341 -18.44347 -17.93486 -17.62578 -16.72672 -16.52680 -16.16420 -15.79827 -15.26517 -15.00812 -14.79584 -14.67493 -14.39566 -14.14799 -14.04626 -13.95632 -13.62053 -13.36312 -12.89317 -12.77578 -12.60251 -12.55760 -12.07324 -11.96791 -11.78613 -11.28998 -11.17428 -10.85657 -10.58865 -10.26176 -10.11781 -9.78267 -9.42894 -9.18221 -9.04965 -8.80603 -7.79500 -7.69023 -7.02117 -4.47286 0.09814 0.57125 1.99083 2.40414 2.44681 2.70984 2.94212 3.01819 3.07228 3.11408 3.30144 3.39169 3.56873 3.71539 3.83533 4.07069 4.29855 4.43083 4.53521 4.80958 5.17973 5.38816 5.44732 5.48863 5.50310 5.60528 5.97974 6.10570 6.17494 6.54163 6.62543 6.85683 6.88550 7.05598 7.25193 7.25717 7.39067 7.61498 7.72940 7.84270 8.05002 8.37276 8.51297 8.68230 8.73094 9.94272 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003696 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.060707 B = 7574.338977 C = 8667.318459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.391 5.391 2 C 0.251 3.749 3 C -0.025 4.025 4 C -0.042 4.042 5 C -0.136 4.136 6 C 0.106 3.894 7 F -0.119 7.119 8 C 0.077 3.923 9 F -0.106 7.106 10 C 0.195 3.805 11 N -0.690 5.690 12 C 0.570 3.430 13 O -0.516 6.516 14 C -0.121 4.121 15 C -0.229 4.229 16 C -0.088 4.088 17 C -0.215 4.215 18 C 0.101 3.899 19 C -0.459 4.459 20 H 0.086 0.914 21 C 0.081 3.919 22 N -0.763 5.763 23 Si 0.902 3.098 24 H -0.256 1.256 25 H -0.272 1.272 26 H -0.268 1.268 27 C -0.100 4.100 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.418 0.582 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.287 0.713 35 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.237 8.306 13.647 16.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.066 5.066 2 C -0.065 4.065 3 C -0.031 4.031 4 C -0.063 4.063 5 C -0.155 4.155 6 C 0.085 3.915 7 F -0.097 7.097 8 C 0.055 3.945 9 F -0.084 7.084 10 C 0.096 3.904 11 N -0.343 5.343 12 C 0.363 3.637 13 O -0.390 6.390 14 C -0.125 4.125 15 C -0.249 4.249 16 C -0.106 4.106 17 C -0.235 4.235 18 C 0.098 3.902 19 C -0.486 4.486 20 H 0.104 0.896 21 C -0.141 4.141 22 N -0.385 5.385 23 Si 0.726 3.274 24 H -0.180 1.180 25 H -0.198 1.198 26 H -0.193 1.193 27 C -0.120 4.120 28 H 0.172 0.828 29 H 0.176 0.824 30 H 0.258 0.742 31 H 0.106 0.894 32 H 0.113 0.887 33 H 0.115 0.885 34 H 0.099 0.901 35 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 4.169 8.832 12.939 16.212 hybrid contribution 0.921 -0.641 -0.487 1.223 sum 5.090 8.191 12.453 15.750 Atomic orbital electron populations 1.81295 1.11509 1.06192 1.07555 1.25138 0.92063 0.94807 0.94447 1.15952 0.85283 0.94466 1.07348 1.20921 0.92981 0.96438 0.95932 1.20950 0.94090 0.97947 1.02524 1.17743 0.77769 0.94466 1.01566 1.91570 1.27556 1.96559 1.94055 1.17548 0.88934 0.86000 1.02059 1.91612 1.78485 1.52607 1.85710 1.17257 0.88602 0.88627 0.95875 1.43568 1.48042 1.29088 1.13552 1.19161 0.82537 0.82661 0.79313 1.90759 1.33995 1.55537 1.58754 1.19191 0.99260 0.97966 0.96044 1.20233 1.03160 1.03828 0.97661 1.20420 0.98004 0.96822 0.95352 1.21039 1.02031 1.05655 0.94795 1.17534 0.89147 0.90245 0.93253 1.19627 1.32669 1.03147 0.93184 0.89598 1.26018 0.94381 0.94164 0.99567 1.69875 1.30203 1.04382 1.34013 0.86353 0.80085 0.81101 0.79905 1.17987 1.19776 1.19255 1.21456 0.99895 0.98734 0.91911 0.82765 0.82401 0.74223 0.89428 0.88745 0.88466 0.90147 0.85489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.39 -5.85 18.54 41.84 0.78 -5.08 16 2 C 0.25 3.22 14.81 -22.47 -0.33 2.88 16 3 C -0.02 -0.27 5.76 -106.61 -0.61 -0.88 16 4 C -0.04 -0.30 9.75 -39.19 -0.38 -0.68 16 5 C -0.14 -0.97 10.00 -39.56 -0.40 -1.36 16 6 C 0.11 1.16 7.30 -39.29 -0.29 0.87 16 7 F -0.12 -1.39 17.17 2.25 0.04 -1.35 16 8 C 0.08 1.09 6.66 -39.25 -0.26 0.83 16 9 F -0.11 -1.83 15.64 2.25 0.04 -1.79 16 10 C 0.20 2.71 5.76 -83.38 -0.48 2.23 16 11 N -0.69 -11.21 4.49 -10.47 -0.05 -11.25 16 12 C 0.57 12.08 7.30 -12.33 -0.09 11.99 16 13 O -0.52 -12.37 14.88 5.32 0.08 -12.29 16 14 C -0.12 -2.81 5.87 -105.04 -0.62 -3.42 16 15 C -0.23 -4.75 9.54 -38.91 -0.37 -5.13 16 16 C -0.09 -1.85 10.01 -39.72 -0.40 -2.25 16 17 C -0.22 -5.04 9.78 -38.81 -0.38 -5.42 16 18 C 0.10 2.62 5.60 -106.87 -0.60 2.02 16 19 C -0.46 -11.80 8.98 -37.72 -0.34 -12.14 16 20 H 0.09 2.10 8.00 -52.49 -0.42 1.68 16 21 C 0.08 2.01 4.88 -17.34 -0.08 1.92 16 22 N -0.76 -19.68 11.44 55.55 0.64 -19.04 16 23 Si 0.90 18.25 29.65 -169.99 -5.04 13.21 16 24 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 25 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 26 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 27 C -0.10 -2.61 8.33 -38.44 -0.32 -2.93 16 28 H 0.15 0.60 8.06 -52.48 -0.42 0.18 16 29 H 0.16 0.60 8.06 -52.49 -0.42 0.18 16 30 H 0.42 5.85 6.87 -40.82 -0.28 5.56 16 31 H 0.09 1.51 6.40 -52.49 -0.34 1.17 16 32 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 33 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 34 H 0.29 6.75 8.30 -40.82 -0.34 6.41 16 35 H 0.13 3.56 5.85 -52.49 -0.31 3.25 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -30.71 331.10 -6.65 -37.36 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: -2.17 Total: 6.72 kcal Atomic # 6 Polarization: -5.52 SS G_CDS: -5.95 Total: -11.47 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 1.36 Total: -35.37 kcal Atomic # 8 Polarization: -12.37 SS G_CDS: 0.08 Total: -12.29 kcal Atomic # 9 Polarization: -3.22 SS G_CDS: 0.07 Total: -3.14 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.04 Total: 13.21 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -30.71 -6.65 -37.36 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.485 kcal (2) G-P(sol) polarization free energy of solvation -30.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds