Wall clock time and date at job start Tue Mar 31 2020 15:23:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39773 * 120.16590 * 203.70959 * 3 2 1 5 5 C 1.37741 * 119.98047 * 179.97438 * 4 3 2 6 6 C 1.38797 * 120.31912 * 0.27530 * 5 4 3 7 7 F 1.35098 * 119.82738 * 179.72501 * 6 5 4 8 8 C 1.38478 * 120.33728 * 359.44265 * 6 5 4 9 9 F 1.35098 * 119.99219 * 180.25601 * 8 6 5 10 10 C 1.38891 * 120.01554 * 0.55844 * 8 6 5 11 11 N 1.39432 * 120.16015 * 179.70127 * 10 8 6 12 12 C 1.34782 * 119.99846 * 299.27601 * 11 10 8 13 13 O 1.21553 * 120.00021 * 7.07233 * 12 11 10 14 14 C 1.47849 * 119.99890 * 187.06947 * 12 11 10 15 15 C 1.39937 * 120.02459 * 359.73162 * 14 12 11 16 16 C 1.38326 * 120.35435 * 179.69089 * 15 14 12 17 17 C 1.37762 * 120.40963 * 0.60141 * 16 15 14 18 18 C 1.40746 * 120.04474 * 359.68057 * 17 16 15 19 19 C 1.41441 * 120.17612 * 180.02562 * 18 17 16 20 20 H 1.07996 * 120.00019 * 340.43311 * 19 18 17 21 21 C 1.39945 * 120.00045 * 160.44180 * 19 18 17 22 22 N 1.30822 * 119.99530 * 330.01573 * 21 19 18 23 23 Si 1.86797 * 119.99796 * 150.01675 * 21 19 18 24 24 H 1.48504 * 109.47264 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47142 * 120.00034 * 23 21 19 26 26 H 1.48503 * 109.47053 * 239.99766 * 23 21 19 27 27 C 1.39011 * 120.02707 * 180.02562 * 14 12 11 28 28 H 1.08003 * 120.01297 * 359.95786 * 4 3 2 29 29 H 1.08001 * 119.84210 * 180.02562 * 5 4 3 30 30 H 0.96998 * 120.00119 * 119.27735 * 11 10 8 31 31 H 1.07995 * 119.82711 * 359.97438 * 15 14 12 32 32 H 1.07997 * 119.79970 * 180.29746 * 16 15 14 33 33 H 1.08002 * 119.97323 * 179.69523 * 17 16 15 34 34 H 0.97009 * 119.99666 * 180.02562 * 22 21 19 35 35 H 1.07999 * 120.20149 * 359.97438 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2699 1.1074 0.4859 5 6 4.6473 1.1037 0.4846 6 6 5.3446 0.0071 -0.0028 7 9 6.6955 0.0163 -0.0046 8 6 4.6626 -1.0988 -0.4820 9 9 5.3483 -2.1645 -0.9501 10 6 3.2737 -1.1100 -0.4873 11 7 2.5840 -2.2194 -0.9748 12 6 2.7470 -2.6046 -2.2561 13 8 3.5884 -2.0677 -2.9499 14 6 1.9024 -3.6804 -2.8177 15 6 0.9375 -4.3028 -2.0178 16 6 0.1393 -5.3056 -2.5381 17 6 0.2932 -5.7117 -3.8455 18 6 1.2624 -5.1014 -4.6635 19 6 1.4223 -5.5157 -6.0064 20 1 1.0502 -6.4791 -6.3222 21 6 2.0629 -4.6774 -6.9258 22 7 1.9958 -3.3786 -6.7838 23 14 3.0137 -5.4129 -8.3556 24 1 2.9376 -6.8946 -8.2907 25 1 2.4258 -4.9421 -9.6354 26 1 4.4341 -4.9868 -8.2769 27 6 2.0704 -4.0785 -4.1390 28 1 2.7324 1.9654 0.8621 29 1 5.1873 1.9599 0.8610 30 1 1.9869 -2.7139 -0.3919 31 1 0.8122 -3.9955 -0.9901 32 1 -0.6058 -5.7766 -1.9141 33 1 -0.3305 -6.4987 -4.2430 34 1 2.4396 -2.7975 -7.4213 35 1 2.8168 -3.6039 -4.7587 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001188682782.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:23:49 Heat of formation + Delta-G solvation = -61.445625 kcal Electronic energy + Delta-G solvation = -26283.649508 eV Core-core repulsion = 22074.971028 eV Total energy + Delta-G solvation = -4208.678480 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -50.62168 -49.69423 -41.73657 -40.09643 -38.84409 -37.53371 -36.16435 -35.63783 -32.48298 -31.97209 -31.43053 -30.67616 -27.31117 -25.66937 -24.98331 -23.54050 -22.89545 -21.57243 -20.62011 -19.79361 -19.34375 -18.64677 -18.11173 -17.65873 -17.35290 -17.08329 -16.85182 -16.54547 -16.06098 -15.98935 -15.66451 -15.41910 -15.20576 -15.06832 -15.03985 -14.64382 -14.59227 -14.34506 -13.68144 -13.63153 -13.55570 -13.09873 -12.99289 -12.87524 -12.81245 -12.59911 -12.22892 -12.05488 -11.59144 -11.31537 -11.11711 -11.01122 -9.95180 -9.90242 -9.62491 -9.51138 -8.85043 -6.40020 -0.78324 -0.30267 0.24217 0.92776 1.33344 1.41589 1.42891 1.51238 1.53815 1.72637 1.88411 2.13758 2.36895 2.48071 2.62370 2.78250 3.19813 3.54097 3.59800 3.63847 3.81772 4.01838 4.33073 4.39807 4.48506 4.64716 4.80113 4.82938 4.89423 5.00617 5.08159 5.12479 5.21272 5.41563 5.50820 5.72594 5.84352 5.94137 6.10390 6.22949 6.27208 6.50904 6.79047 6.86259 6.94946 8.14450 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.014010 B = 0.003696 C = 0.003230 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1998.060707 B = 7574.338977 C = 8667.318459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.272 3.728 3 C -0.024 4.024 4 C -0.010 4.010 5 C -0.102 4.102 6 C 0.104 3.896 7 F -0.125 7.125 8 C 0.042 3.958 9 F -0.137 7.137 10 C 0.165 3.835 11 N -0.675 5.675 12 C 0.571 3.429 13 O -0.554 6.554 14 C -0.132 4.132 15 C -0.212 4.212 16 C -0.087 4.087 17 C -0.222 4.222 18 C 0.073 3.927 19 C -0.498 4.498 20 H 0.088 0.912 21 C 0.042 3.958 22 N -0.805 5.805 23 Si 0.974 3.026 24 H -0.249 1.249 25 H -0.260 1.260 26 H -0.270 1.270 27 C -0.139 4.139 28 H 0.204 0.796 29 H 0.208 0.792 30 H 0.427 0.573 31 H 0.129 0.871 32 H 0.137 0.863 33 H 0.110 0.890 34 H 0.291 0.709 35 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.041 10.108 16.276 19.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.044 4.044 3 C -0.030 4.030 4 C -0.031 4.031 5 C -0.120 4.120 6 C 0.082 3.918 7 F -0.103 7.103 8 C 0.020 3.980 9 F -0.115 7.115 10 C 0.068 3.932 11 N -0.326 5.326 12 C 0.363 3.637 13 O -0.432 6.432 14 C -0.135 4.135 15 C -0.231 4.231 16 C -0.105 4.105 17 C -0.242 4.242 18 C 0.070 3.930 19 C -0.525 4.525 20 H 0.106 0.894 21 C -0.177 4.177 22 N -0.428 5.428 23 Si 0.794 3.206 24 H -0.172 1.172 25 H -0.184 1.184 26 H -0.195 1.195 27 C -0.160 4.160 28 H 0.221 0.779 29 H 0.225 0.775 30 H 0.268 0.732 31 H 0.147 0.853 32 H 0.155 0.845 33 H 0.128 0.872 34 H 0.102 0.898 35 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 3.949 10.640 15.628 19.314 hybrid contribution 0.963 -1.074 -1.026 1.771 sum 4.913 9.566 14.602 18.134 Atomic orbital electron populations 1.81324 1.12713 1.07488 1.09095 1.25312 0.92204 0.93640 0.93216 1.16049 0.84344 0.94809 1.07765 1.21504 0.92943 0.95847 0.92763 1.21514 0.93970 0.97329 0.99218 1.18053 0.77634 0.94567 1.01507 1.91560 1.28111 1.96572 1.94100 1.17972 0.89309 0.86648 1.04075 1.91524 1.79098 1.54314 1.86579 1.17430 0.88676 0.88910 0.98208 1.43137 1.47792 1.29836 1.11851 1.18898 0.81882 0.82168 0.80776 1.90726 1.35430 1.56757 1.60258 1.19527 0.99961 0.98509 0.95529 1.20725 1.00992 1.02293 0.99118 1.20892 0.98416 0.96381 0.94847 1.21345 1.01413 1.05647 0.95784 1.17878 0.90054 0.90921 0.94125 1.19881 1.35019 1.03708 0.93918 0.89401 1.26876 0.94539 0.94199 1.02105 1.69930 1.31578 1.05803 1.35491 0.85283 0.78130 0.80411 0.76758 1.17223 1.18411 1.19497 1.21272 1.00802 1.00575 0.93322 0.77929 0.77527 0.73170 0.85287 0.84476 0.87208 0.89782 0.88732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -12.15 18.54 19.00 0.35 -11.79 16 2 C 0.27 6.30 14.81 88.33 1.31 7.61 16 3 C -0.02 -0.46 5.76 -21.15 -0.12 -0.58 16 4 C -0.01 -0.09 9.75 22.52 0.22 0.13 16 5 C -0.10 -0.91 10.00 22.29 0.22 -0.69 16 6 C 0.10 2.03 7.30 22.46 0.16 2.20 16 7 F -0.13 -2.71 17.17 44.97 0.77 -1.94 16 8 C 0.04 1.18 6.66 22.48 0.15 1.33 16 9 F -0.14 -4.97 15.64 44.97 0.70 -4.26 16 10 C 0.17 4.45 5.76 38.60 0.22 4.67 16 11 N -0.67 -21.84 4.49 -305.31 -1.37 -23.21 16 12 C 0.57 25.04 7.30 86.79 0.63 25.67 16 13 O -0.55 -28.18 14.88 -3.88 -0.06 -28.23 16 14 C -0.13 -6.30 5.87 -20.14 -0.12 -6.41 16 15 C -0.21 -8.53 9.54 22.70 0.22 -8.32 16 16 C -0.09 -3.54 10.01 22.18 0.22 -3.32 16 17 C -0.22 -10.46 9.78 22.77 0.22 -10.24 16 18 C 0.07 3.95 5.60 -21.32 -0.12 3.83 16 19 C -0.50 -26.93 8.98 23.47 0.21 -26.72 16 20 H 0.09 4.50 8.00 -2.91 -0.02 4.48 16 21 C 0.04 2.15 4.88 85.26 0.42 2.57 16 22 N -0.80 -44.19 11.44 21.83 0.25 -43.94 16 23 Si 0.97 39.04 29.65 68.60 2.03 41.08 16 24 H -0.25 -9.56 7.11 99.48 0.71 -8.85 16 25 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 26 H -0.27 -10.79 7.11 99.48 0.71 -10.08 16 27 C -0.14 -7.72 8.33 23.01 0.19 -7.53 16 28 H 0.20 0.03 8.06 -2.91 -0.02 0.00 16 29 H 0.21 0.00 8.06 -2.91 -0.02 -0.02 16 30 H 0.43 11.48 6.87 -92.71 -0.64 10.85 16 31 H 0.13 4.06 6.40 -2.91 -0.02 4.04 16 32 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 33 H 0.11 4.76 8.06 -2.91 -0.02 4.74 16 34 H 0.29 14.58 8.30 -92.70 -0.77 13.81 16 35 H 0.09 5.78 5.85 -2.91 -0.02 5.76 16 Total: -1.00 -75.36 331.10 7.28 -68.08 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.56 Total: 20.03 kcal Atomic # 6 Polarization: -19.84 SS G_CDS: 4.04 Total: -15.80 kcal Atomic # 7 Polarization: -78.18 SS G_CDS: -0.77 Total: -78.95 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.06 Total: -28.23 kcal Atomic # 9 Polarization: -7.68 SS G_CDS: 1.48 Total: -6.20 kcal Atomic # 14 Polarization: 39.04 SS G_CDS: 2.03 Total: 41.08 kcal Total: -75.36 7.28 -68.08 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001188682782.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.633 kcal (2) G-P(sol) polarization free energy of solvation -75.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds