Wall clock time and date at job start Tue Mar 31 2020 14:46:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99928 * 2 1 4 4 H 1.48496 * 109.47470 * 239.99961 * 3 2 1 5 5 H 1.48499 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47175 * 120.00116 * 3 2 1 7 7 C 1.37877 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00013 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00233 * 0.02562 * 7 2 1 10 10 O 1.42109 * 106.40374 * 66.45705 * 9 7 2 11 11 O 1.42094 * 106.40120 * 293.54109 * 9 7 2 12 12 N 1.65599 * 107.21996 * 179.97438 * 9 7 2 13 13 C 1.46923 * 120.62951 * 90.00106 * 12 9 7 14 14 C 1.53191 * 108.77446 * 233.58737 * 13 12 9 15 15 C 1.53042 * 109.31275 * 305.36409 * 14 13 12 16 16 C 1.53035 * 109.53710 * 61.36515 * 15 14 13 17 17 H 1.08999 * 109.49998 * 58.58683 * 16 15 14 18 18 S 1.81399 * 109.49913 * 178.68629 * 16 15 14 19 19 C 1.76208 * 102.99897 * 292.74764 * 18 16 15 20 20 C 1.39549 * 120.87001 * 275.17945 * 19 18 16 21 21 C 1.37857 * 119.05837 * 179.70402 * 20 19 18 22 22 N 1.32017 * 120.85010 * 0.58171 * 21 20 19 23 23 C 1.32018 * 121.92141 * 359.71208 * 22 21 20 24 24 C 1.37859 * 120.84878 * 359.97438 * 23 22 21 25 25 C 1.46925 * 120.62935 * 269.97484 * 12 9 7 26 26 H 0.96998 * 119.99605 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.58717 * 113.79951 * 13 12 9 28 28 H 1.09005 * 109.70238 * 353.44238 * 13 12 9 29 29 H 1.08998 * 109.49659 * 185.41215 * 14 13 12 30 30 H 1.08997 * 109.49798 * 65.31605 * 14 13 12 31 31 H 1.08995 * 109.46286 * 181.39040 * 15 14 13 32 32 H 1.09007 * 109.46010 * 301.34645 * 15 14 13 33 33 H 1.08002 * 120.46652 * 359.97438 * 20 19 18 34 34 H 1.08004 * 119.57713 * 180.29182 * 21 20 19 35 35 H 1.08004 * 119.57493 * 180.02562 * 23 22 21 36 36 H 1.08003 * 120.46809 * 180.02562 * 24 23 22 37 37 H 1.09002 * 109.58610 * 246.19784 * 25 12 9 38 38 H 1.08996 * 109.58772 * 6.48565 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1237 -2.7200 -0.0019 10 8 0.4520 -2.7945 -1.2520 11 8 0.4511 -2.7961 1.2475 12 7 2.2485 -3.9354 -0.0030 13 6 2.7569 -4.4859 1.2608 14 6 4.2874 -4.4211 1.2465 15 6 4.8123 -5.1299 -0.0042 16 6 4.2871 -4.4193 -1.2537 17 1 4.6070 -3.3774 -1.2412 18 16 4.9411 -5.2366 -2.7351 19 6 6.6655 -4.8829 -2.6543 20 6 7.1751 -3.6855 -3.1581 21 6 8.5296 -3.4446 -3.0698 22 7 9.3415 -4.3337 -2.5284 23 6 8.8992 -5.4803 -2.0461 24 6 7.5578 -5.7952 -2.0899 25 6 2.7565 -4.4840 -1.2677 26 1 -0.4849 0.8401 -0.0004 27 1 2.4359 -5.5226 1.3631 28 1 2.3742 -3.9006 2.0969 29 1 4.6807 -4.9136 2.1358 30 1 4.6073 -3.3792 1.2354 31 1 5.9020 -5.1069 -0.0044 32 1 4.4712 -6.1653 -0.0050 33 1 6.5171 -2.9560 -3.6068 34 1 8.9324 -2.5185 -3.4528 35 1 9.5972 -6.1802 -1.6108 36 1 7.2027 -6.7349 -1.6932 37 1 2.4356 -5.5205 -1.3715 38 1 2.3715 -3.8970 -2.1015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192960984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:02 Heat of formation + Delta-G solvation = -57.507864 kcal Electronic energy + Delta-G solvation = -23705.293199 eV Core-core repulsion = 20186.069811 eV Total energy + Delta-G solvation = -3519.223388 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.16742 -38.11049 -35.37980 -34.03601 -33.17533 -32.80479 -31.94215 -31.55741 -30.91121 -26.18071 -24.37794 -24.01653 -23.64871 -23.06503 -20.39324 -18.62279 -18.19777 -17.66068 -16.49298 -16.39635 -16.03389 -15.48715 -15.21375 -15.11231 -14.59605 -14.25189 -14.14959 -14.01322 -13.85830 -13.64709 -13.34471 -13.09587 -12.29196 -12.07876 -12.07037 -11.88403 -11.43392 -11.24801 -11.08251 -11.01909 -10.84103 -10.74250 -10.66202 -10.36448 -10.16394 -10.14875 -9.79133 -9.46384 -9.43196 -9.28617 -8.99803 -8.35205 -7.88836 -6.74511 -5.37509 0.54857 0.85403 1.49476 2.18697 2.47606 3.04024 3.09193 3.13957 3.52126 4.00466 4.16392 4.44324 4.52095 4.59320 4.72927 4.76899 4.79643 4.84286 5.11934 5.20489 5.22037 5.44082 5.46454 5.48969 5.64318 5.66422 5.78721 5.80358 5.87106 5.97535 6.01101 6.07427 6.13588 6.33067 6.33254 6.44175 6.69010 7.27262 7.44728 7.63410 7.90635 8.83845 10.19264 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.004192 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.691879 B = 6678.442964 C = 7646.172610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.845 5.845 2 C 0.134 3.866 3 Si 0.918 3.082 4 H -0.264 1.264 5 H -0.275 1.275 6 H -0.264 1.264 7 C -1.020 5.020 8 H 0.100 0.900 9 S 2.713 3.287 10 O -1.001 7.001 11 O -1.000 7.000 12 N -1.006 6.006 13 C 0.123 3.877 14 C -0.132 4.132 15 C -0.106 4.106 16 C -0.077 4.077 17 H 0.098 0.902 18 S -0.140 6.140 19 C -0.065 4.065 20 C -0.128 4.128 21 C 0.094 3.906 22 N -0.474 5.474 23 C 0.091 3.909 24 C -0.126 4.126 25 C 0.150 3.850 26 H 0.292 0.708 27 H 0.060 0.940 28 H 0.094 0.906 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.075 0.925 33 H 0.146 0.854 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.143 0.857 37 H 0.068 0.932 38 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.879 -9.758 -2.482 17.965 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.474 5.474 2 C -0.084 4.084 3 Si 0.742 3.258 4 H -0.189 1.189 5 H -0.200 1.200 6 H -0.189 1.189 7 C -1.153 5.153 8 H 0.118 0.882 9 S 2.814 3.186 10 O -0.991 6.991 11 O -0.991 6.991 12 N -0.841 5.841 13 C -0.003 4.003 14 C -0.173 4.173 15 C -0.145 4.145 16 C -0.207 4.207 17 H 0.117 0.883 18 S 0.095 5.905 19 C -0.185 4.185 20 C -0.150 4.150 21 C -0.064 4.064 22 N -0.183 5.183 23 C -0.068 4.068 24 C -0.149 4.149 25 C 0.022 3.978 26 H 0.102 0.898 27 H 0.078 0.922 28 H 0.113 0.887 29 H 0.091 0.909 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.163 0.837 34 H 0.178 0.822 35 H 0.176 0.824 36 H 0.161 0.839 37 H 0.087 0.913 38 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.000 -10.252 -3.250 17.654 hybrid contribution 0.949 1.799 0.808 2.188 sum 14.949 -8.454 -2.442 17.347 Atomic orbital electron populations 1.69883 1.06759 1.30900 1.39880 1.24732 0.94447 1.00723 0.88496 0.86230 0.79948 0.79829 0.79755 1.18864 1.20017 1.18894 1.30558 1.05929 1.11796 1.67044 0.88169 1.00628 0.72150 0.72935 0.72873 1.93363 1.72635 1.87493 1.45618 1.93358 1.72544 1.87496 1.45689 1.58318 1.61585 1.54983 1.09196 1.21254 0.92998 0.99427 0.86585 1.21969 0.96667 1.01606 0.97076 1.21774 0.99673 0.99822 0.93248 1.23954 1.00407 1.02454 0.93901 0.88321 1.85503 0.97182 1.72311 1.35462 1.22249 0.98570 0.96921 1.00745 1.22717 0.97274 0.96888 0.98134 1.22833 0.89832 0.98240 0.95545 1.67725 1.39889 1.02514 1.08128 1.22812 0.93721 0.93940 0.96286 1.22601 0.94237 1.00175 0.97883 1.20859 0.88781 1.00489 0.87708 0.89761 0.92151 0.88748 0.90858 0.91073 0.92249 0.90664 0.83652 0.82233 0.82350 0.83874 0.91338 0.88035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -24.45 13.19 55.43 0.73 -23.72 16 2 C 0.13 3.67 5.46 -17.82 -0.10 3.57 16 3 Si 0.92 20.20 29.54 -169.99 -5.02 15.18 16 4 H -0.26 -5.61 7.11 56.52 0.40 -5.20 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 6 H -0.26 -5.62 7.11 56.52 0.40 -5.22 16 7 C -1.02 -27.26 9.74 30.60 0.30 -26.96 16 8 H 0.10 2.44 7.81 -52.48 -0.41 2.03 16 9 S 2.71 70.18 4.97 -107.50 -0.53 69.65 16 10 O -1.00 -28.51 16.73 -57.17 -0.96 -29.47 16 11 O -1.00 -28.43 16.74 -57.17 -0.96 -29.39 16 12 N -1.01 -19.51 3.29 -113.52 -0.37 -19.88 16 13 C 0.12 1.98 6.37 -3.71 -0.02 1.95 16 14 C -0.13 -1.72 6.08 -26.61 -0.16 -1.89 16 15 C -0.11 -1.27 5.09 -26.69 -0.14 -1.41 16 16 C -0.08 -1.08 2.76 -26.61 -0.07 -1.16 16 17 H 0.10 1.49 8.14 -51.93 -0.42 1.07 16 18 S -0.14 -1.76 21.17 -107.50 -2.28 -4.03 16 19 C -0.07 -0.74 5.27 -38.61 -0.20 -0.95 16 20 C -0.13 -1.39 9.90 -39.23 -0.39 -1.78 16 21 C 0.09 0.96 11.17 -17.61 -0.20 0.76 16 22 N -0.47 -5.28 10.36 -13.36 -0.14 -5.42 16 23 C 0.09 0.86 11.17 -17.61 -0.20 0.66 16 24 C -0.13 -1.23 9.32 -39.23 -0.37 -1.59 16 25 C 0.15 2.50 5.67 -3.71 -0.02 2.48 16 26 H 0.29 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.09 1.63 7.13 -51.93 -0.37 1.26 16 29 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.06 0.66 7.13 -51.93 -0.37 0.29 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.16 1.22 8.06 -52.48 -0.42 0.80 16 35 H 0.16 1.03 8.06 -52.48 -0.42 0.61 16 36 H 0.14 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.10 1.86 7.12 -51.93 -0.37 1.49 16 LS Contribution 343.92 15.07 5.18 5.18 Total: -1.00 -34.32 343.92 -10.79 -45.11 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -4.88 Total: 3.09 kcal Atomic # 6 Polarization: -24.73 SS G_CDS: -1.57 Total: -26.29 kcal Atomic # 7 Polarization: -49.24 SS G_CDS: 0.22 Total: -49.02 kcal Atomic # 8 Polarization: -56.95 SS G_CDS: -1.91 Total: -58.86 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Atomic # 16 Polarization: 68.43 SS G_CDS: -2.81 Total: 65.62 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -34.32 -10.79 -45.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.394 kcal (2) G-P(sol) polarization free energy of solvation -34.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds