Wall clock time and date at job start Tue Mar 31 2020 14:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99928 * 2 1 4 4 H 1.48496 * 109.47470 * 239.99961 * 3 2 1 5 5 H 1.48499 * 109.47263 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.47175 * 120.00116 * 3 2 1 7 7 C 1.37877 * 120.00075 * 180.02562 * 2 1 3 8 8 H 1.08005 * 120.00013 * 179.97438 * 7 2 1 9 9 S 1.76194 * 120.00233 * 0.02562 * 7 2 1 10 10 O 1.42109 * 106.40374 * 66.45705 * 9 7 2 11 11 O 1.42094 * 106.40120 * 293.54109 * 9 7 2 12 12 N 1.65599 * 107.21996 * 179.97438 * 9 7 2 13 13 C 1.46923 * 120.62951 * 90.00106 * 12 9 7 14 14 C 1.53191 * 108.77446 * 233.58737 * 13 12 9 15 15 C 1.53042 * 109.31275 * 305.36409 * 14 13 12 16 16 C 1.53035 * 109.53710 * 61.36515 * 15 14 13 17 17 H 1.08999 * 109.49998 * 58.58683 * 16 15 14 18 18 S 1.81399 * 109.49913 * 178.68629 * 16 15 14 19 19 C 1.76208 * 102.99897 * 292.74764 * 18 16 15 20 20 C 1.39549 * 120.87001 * 275.17945 * 19 18 16 21 21 C 1.37857 * 119.05837 * 179.70402 * 20 19 18 22 22 N 1.32017 * 120.85010 * 0.58171 * 21 20 19 23 23 C 1.32018 * 121.92141 * 359.71208 * 22 21 20 24 24 C 1.37859 * 120.84878 * 359.97438 * 23 22 21 25 25 C 1.46925 * 120.62935 * 269.97484 * 12 9 7 26 26 H 0.96998 * 119.99605 * 0.02562 * 1 2 3 27 27 H 1.09007 * 109.58717 * 113.79951 * 13 12 9 28 28 H 1.09005 * 109.70238 * 353.44238 * 13 12 9 29 29 H 1.08998 * 109.49659 * 185.41215 * 14 13 12 30 30 H 1.08997 * 109.49798 * 65.31605 * 14 13 12 31 31 H 1.08995 * 109.46286 * 181.39040 * 15 14 13 32 32 H 1.09007 * 109.46010 * 301.34645 * 15 14 13 33 33 H 1.08002 * 120.46652 * 359.97438 * 20 19 18 34 34 H 1.08004 * 119.57713 * 180.29182 * 21 20 19 35 35 H 1.08004 * 119.57493 * 180.02562 * 23 22 21 36 36 H 1.08003 * 120.46809 * 180.02562 * 24 23 22 37 37 H 1.09002 * 109.58610 * 246.19784 * 25 12 9 38 38 H 1.08996 * 109.58772 * 6.48565 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 16 1.1237 -2.7200 -0.0019 10 8 0.4520 -2.7945 -1.2520 11 8 0.4511 -2.7961 1.2475 12 7 2.2485 -3.9354 -0.0030 13 6 2.7569 -4.4859 1.2608 14 6 4.2874 -4.4211 1.2465 15 6 4.8123 -5.1299 -0.0042 16 6 4.2871 -4.4193 -1.2537 17 1 4.6070 -3.3774 -1.2412 18 16 4.9411 -5.2366 -2.7351 19 6 6.6655 -4.8829 -2.6543 20 6 7.1751 -3.6855 -3.1581 21 6 8.5296 -3.4446 -3.0698 22 7 9.3415 -4.3337 -2.5284 23 6 8.8992 -5.4803 -2.0461 24 6 7.5578 -5.7952 -2.0899 25 6 2.7565 -4.4840 -1.2677 26 1 -0.4849 0.8401 -0.0004 27 1 2.4359 -5.5226 1.3631 28 1 2.3742 -3.9006 2.0969 29 1 4.6807 -4.9136 2.1358 30 1 4.6073 -3.3792 1.2354 31 1 5.9020 -5.1069 -0.0044 32 1 4.4712 -6.1653 -0.0050 33 1 6.5171 -2.9560 -3.6068 34 1 8.9324 -2.5185 -3.4528 35 1 9.5972 -6.1802 -1.6108 36 1 7.2027 -6.7349 -1.6932 37 1 2.4356 -5.5205 -1.3715 38 1 2.3715 -3.8970 -2.1015 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192960984.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:01 Heat of formation + Delta-G solvation = -81.642733 kcal Electronic energy + Delta-G solvation = -23706.339765 eV Core-core repulsion = 20186.069811 eV Total energy + Delta-G solvation = -3520.269954 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.92240 -39.37202 -37.51589 -36.18493 -35.22302 -33.72202 -33.13198 -32.30253 -32.13175 -28.28374 -25.58102 -24.95079 -24.43282 -24.18309 -21.73311 -20.44736 -19.37021 -19.01293 -18.37207 -17.26959 -17.10213 -16.87945 -16.77206 -16.34939 -16.01252 -15.67750 -15.36171 -15.08785 -14.92649 -14.71825 -14.65158 -14.45592 -14.00309 -13.49238 -13.40350 -13.03134 -12.92632 -12.81043 -12.65784 -12.54441 -12.51371 -12.36083 -12.08958 -12.00086 -11.68404 -11.50900 -11.26508 -10.99067 -10.62954 -10.33058 -10.19439 -9.87981 -8.86954 -8.76899 -7.51050 -0.32174 0.12096 0.21237 0.65358 1.30893 1.32417 1.45439 1.48163 2.17333 2.55378 2.75395 2.79640 3.50895 3.57381 3.62831 3.78553 3.82896 3.97989 4.01854 4.04952 4.10363 4.23940 4.33312 4.38787 4.52268 4.54858 4.71601 4.74987 4.79385 4.81802 4.92237 4.97171 5.02240 5.05625 5.17737 5.31368 5.37089 5.61623 5.86301 5.88035 6.75582 6.89366 8.18270 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014605 B = 0.004192 C = 0.003661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1916.691879 B = 6678.442964 C = 7646.172610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.073 3.927 3 Si 0.985 3.015 4 H -0.251 1.251 5 H -0.263 1.263 6 H -0.250 1.250 7 C -1.038 5.038 8 H 0.116 0.884 9 S 2.717 3.283 10 O -1.039 7.039 11 O -1.037 7.037 12 N -1.003 6.003 13 C 0.112 3.888 14 C -0.126 4.126 15 C -0.097 4.097 16 C -0.075 4.075 17 H 0.081 0.919 18 S -0.139 6.139 19 C -0.081 4.081 20 C -0.140 4.140 21 C 0.089 3.911 22 N -0.493 5.493 23 C 0.091 3.909 24 C -0.121 4.121 25 C 0.144 3.856 26 H 0.299 0.701 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.108 0.892 30 H 0.055 0.945 31 H 0.076 0.924 32 H 0.093 0.907 33 H 0.146 0.854 34 H 0.180 0.820 35 H 0.190 0.810 36 H 0.165 0.835 37 H 0.089 0.911 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.961 -10.560 -2.111 20.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.140 4.140 3 Si 0.803 3.197 4 H -0.175 1.175 5 H -0.187 1.187 6 H -0.174 1.174 7 C -1.171 5.171 8 H 0.134 0.866 9 S 2.819 3.181 10 O -1.030 7.030 11 O -1.027 7.027 12 N -0.841 5.841 13 C -0.013 4.013 14 C -0.167 4.167 15 C -0.137 4.137 16 C -0.205 4.205 17 H 0.100 0.900 18 S 0.096 5.904 19 C -0.201 4.201 20 C -0.162 4.162 21 C -0.069 4.069 22 N -0.202 5.202 23 C -0.067 4.067 24 C -0.144 4.144 25 C 0.017 3.983 26 H 0.109 0.891 27 H 0.105 0.895 28 H 0.093 0.907 29 H 0.126 0.874 30 H 0.074 0.926 31 H 0.094 0.906 32 H 0.111 0.889 33 H 0.164 0.836 34 H 0.197 0.803 35 H 0.206 0.794 36 H 0.182 0.818 37 H 0.107 0.893 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 17.075 -11.070 -2.880 20.552 hybrid contribution 0.052 1.924 0.659 2.035 sum 17.127 -9.145 -2.221 19.542 Atomic orbital electron populations 1.69981 1.08729 1.32403 1.41361 1.25967 0.95320 1.05192 0.87555 0.85234 0.78909 0.74833 0.80706 1.17458 1.18679 1.17410 1.30915 1.06878 1.12633 1.66709 0.86596 1.00086 0.72773 0.73709 0.71501 1.93301 1.74482 1.88282 1.46892 1.93298 1.74306 1.88274 1.46820 1.57751 1.61014 1.53727 1.11593 1.21593 0.95313 1.00179 0.84177 1.21949 0.94034 1.01455 0.99245 1.21763 1.00525 1.00161 0.91216 1.23781 0.98263 1.02319 0.96184 0.90025 1.85484 0.98725 1.71481 1.34700 1.22321 0.97709 0.97879 1.02147 1.22819 0.97784 0.97047 0.98569 1.23144 0.89514 0.98931 0.95264 1.67784 1.40411 1.03336 1.08696 1.23335 0.94211 0.93794 0.95394 1.22835 0.94052 1.00452 0.97031 1.21010 0.90983 1.00764 0.85523 0.89068 0.89460 0.90659 0.87393 0.92567 0.90557 0.88881 0.83626 0.80327 0.79363 0.81753 0.89256 0.90502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -53.21 13.19 21.45 0.28 -52.93 16 2 C 0.07 4.02 5.46 84.65 0.46 4.49 16 3 Si 0.99 40.95 29.54 68.60 2.03 42.98 16 4 H -0.25 -9.81 7.11 99.48 0.71 -9.10 16 5 H -0.26 -10.27 7.11 99.48 0.71 -9.57 16 6 H -0.25 -9.77 7.11 99.48 0.71 -9.06 16 7 C -1.04 -56.62 9.74 67.73 0.66 -55.96 16 8 H 0.12 5.71 7.81 -2.91 -0.02 5.69 16 9 S 2.72 145.68 4.97 -56.49 -0.28 145.40 16 10 O -1.04 -61.99 16.73 -128.00 -2.14 -64.13 16 11 O -1.04 -61.31 16.74 -128.00 -2.14 -63.45 16 12 N -1.00 -39.21 3.29 -513.06 -1.69 -40.90 16 13 C 0.11 3.48 6.37 86.36 0.55 4.03 16 14 C -0.13 -2.98 6.08 30.67 0.19 -2.79 16 15 C -0.10 -2.05 5.09 30.62 0.16 -1.90 16 16 C -0.08 -2.03 2.76 30.67 0.08 -1.94 16 17 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 18 S -0.14 -3.30 21.17 -56.49 -1.20 -4.49 16 19 C -0.08 -1.68 5.27 22.90 0.12 -1.56 16 20 C -0.14 -2.85 9.90 22.50 0.22 -2.63 16 21 C 0.09 1.67 11.17 84.57 0.94 2.61 16 22 N -0.49 -9.80 10.36 -196.18 -2.03 -11.83 16 23 C 0.09 1.43 11.17 84.57 0.94 2.37 16 24 C -0.12 -1.97 9.32 22.50 0.21 -1.76 16 25 C 0.14 4.82 5.67 86.36 0.49 5.31 16 26 H 0.30 16.04 8.31 -92.71 -0.77 15.27 16 27 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.07 2.63 7.13 -2.38 -0.02 2.61 16 29 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.06 1.50 8.14 -2.39 -0.02 1.48 16 31 H 0.08 1.40 7.13 -2.39 -0.02 1.38 16 32 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 33 H 0.15 2.84 8.06 -2.91 -0.02 2.81 16 34 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 35 H 0.19 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.16 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.08 2.93 7.12 -2.39 -0.02 2.91 16 Total: -1.00 -76.95 343.92 -1.07 -78.02 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: 1.07 Total: 21.07 kcal Atomic # 6 Polarization: -54.77 SS G_CDS: 5.03 Total: -49.73 kcal Atomic # 7 Polarization: -102.22 SS G_CDS: -3.44 Total: -105.66 kcal Atomic # 8 Polarization: -123.30 SS G_CDS: -4.28 Total: -127.58 kcal Atomic # 14 Polarization: 40.95 SS G_CDS: 2.03 Total: 42.98 kcal Atomic # 16 Polarization: 142.38 SS G_CDS: -1.48 Total: 140.90 kcal Total: -76.95 -1.07 -78.02 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192960984.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.619 kcal (2) G-P(sol) polarization free energy of solvation -76.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.023 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds