Wall clock time and date at job start Tue Mar 31 2020 14:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86805 * 119.99890 * 2 1 4 4 H 1.48498 * 109.46952 * 269.99694 * 3 2 1 5 5 H 1.48503 * 109.47112 * 29.99833 * 3 2 1 6 6 H 1.48503 * 109.46823 * 149.99951 * 3 2 1 7 7 C 1.37874 * 120.00142 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99837 * 0.02562 * 7 2 1 9 9 S 1.76206 * 120.00054 * 180.02562 * 7 2 1 10 10 O 1.42100 * 106.39830 * 293.53999 * 9 7 2 11 11 O 1.42094 * 106.40244 * 66.46293 * 9 7 2 12 12 N 1.65605 * 107.21501 * 180.02562 * 9 7 2 13 13 C 1.46923 * 120.62717 * 269.71794 * 12 9 7 14 14 C 1.53628 * 108.54177 * 126.37644 * 13 12 9 15 15 C 1.53038 * 109.24433 * 54.85035 * 14 13 12 16 16 S 1.81397 * 109.46195 * 178.49465 * 15 14 13 17 17 C 1.76204 * 102.99970 * 292.80974 * 16 15 14 18 18 C 1.39549 * 120.86809 * 275.18243 * 17 16 15 19 19 C 1.37867 * 119.05452 * 179.75018 * 18 17 16 20 20 N 1.32010 * 120.85352 * 0.53163 * 19 18 17 21 21 C 1.32019 * 121.91933 * 359.71608 * 20 19 18 22 22 C 1.37857 * 120.85073 * 0.02613 * 21 20 19 23 23 C 1.53041 * 109.53832 * 298.51373 * 15 14 13 24 24 C 1.46931 * 120.62901 * 90.00233 * 12 9 7 25 25 H 0.97001 * 120.00138 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.58563 * 246.20336 * 13 12 9 27 27 H 1.08991 * 109.59101 * 6.63021 * 13 12 9 28 28 H 1.09003 * 109.62721 * 294.86356 * 14 13 12 29 29 H 1.08995 * 109.43491 * 174.72362 * 14 13 12 30 30 H 1.09004 * 109.45203 * 58.52626 * 15 14 13 31 31 H 1.07999 * 120.47505 * 359.97438 * 18 17 16 32 32 H 1.08008 * 119.57447 * 180.25229 * 19 18 17 33 33 H 1.08006 * 119.57322 * 179.97438 * 21 20 19 34 34 H 1.07998 * 120.47146 * 179.97438 * 22 21 20 35 35 H 1.08999 * 109.50311 * 301.41356 * 23 15 14 36 36 H 1.09001 * 109.49595 * 181.31454 * 23 15 14 37 37 H 1.08994 * 109.58351 * 353.36952 * 24 12 9 38 38 H 1.09001 * 109.58374 * 113.65446 * 24 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1294 0.0005 9 16 3.7666 -1.1940 0.0012 10 8 4.1682 -0.6498 -1.2485 11 8 4.1673 -0.6493 1.2510 12 7 4.2567 -2.7758 0.0011 13 6 4.4837 -3.4892 1.2652 14 6 3.6571 -4.7841 1.2507 15 6 4.0095 -5.5935 0.0006 16 16 3.0694 -7.1448 0.0001 17 6 3.7520 -8.0223 1.3671 18 6 4.9091 -8.7885 1.2204 19 6 5.4138 -9.4556 2.3163 20 7 4.8113 -9.3845 3.4887 21 6 3.7125 -8.6748 3.6670 22 6 3.1465 -7.9740 2.6234 23 6 3.6576 -4.7837 -1.2495 24 6 4.4788 -3.4906 -1.2633 25 1 -0.4850 0.8400 -0.0004 26 1 5.5423 -3.7294 1.3643 27 1 4.1694 -2.8628 2.0999 28 1 2.5948 -4.5403 1.2387 29 1 3.8863 -5.3706 2.1404 30 1 5.0767 -5.8155 0.0008 31 1 5.4043 -8.8550 0.2629 32 1 6.3112 -10.0477 2.2132 33 1 3.2505 -8.6435 4.6428 34 1 2.2473 -7.3957 2.7760 35 1 2.5953 -4.5399 -1.2379 36 1 3.8871 -5.3699 -2.1393 37 1 4.1612 -2.8649 -2.0974 38 1 5.5374 -3.7286 -1.3674 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001192963546.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:45:59 Heat of formation + Delta-G solvation = -43.015490 kcal Electronic energy + Delta-G solvation = -23578.976386 eV Core-core repulsion = 20060.381435 eV Total energy + Delta-G solvation = -3518.594951 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.070 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.20471 -38.17038 -35.77665 -34.49781 -33.07786 -32.83041 -32.13684 -31.61250 -30.89157 -26.41965 -24.53372 -23.97716 -23.76176 -23.09942 -20.49904 -18.67506 -18.19525 -17.64533 -16.87770 -16.53026 -16.10228 -15.68211 -15.26460 -15.21494 -14.48555 -14.34796 -14.18268 -14.03329 -13.90279 -13.60964 -13.44752 -13.17926 -12.87916 -12.31626 -12.11675 -11.99531 -11.58409 -11.42186 -11.14564 -11.03099 -10.91479 -10.81829 -10.61879 -10.52290 -10.41235 -9.89100 -9.80281 -9.53404 -9.49492 -9.23884 -9.14152 -8.38044 -7.92626 -6.82976 -5.36965 0.51789 0.81473 1.49018 1.93234 2.42421 3.04454 3.14733 3.23736 3.48371 3.92198 4.07336 4.12959 4.48304 4.55704 4.66672 4.67465 4.72687 4.80337 5.09547 5.17366 5.21214 5.31255 5.42643 5.45055 5.46269 5.48131 5.68803 5.72413 5.73434 5.76833 5.89017 6.00009 6.10984 6.22752 6.29548 6.38107 6.54801 7.26085 7.45741 7.60007 8.19234 8.68030 10.29274 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.023346 B = 0.003361 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.079861 B = 8328.628141 C = 8450.397462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.822 5.822 2 C 0.154 3.846 3 Si 0.799 3.201 4 H -0.246 1.246 5 H -0.255 1.255 6 H -0.220 1.220 7 C -1.014 5.014 8 H 0.122 0.878 9 S 2.674 3.326 10 O -1.008 7.008 11 O -1.006 7.006 12 N -1.002 6.002 13 C 0.131 3.869 14 C -0.130 4.130 15 C -0.051 4.051 16 S -0.149 6.149 17 C -0.066 4.066 18 C -0.131 4.131 19 C 0.092 3.908 20 N -0.473 5.473 21 C 0.094 3.906 22 C -0.125 4.125 23 C -0.117 4.117 24 C 0.134 3.866 25 H 0.281 0.719 26 H 0.060 0.940 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.142 0.858 32 H 0.159 0.841 33 H 0.161 0.839 34 H 0.146 0.854 35 H 0.085 0.915 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.817 -16.333 2.013 18.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.066 4.066 3 Si 0.619 3.381 4 H -0.170 1.170 5 H -0.179 1.179 6 H -0.142 1.142 7 C -1.149 5.149 8 H 0.140 0.860 9 S 2.777 3.223 10 O -0.998 6.998 11 O -0.996 6.996 12 N -0.837 5.837 13 C 0.003 3.997 14 C -0.171 4.171 15 C -0.180 4.180 16 S 0.088 5.912 17 C -0.186 4.186 18 C -0.154 4.154 19 C -0.066 4.066 20 N -0.182 5.182 21 C -0.065 4.065 22 C -0.147 4.147 23 C -0.157 4.157 24 C 0.006 3.994 25 H 0.091 0.909 26 H 0.078 0.922 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.086 0.914 30 H 0.107 0.893 31 H 0.160 0.840 32 H 0.176 0.824 33 H 0.178 0.822 34 H 0.164 0.836 35 H 0.104 0.896 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 7.753 -16.320 1.973 18.175 hybrid contribution 0.061 1.074 0.160 1.088 sum 7.814 -15.246 2.133 17.264 Atomic orbital electron populations 1.69986 1.06563 1.29028 1.39522 1.24422 0.94761 0.98735 0.88666 0.87902 0.83620 0.84697 0.81861 1.17006 1.17862 1.14228 1.30513 1.15554 1.02123 1.66678 0.86026 1.01497 0.77349 0.70200 0.73226 1.93400 1.85360 1.75726 1.45345 1.93454 1.85392 1.75582 1.45194 1.57768 1.84379 1.31488 1.10079 1.21332 0.98683 0.93007 0.86654 1.22366 1.02839 0.96312 0.95541 1.23380 1.01044 0.93293 1.00237 1.85665 1.53264 1.17102 1.35163 1.22277 0.97984 1.00570 0.97764 1.22624 0.95516 0.96418 1.00810 1.22809 0.99017 0.96998 0.87822 1.67731 1.08758 1.16607 1.25140 1.22857 0.91850 0.92506 0.99239 1.22683 1.00759 0.99024 0.92268 1.21808 1.02790 0.95914 0.95208 1.21242 0.98840 0.92659 0.86682 0.90900 0.92194 0.88447 0.89342 0.91449 0.89339 0.84025 0.82367 0.82180 0.83613 0.89646 0.90126 0.88194 0.91929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.36 13.96 55.43 0.77 -22.59 16 2 C 0.15 4.34 5.47 -17.82 -0.10 4.24 16 3 Si 0.80 20.26 26.54 -169.99 -4.51 15.75 16 4 H -0.25 -6.11 7.11 56.52 0.40 -5.71 16 5 H -0.25 -5.94 7.11 56.52 0.40 -5.54 16 6 H -0.22 -5.68 5.61 56.52 0.32 -5.36 16 7 C -1.01 -27.48 10.29 30.60 0.31 -27.17 16 8 H 0.12 3.32 8.06 -52.48 -0.42 2.90 16 9 S 2.67 64.74 4.19 -107.50 -0.45 64.29 16 10 O -1.01 -26.00 15.54 -57.17 -0.89 -26.89 16 11 O -1.01 -26.15 14.73 -57.17 -0.84 -26.99 16 12 N -1.00 -18.41 3.28 -113.27 -0.37 -18.78 16 13 C 0.13 2.04 6.41 -3.49 -0.02 2.02 16 14 C -0.13 -1.74 5.30 -26.39 -0.14 -1.88 16 15 C -0.05 -0.62 2.57 -26.69 -0.07 -0.69 16 16 S -0.15 -1.75 21.16 -107.50 -2.27 -4.02 16 17 C -0.07 -0.71 5.27 -38.61 -0.20 -0.91 16 18 C -0.13 -1.21 9.90 -39.23 -0.39 -1.60 16 19 C 0.09 0.83 11.17 -17.61 -0.20 0.63 16 20 N -0.47 -5.02 10.36 -13.36 -0.14 -5.16 16 21 C 0.09 0.89 11.17 -17.61 -0.20 0.69 16 22 C -0.12 -1.25 9.32 -39.23 -0.37 -1.61 16 23 C -0.12 -1.52 5.37 -26.61 -0.14 -1.67 16 24 C 0.13 2.03 6.38 -3.71 -0.02 2.00 16 25 H 0.28 7.25 8.31 -40.82 -0.34 6.91 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.10 1.63 7.12 -51.93 -0.37 1.26 16 28 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 29 H 0.07 0.79 7.13 -51.93 -0.37 0.42 16 30 H 0.09 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 32 H 0.16 0.98 8.06 -52.48 -0.42 0.55 16 33 H 0.16 1.10 8.06 -52.48 -0.42 0.68 16 34 H 0.15 1.32 8.06 -52.49 -0.42 0.89 16 35 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 37 H 0.10 1.62 7.12 -51.93 -0.37 1.25 16 38 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 337.01 15.07 5.08 5.08 Total: -1.00 -32.73 337.01 -10.14 -42.86 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.98 Total: 2.39 kcal Atomic # 6 Polarization: -24.41 SS G_CDS: -1.53 Total: -25.94 kcal Atomic # 7 Polarization: -46.79 SS G_CDS: 0.26 Total: -46.53 kcal Atomic # 8 Polarization: -52.14 SS G_CDS: -1.73 Total: -53.87 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -4.51 Total: 15.75 kcal Atomic # 16 Polarization: 62.99 SS G_CDS: -2.73 Total: 60.26 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -32.73 -10.14 -42.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192963546.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.153 kcal (2) G-P(sol) polarization free energy of solvation -32.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds