Wall clock time and date at job start Tue Mar 31 2020 15:48:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00035 * 2 1 4 4 H 1.48502 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47128 * 299.99527 * 3 2 1 6 6 H 1.48497 * 109.47312 * 59.99468 * 3 2 1 7 7 C 1.38812 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99710 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00299 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00320 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47366 * 180.02562 * 10 9 7 12 12 C 1.53044 * 109.46241 * 185.00236 * 11 10 9 13 13 C 1.53197 * 109.31411 * 178.61374 * 12 11 10 14 14 N 1.46920 * 108.77220 * 54.63684 * 13 12 11 15 15 C 1.34776 * 120.63239 * 126.37166 * 14 13 12 16 16 O 1.21720 * 120.00344 * 185.64242 * 15 14 13 17 17 C 1.46446 * 119.99859 * 5.63570 * 15 14 13 18 18 S 1.75835 * 125.45924 * 41.30831 * 17 15 14 19 19 C 1.70610 * 91.58208 * 180.20283 * 18 17 15 20 20 C 1.33773 * 111.00137 * 359.80862 * 19 18 17 21 21 C 1.36790 * 125.46142 * 221.15803 * 17 15 14 22 22 Cl 1.73595 * 123.38128 * 0.02562 * 21 17 15 23 23 C 1.46927 * 118.74190 * 306.63730 * 14 13 12 24 24 C 1.52764 * 109.00554 * 53.31398 * 23 14 13 25 25 H 0.97001 * 120.00191 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99494 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47182 * 60.00382 * 10 9 7 28 28 H 1.09000 * 109.47151 * 300.00796 * 10 9 7 29 29 H 1.09002 * 109.45255 * 304.96605 * 11 10 9 30 30 H 1.09003 * 109.49640 * 58.66097 * 12 11 10 31 31 H 1.09001 * 109.52172 * 298.58155 * 12 11 10 32 32 H 1.08997 * 109.58601 * 294.84879 * 13 12 11 33 33 H 1.09004 * 109.70223 * 174.49117 * 13 12 11 34 34 H 1.08003 * 124.49536 * 179.82753 * 19 18 17 35 35 H 1.08003 * 122.45067 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.59128 * 173.14400 * 23 14 13 37 37 H 1.08997 * 109.58673 * 293.57942 * 23 14 13 38 38 H 1.08996 * 109.56941 * 185.55526 * 24 23 14 39 39 H 1.09005 * 109.35999 * 65.49439 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 6 1.8251 -6.1414 0.1281 13 6 0.8246 -7.3010 0.1632 14 7 -0.0418 -7.2140 -1.0201 15 6 -0.1833 -8.2691 -1.8467 16 8 -0.8206 -8.1538 -2.8773 17 6 0.4298 -9.5544 -1.5049 18 16 0.4603 -10.2758 0.0984 19 6 1.3219 -11.6316 -0.4764 20 6 1.5561 -11.5294 -1.7895 21 6 1.0681 -10.3875 -2.3823 22 17 1.2509 -10.0358 -4.0724 23 6 -0.7464 -5.9530 -1.2887 24 6 0.2673 -4.8103 -1.3045 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 0.0016 27 1 2.6853 -3.7142 0.8912 28 1 2.6841 -3.7149 -0.8888 29 1 0.3805 -4.7127 0.8448 30 1 2.4105 -6.1379 1.0475 31 1 2.4909 -6.2610 -0.7267 32 1 0.2179 -7.2329 1.0662 33 1 1.3613 -8.2498 0.1542 34 1 1.6361 -12.4622 0.1383 35 1 2.0897 -12.2874 -2.3437 36 1 -1.2441 -6.0115 -2.2566 37 1 -1.4838 -5.7728 -0.5065 38 1 -0.2561 -3.8594 -1.4047 39 1 0.9474 -4.9422 -2.1460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205356657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:01 Heat of formation + Delta-G solvation = 3.654340 kcal Electronic energy + Delta-G solvation = -23145.323670 eV Core-core repulsion = 19626.708768 eV Total energy + Delta-G solvation = -3518.614902 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -40.34815 -38.50873 -37.47990 -36.34796 -34.98270 -32.89757 -31.47772 -30.58644 -29.75881 -26.84757 -25.30900 -23.86599 -23.23688 -22.03821 -21.03036 -19.87555 -19.49467 -18.26916 -17.07063 -16.60095 -16.45614 -15.44817 -15.29980 -14.79566 -14.38228 -14.02543 -13.92813 -13.88516 -13.70943 -13.55806 -13.41629 -12.94157 -12.80016 -12.45949 -12.20739 -11.86793 -11.74381 -11.55686 -11.20260 -11.09681 -10.99007 -10.84581 -10.48906 -10.37158 -10.18988 -10.08988 -9.95537 -9.66372 -9.25094 -8.87053 -8.79608 -8.67756 -6.90678 -5.76197 -3.04348 0.06352 0.73777 1.30837 1.85314 2.12191 2.66714 2.99539 3.43743 3.49483 3.51640 4.20137 4.57127 4.58327 4.70530 4.72290 4.94994 5.03323 5.20008 5.23104 5.34412 5.42705 5.49692 5.54543 5.58475 5.61290 5.77781 5.91100 5.97864 6.09075 6.15819 6.28441 6.35603 6.50095 6.67953 6.79560 6.91709 7.23361 7.71295 7.96741 8.43113 9.54312 10.12482 10.46991 11.46834 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.002621 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.200548 B =10678.927094 C =11024.035722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.159 3.841 11 C -0.094 4.094 12 C -0.124 4.124 13 C 0.096 3.904 14 N -0.600 5.600 15 C 0.587 3.413 16 O -0.515 6.515 17 C -0.257 4.257 18 S 0.259 5.741 19 C -0.237 4.237 20 C -0.139 4.139 21 C 0.008 3.992 22 Cl -0.022 7.022 23 C 0.113 3.887 24 C -0.125 4.125 25 H 0.254 0.746 26 H 0.384 0.616 27 H 0.018 0.982 28 H 0.018 0.982 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.177 0.823 35 H 0.154 0.846 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.090 0.910 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.829 -27.218 1.020 27.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.211 4.211 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.369 4.369 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.031 3.969 11 C -0.113 4.113 12 C -0.163 4.163 13 C -0.027 4.027 14 N -0.334 5.334 15 C 0.373 3.627 16 O -0.392 6.392 17 C -0.379 4.379 18 S 0.526 5.474 19 C -0.375 4.375 20 C -0.170 4.170 21 C -0.034 4.034 22 Cl 0.007 6.993 23 C -0.008 4.008 24 C -0.163 4.163 25 H 0.064 0.936 26 H 0.218 0.782 27 H 0.036 0.964 28 H 0.036 0.964 29 H 0.091 0.909 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.093 0.907 33 H 0.100 0.900 34 H 0.195 0.805 35 H 0.171 0.829 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.108 0.892 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.089 -26.585 1.744 26.664 hybrid contribution 0.913 0.390 -1.455 1.761 sum 2.001 -26.195 0.289 26.273 Atomic orbital electron populations 1.69664 1.05075 1.25514 1.57990 1.24732 0.95532 0.97667 1.03132 0.86125 0.78780 0.84177 0.77172 1.20597 1.21891 1.21896 1.19274 0.91048 0.84212 1.42359 0.91223 1.42380 1.05846 0.99975 1.89436 1.20655 0.93126 0.85386 0.97725 1.21316 0.97875 0.94206 0.97897 1.21893 0.97532 0.93960 1.02925 1.22093 0.92934 1.00015 0.87688 1.48016 1.46617 1.12741 1.25982 1.16805 0.80399 0.82026 0.83513 1.90864 1.40860 1.83549 1.23881 1.24572 1.12561 1.02368 0.98394 1.83361 1.50212 1.08849 1.04984 1.25312 1.06811 1.05672 0.99699 1.19738 1.04557 0.98323 0.94422 1.20288 1.00583 0.94826 0.87660 1.98408 1.95891 1.94550 1.10484 1.21695 0.94649 0.81615 1.02870 1.21856 0.98122 0.98290 0.98017 0.93583 0.78242 0.96373 0.96439 0.90856 0.90331 0.91387 0.90654 0.90028 0.80530 0.82886 0.88898 0.91068 0.89165 0.91745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.10 13.06 55.49 0.72 -27.38 16 2 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 3 Si 0.91 22.45 29.55 -169.99 -5.02 17.43 16 4 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 6 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 7 C -0.24 -6.64 9.99 -15.06 -0.15 -6.79 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.22 5.32 -59.91 -0.32 -18.54 16 10 C 0.16 3.10 5.65 -4.05 -0.02 3.08 16 11 C -0.09 -1.43 2.19 -90.58 -0.20 -1.62 16 12 C -0.12 -1.47 5.36 -26.61 -0.14 -1.62 16 13 C 0.10 0.99 5.64 -3.71 -0.02 0.97 16 14 N -0.60 -7.68 2.98 -174.66 -0.52 -8.20 16 15 C 0.59 8.26 7.32 -12.96 -0.09 8.17 16 16 O -0.51 -8.90 15.65 5.17 0.08 -8.82 16 17 C -0.26 -2.93 5.37 -36.80 -0.20 -3.13 16 18 S 0.26 1.90 20.09 -107.50 -2.16 -0.26 16 19 C -0.24 -1.47 10.92 29.17 0.32 -1.15 16 20 C -0.14 -1.10 10.06 -41.38 -0.42 -1.51 16 21 C 0.01 0.09 6.38 -40.34 -0.26 -0.17 16 22 Cl -0.02 -0.27 28.08 -51.86 -1.46 -1.73 16 23 C 0.11 1.55 6.41 -3.93 -0.03 1.52 16 24 C -0.12 -1.93 5.23 -26.83 -0.14 -2.07 16 25 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 26 H 0.38 9.94 6.84 -40.82 -0.28 9.66 16 27 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.02 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 33 H 0.08 0.72 4.54 -37.94 -0.17 0.55 16 34 H 0.18 0.56 8.06 -52.48 -0.42 0.14 16 35 H 0.15 0.90 8.06 -52.48 -0.42 0.48 16 36 H 0.09 1.37 6.99 -51.93 -0.36 1.00 16 37 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 1.60 7.15 -51.93 -0.37 1.23 16 39 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 LS Contribution 345.00 15.07 5.20 5.20 Total: -1.00 -32.95 345.00 -9.88 -42.83 By element: Atomic # 1 Polarization: 9.26 SS G_CDS: -4.96 Total: 4.30 kcal Atomic # 6 Polarization: -3.39 SS G_CDS: -1.44 Total: -4.84 kcal Atomic # 7 Polarization: -54.01 SS G_CDS: -0.11 Total: -54.12 kcal Atomic # 8 Polarization: -8.90 SS G_CDS: 0.08 Total: -8.82 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Atomic # 16 Polarization: 1.90 SS G_CDS: -2.16 Total: -0.26 kcal Atomic # 17 Polarization: -0.27 SS G_CDS: -1.46 Total: -1.73 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -32.95 -9.88 -42.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205356657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.480 kcal (2) G-P(sol) polarization free energy of solvation -32.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.825 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds