Wall clock time and date at job start Tue Mar 31 2020 15:48:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86793 * 120.00035 * 2 1 4 4 H 1.48502 * 109.47117 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47128 * 299.99527 * 3 2 1 6 6 H 1.48497 * 109.47312 * 59.99468 * 3 2 1 7 7 C 1.38812 * 119.99784 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99710 * 180.02562 * 7 2 1 9 9 N 1.36941 * 120.00299 * 359.97438 * 7 2 1 10 10 C 1.46493 * 120.00320 * 179.97438 * 9 7 2 11 11 C 1.52992 * 109.47366 * 180.02562 * 10 9 7 12 12 C 1.53044 * 109.46241 * 185.00236 * 11 10 9 13 13 C 1.53197 * 109.31411 * 178.61374 * 12 11 10 14 14 N 1.46920 * 108.77220 * 54.63684 * 13 12 11 15 15 C 1.34776 * 120.63239 * 126.37166 * 14 13 12 16 16 O 1.21720 * 120.00344 * 185.64242 * 15 14 13 17 17 C 1.46446 * 119.99859 * 5.63570 * 15 14 13 18 18 S 1.75835 * 125.45924 * 41.30831 * 17 15 14 19 19 C 1.70610 * 91.58208 * 180.20283 * 18 17 15 20 20 C 1.33773 * 111.00137 * 359.80862 * 19 18 17 21 21 C 1.36790 * 125.46142 * 221.15803 * 17 15 14 22 22 Cl 1.73595 * 123.38128 * 0.02562 * 21 17 15 23 23 C 1.46927 * 118.74190 * 306.63730 * 14 13 12 24 24 C 1.52764 * 109.00554 * 53.31398 * 23 14 13 25 25 H 0.97001 * 120.00191 * 0.02562 * 1 2 3 26 26 H 0.97002 * 119.99494 * 0.02562 * 9 7 2 27 27 H 1.09002 * 109.47182 * 60.00382 * 10 9 7 28 28 H 1.09000 * 109.47151 * 300.00796 * 10 9 7 29 29 H 1.09002 * 109.45255 * 304.96605 * 11 10 9 30 30 H 1.09003 * 109.49640 * 58.66097 * 12 11 10 31 31 H 1.09001 * 109.52172 * 298.58155 * 12 11 10 32 32 H 1.08997 * 109.58601 * 294.84879 * 13 12 11 33 33 H 1.09004 * 109.70223 * 174.49117 * 13 12 11 34 34 H 1.08003 * 124.49536 * 179.82753 * 19 18 17 35 35 H 1.08003 * 122.45067 * 179.97438 * 20 19 18 36 36 H 1.08997 * 109.59128 * 173.14400 * 23 14 13 37 37 H 1.08997 * 109.58673 * 293.57942 * 23 14 13 38 38 H 1.08996 * 109.56941 * 185.55526 * 24 23 14 39 39 H 1.09005 * 109.35999 * 65.49439 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 -0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2022 0.0005 8 1 3.0903 -1.2022 0.0010 9 7 1.3256 -2.3881 0.0016 10 6 2.0580 -3.6568 0.0016 11 6 1.0638 -4.8197 0.0022 12 6 1.8251 -6.1414 0.1281 13 6 0.8246 -7.3010 0.1632 14 7 -0.0418 -7.2140 -1.0201 15 6 -0.1833 -8.2691 -1.8467 16 8 -0.8206 -8.1538 -2.8773 17 6 0.4298 -9.5544 -1.5049 18 16 0.4603 -10.2758 0.0984 19 6 1.3219 -11.6316 -0.4764 20 6 1.5561 -11.5294 -1.7895 21 6 1.0681 -10.3875 -2.3823 22 17 1.2509 -10.0358 -4.0724 23 6 -0.7464 -5.9530 -1.2887 24 6 0.2673 -4.8103 -1.3045 25 1 -0.4850 0.8400 -0.0004 26 1 0.3556 -2.3881 0.0016 27 1 2.6853 -3.7142 0.8912 28 1 2.6841 -3.7149 -0.8888 29 1 0.3805 -4.7127 0.8448 30 1 2.4105 -6.1379 1.0475 31 1 2.4909 -6.2610 -0.7267 32 1 0.2179 -7.2329 1.0662 33 1 1.3613 -8.2498 0.1542 34 1 1.6361 -12.4622 0.1383 35 1 2.0897 -12.2874 -2.3437 36 1 -1.2441 -6.0115 -2.2566 37 1 -1.4838 -5.7728 -0.5065 38 1 -0.2561 -3.8594 -1.4047 39 1 0.9474 -4.9422 -2.1460 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205356657.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:00 Heat of formation + Delta-G solvation = -16.868103 kcal Electronic energy + Delta-G solvation = -23146.213590 eV Core-core repulsion = 19626.708768 eV Total energy + Delta-G solvation = -3519.504822 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.37584 -39.37750 -38.55221 -37.13781 -36.58963 -34.53006 -32.57628 -32.25505 -30.67421 -28.27990 -26.22975 -25.45943 -24.28761 -23.44911 -22.12851 -20.95482 -20.27227 -19.41049 -18.88737 -17.50925 -17.32804 -16.70457 -16.38621 -16.16832 -15.69382 -15.42164 -15.31738 -14.82487 -14.75926 -14.52867 -14.46758 -14.19910 -13.97897 -13.61650 -13.51681 -13.20780 -12.93671 -12.78255 -12.54412 -12.28446 -12.21605 -12.10740 -11.95890 -11.89308 -11.68331 -11.47038 -11.41335 -11.11762 -10.92255 -9.99974 -9.70217 -9.41573 -8.97533 -7.94729 -5.22632 -0.63435 0.05304 0.73990 1.16768 1.37569 1.47186 1.48017 1.57904 1.68665 2.03785 2.56339 3.36789 3.39110 3.70511 3.83566 3.84842 4.01581 4.05112 4.14414 4.25683 4.32156 4.39810 4.57437 4.67861 4.69993 4.72739 4.84379 4.94108 4.96501 4.98602 5.01725 5.08015 5.14826 5.26754 5.47614 5.50662 5.54626 6.24073 6.28398 6.94813 7.34764 8.11867 8.34877 9.28951 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.024024 B = 0.002621 C = 0.002539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.200548 B =10678.927094 C =11024.035722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.968 5.968 2 C -0.076 4.076 3 Si 0.971 3.029 4 H -0.267 1.267 5 H -0.295 1.295 6 H -0.291 1.291 7 C -0.244 4.244 8 H 0.073 0.927 9 N -0.744 5.744 10 C 0.157 3.843 11 C -0.083 4.083 12 C -0.117 4.117 13 C 0.096 3.904 14 N -0.600 5.600 15 C 0.583 3.417 16 O -0.561 6.561 17 C -0.302 4.302 18 S 0.314 5.686 19 C -0.212 4.212 20 C -0.155 4.155 21 C 0.001 3.999 22 Cl -0.048 7.048 23 C 0.121 3.879 24 C -0.116 4.116 25 H 0.251 0.749 26 H 0.375 0.625 27 H 0.027 0.973 28 H 0.010 0.990 29 H 0.077 0.923 30 H 0.103 0.897 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.102 0.898 34 H 0.217 0.783 35 H 0.172 0.828 36 H 0.076 0.924 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.237 -29.581 3.334 29.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.619 5.619 2 C -0.268 4.268 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.223 1.223 6 H -0.219 1.219 7 C -0.375 4.375 8 H 0.091 0.909 9 N -0.387 5.387 10 C 0.031 3.969 11 C -0.102 4.102 12 C -0.156 4.156 13 C -0.026 4.026 14 N -0.333 5.333 15 C 0.371 3.629 16 O -0.441 6.441 17 C -0.423 4.423 18 S 0.581 5.419 19 C -0.350 4.350 20 C -0.185 4.185 21 C -0.042 4.042 22 Cl -0.019 7.019 23 C -0.002 4.002 24 C -0.155 4.155 25 H 0.060 0.940 26 H 0.208 0.792 27 H 0.045 0.955 28 H 0.028 0.972 29 H 0.095 0.905 30 H 0.122 0.878 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.233 0.767 35 H 0.189 0.811 36 H 0.095 0.905 37 H 0.105 0.895 38 H 0.080 0.920 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.544 -28.981 4.088 29.378 hybrid contribution 0.518 1.021 -2.115 2.405 sum 3.062 -27.960 1.973 28.196 Atomic orbital electron populations 1.69813 1.06517 1.25951 1.59644 1.25539 0.96411 1.01007 1.03842 0.85099 0.78237 0.79939 0.76649 1.19121 1.22269 1.21851 1.19661 0.91448 0.85508 1.40930 0.90876 1.42592 1.05704 1.01128 1.89269 1.20830 0.93857 0.84878 0.97383 1.21208 0.97110 0.94435 0.97442 1.21850 0.97580 0.92276 1.03871 1.22307 0.92693 1.00218 0.87407 1.48084 1.46634 1.11944 1.26599 1.17228 0.79751 0.83115 0.82807 1.90827 1.42976 1.84524 1.25806 1.24469 1.14594 1.01880 1.01394 1.83131 1.49011 1.08275 1.01492 1.25814 1.04143 1.05786 0.99226 1.19888 1.05433 0.97872 0.95298 1.20652 1.01086 0.95938 0.86518 1.98395 1.96008 1.94799 1.12699 1.21495 0.94319 0.81643 1.02694 1.21700 0.98084 0.97760 0.97911 0.94033 0.79227 0.95523 0.97246 0.90484 0.87840 0.92176 0.88258 0.87983 0.76659 0.81101 0.90545 0.89523 0.92004 0.93348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.38 13.06 21.65 0.28 -59.10 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.91 16 3 Si 0.97 46.44 29.55 68.60 2.03 48.47 16 4 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 5 H -0.30 -14.19 7.11 99.48 0.71 -13.49 16 6 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 7 C -0.24 -13.67 9.99 84.03 0.84 -12.83 16 8 H 0.07 3.97 7.83 -2.91 -0.02 3.95 16 9 N -0.74 -37.53 5.32 -343.47 -1.83 -39.36 16 10 C 0.16 6.10 5.65 86.38 0.49 6.58 16 11 C -0.08 -2.46 2.19 -10.77 -0.02 -2.48 16 12 C -0.12 -2.51 5.36 30.67 0.16 -2.35 16 13 C 0.10 1.72 5.64 86.37 0.49 2.21 16 14 N -0.60 -14.92 2.98 -824.70 -2.46 -17.38 16 15 C 0.58 16.41 7.32 86.38 0.63 17.04 16 16 O -0.56 -20.26 15.65 -4.41 -0.07 -20.32 16 17 C -0.30 -6.45 5.37 24.07 0.13 -6.32 16 18 S 0.31 3.42 20.09 -56.49 -1.13 2.28 16 19 C -0.21 -1.66 10.92 66.80 0.73 -0.93 16 20 C -0.16 -2.00 10.06 21.10 0.21 -1.78 16 21 C 0.00 0.03 6.38 21.78 0.14 0.17 16 22 Cl -0.05 -1.18 28.08 -2.72 -0.08 -1.26 16 23 C 0.12 3.36 6.41 86.22 0.55 3.92 16 24 C -0.12 -3.72 5.23 30.53 0.16 -3.56 16 25 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 26 H 0.38 19.97 6.84 -92.71 -0.63 19.34 16 27 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 30 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.10 1.44 4.54 -11.28 -0.05 1.39 16 34 H 0.22 0.01 8.06 -2.91 -0.02 -0.01 16 35 H 0.17 1.51 8.06 -2.91 -0.02 1.49 16 36 H 0.08 2.40 6.99 -2.39 -0.02 2.38 16 37 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 38 H 0.06 2.32 7.15 -2.39 -0.02 2.31 16 39 H 0.05 1.67 8.14 -2.38 -0.02 1.65 16 Total: -1.00 -74.11 345.00 2.13 -71.98 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.41 Total: 18.94 kcal Atomic # 6 Polarization: -9.24 SS G_CDS: 4.98 Total: -4.26 kcal Atomic # 7 Polarization: -111.83 SS G_CDS: -4.00 Total: -115.83 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.07 Total: -20.32 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Atomic # 16 Polarization: 3.42 SS G_CDS: -1.13 Total: 2.28 kcal Atomic # 17 Polarization: -1.18 SS G_CDS: -0.08 Total: -1.26 kcal Total: -74.11 2.13 -71.98 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205356657.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.109 kcal (2) G-P(sol) polarization free energy of solvation -74.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds