Wall clock time and date at job start Tue Mar 31 2020 15:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99728 * 2 1 4 4 H 1.48506 * 109.46666 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47143 * 299.99211 * 3 2 1 6 6 H 1.48502 * 109.47412 * 59.99787 * 3 2 1 7 7 C 1.38809 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99834 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00102 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47211 * 180.02562 * 10 9 7 12 12 C 1.53041 * 109.45894 * 184.99833 * 11 10 9 13 13 C 1.53189 * 109.31218 * 178.61204 * 12 11 10 14 14 N 1.46925 * 108.77330 * 54.63864 * 13 12 11 15 15 C 1.34780 * 120.63216 * 126.36468 * 14 13 12 16 16 O 1.21637 * 119.99937 * 4.06568 * 15 14 13 17 17 C 1.47161 * 120.00255 * 184.05960 * 15 14 13 18 18 C 1.36053 * 123.46259 * 308.32404 * 17 15 14 19 19 S 1.70446 * 110.82439 * 180.27204 * 18 17 15 20 20 C 1.75506 * 92.46142 * 359.71878 * 19 18 17 21 21 C 1.32841 * 110.57405 * 359.97438 * 20 19 18 22 22 Cl 1.73602 * 123.46607 * 179.97438 * 21 20 19 23 23 C 1.46921 * 118.73734 * 306.64249 * 14 13 12 24 24 C 1.52758 * 109.01183 * 53.31123 * 23 14 13 25 25 H 0.97005 * 120.00053 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46836 * 59.99535 * 10 9 7 28 28 H 1.09001 * 109.46957 * 300.00330 * 10 9 7 29 29 H 1.08993 * 109.44613 * 304.96523 * 11 10 9 30 30 H 1.09004 * 109.49768 * 58.66089 * 12 11 10 31 31 H 1.09005 * 109.52512 * 298.58230 * 12 11 10 32 32 H 1.08994 * 109.58736 * 294.84836 * 13 12 11 33 33 H 1.09003 * 109.70139 * 174.48799 * 13 12 11 34 34 H 1.07998 * 124.58928 * 359.96999 * 18 17 15 35 35 H 1.07991 * 124.70915 * 179.97438 * 20 19 18 36 36 H 1.09008 * 109.58756 * 173.14765 * 23 14 13 37 37 H 1.09006 * 109.58435 * 293.56671 * 23 14 13 38 38 H 1.09006 * 109.56608 * 185.55640 * 24 23 14 39 39 H 1.08999 * 109.36141 * 65.49633 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.0638 -4.8197 0.0031 12 6 1.8250 -6.1413 0.1300 13 6 0.8246 -7.3008 0.1650 14 7 -0.0410 -7.2144 -1.0191 15 6 -0.1818 -8.2699 -1.8453 16 8 0.3512 -9.3293 -1.5749 17 6 -0.9805 -8.1407 -3.0746 18 6 -2.2512 -7.6550 -3.0960 19 16 -2.8728 -7.6539 -4.6831 20 6 -1.3882 -8.3151 -5.3459 21 6 -0.4940 -8.5114 -4.3834 22 17 1.0927 -9.1559 -4.6677 23 6 -0.7453 -5.9535 -1.2887 24 6 0.2683 -4.8108 -1.3043 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3881 0.0023 27 1 2.6848 -3.7137 0.8928 28 1 2.6847 -3.7153 -0.8872 29 1 0.3800 -4.7122 0.8450 30 1 2.4098 -6.1374 1.0499 31 1 2.4915 -6.2613 -0.7242 32 1 0.2173 -7.2324 1.0674 33 1 1.3613 -8.2496 0.1567 34 1 -2.7944 -7.3204 -2.2247 35 1 -1.2246 -8.5322 -6.3911 36 1 -1.2424 -6.0124 -2.2570 37 1 -1.4834 -5.7730 -0.5071 38 1 -0.2551 -3.8599 -1.4052 39 1 0.9490 -4.9430 -2.1452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001205500176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:39 Heat of formation + Delta-G solvation = 1.133524 kcal Electronic energy + Delta-G solvation = -23287.708138 eV Core-core repulsion = 19768.983925 eV Total energy + Delta-G solvation = -3518.724213 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.49016 -38.16293 -37.30471 -36.20056 -34.93517 -32.89990 -31.41952 -30.35527 -29.89715 -26.96399 -25.25943 -23.68127 -23.21991 -22.11551 -20.90067 -19.96033 -19.21303 -17.97262 -17.38017 -16.96955 -16.10297 -15.35913 -15.07161 -14.78382 -14.30435 -14.04286 -13.96154 -13.81236 -13.59853 -13.56730 -13.33623 -12.89280 -12.73639 -12.42006 -12.23362 -11.83628 -11.74811 -11.68359 -11.14922 -11.07107 -11.00455 -10.86340 -10.41762 -10.34669 -10.29916 -10.00179 -9.92790 -9.66211 -9.25672 -8.88492 -8.76714 -8.60715 -6.92271 -5.78320 -3.06105 0.39599 0.88775 1.31174 1.60878 2.26322 2.62115 3.05449 3.42239 3.48382 3.50246 4.25327 4.44258 4.57984 4.83493 4.92046 5.02031 5.03284 5.11094 5.17185 5.34883 5.43726 5.49024 5.50524 5.55450 5.63694 5.78861 5.94127 5.96740 6.08296 6.18886 6.27446 6.42521 6.46535 6.62029 6.79893 6.91680 7.29818 7.70046 8.04053 8.41207 9.52547 10.10550 10.45412 11.44789 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.002967 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.077018 B = 9436.146884 C =10098.011883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.281 1.281 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.237 4.237 8 H 0.070 0.930 9 N -0.732 5.732 10 C 0.158 3.842 11 C -0.094 4.094 12 C -0.126 4.126 13 C 0.115 3.885 14 N -0.598 5.598 15 C 0.579 3.421 16 O -0.528 6.528 17 C -0.136 4.136 18 C -0.212 4.212 19 S 0.231 5.769 20 C -0.232 4.232 21 C -0.013 4.013 22 Cl -0.028 7.028 23 C 0.096 3.904 24 C -0.125 4.125 25 H 0.254 0.746 26 H 0.383 0.617 27 H 0.019 0.981 28 H 0.018 0.982 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.091 0.909 34 H 0.181 0.819 35 H 0.180 0.820 36 H 0.087 0.913 37 H 0.072 0.928 38 H 0.089 0.911 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.694 -19.081 -8.985 22.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.210 4.210 3 Si 0.737 3.263 4 H -0.206 1.206 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.368 4.368 8 H 0.088 0.912 9 N -0.376 5.376 10 C 0.030 3.970 11 C -0.112 4.112 12 C -0.165 4.165 13 C -0.007 4.007 14 N -0.331 5.331 15 C 0.364 3.636 16 O -0.405 6.405 17 C -0.154 4.154 18 C -0.350 4.350 19 S 0.496 5.504 20 C -0.368 4.368 21 C -0.052 4.052 22 Cl 0.001 6.999 23 C -0.026 4.026 24 C -0.163 4.163 25 H 0.064 0.936 26 H 0.217 0.783 27 H 0.037 0.963 28 H 0.036 0.964 29 H 0.090 0.910 30 H 0.095 0.905 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.109 0.891 34 H 0.198 0.802 35 H 0.197 0.803 36 H 0.105 0.895 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.495 -19.153 -9.486 22.650 hybrid contribution 1.634 0.670 0.641 1.879 sum -5.861 -18.483 -8.845 21.312 Atomic orbital electron populations 1.69664 1.05077 1.25480 1.58135 1.24717 0.95526 0.97635 1.03147 0.86131 0.78827 0.84162 0.77174 1.20582 1.21882 1.21893 1.19285 0.91083 0.84226 1.42231 0.91217 1.42377 1.05799 0.99995 1.89449 1.20670 0.93164 0.85348 0.97770 1.21305 0.97868 0.94444 0.97632 1.21920 0.97739 0.94010 1.02829 1.21659 0.92404 1.00218 0.86433 1.48032 1.46725 1.12550 1.25764 1.17491 0.80213 0.83833 0.82052 1.90806 1.48381 1.27131 1.74210 1.19896 0.95391 1.06457 0.93705 1.25658 0.99105 1.05526 1.04701 1.83189 1.12874 1.58773 0.95575 1.25433 0.97672 1.09797 1.03939 1.20589 0.89709 1.02846 0.92037 1.98398 1.21361 1.84280 1.95867 1.22036 0.95322 0.83127 1.02117 1.21845 0.98053 0.98096 0.98296 0.93621 0.78304 0.96345 0.96412 0.90954 0.90492 0.91509 0.91305 0.89094 0.80163 0.80314 0.89526 0.90975 0.89255 0.91763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -27.71 13.06 55.49 0.72 -26.99 16 2 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 3 Si 0.91 22.25 29.55 -169.99 -5.02 17.23 16 4 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 7 C -0.24 -6.58 9.99 -15.06 -0.15 -6.73 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.05 5.32 -59.91 -0.32 -18.37 16 10 C 0.16 3.11 5.65 -4.04 -0.02 3.09 16 11 C -0.09 -1.43 2.19 -90.58 -0.20 -1.63 16 12 C -0.13 -1.64 5.36 -26.61 -0.14 -1.78 16 13 C 0.11 1.41 6.43 -3.71 -0.02 1.39 16 14 N -0.60 -7.65 2.98 -174.40 -0.52 -8.17 16 15 C 0.58 8.14 7.09 -12.64 -0.09 8.05 16 16 O -0.53 -8.94 16.22 5.24 0.09 -8.86 16 17 C -0.14 -1.61 5.03 -104.61 -0.53 -2.14 16 18 C -0.21 -1.88 8.40 29.95 0.25 -1.63 16 19 S 0.23 1.60 23.02 -107.50 -2.47 -0.88 16 20 C -0.23 -1.96 11.00 28.87 0.32 -1.65 16 21 C -0.01 -0.15 6.49 -38.99 -0.25 -0.40 16 22 Cl -0.03 -0.34 28.53 -51.86 -1.48 -1.82 16 23 C 0.10 1.13 5.67 -3.94 -0.02 1.11 16 24 C -0.12 -1.81 5.23 -26.83 -0.14 -1.95 16 25 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 26 H 0.38 9.76 6.85 -40.82 -0.28 9.48 16 27 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 30 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 31 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 33 H 0.09 1.17 7.02 -51.93 -0.36 0.81 16 34 H 0.18 1.28 7.49 -52.49 -0.39 0.89 16 35 H 0.18 1.10 8.06 -52.49 -0.42 0.67 16 36 H 0.09 0.91 4.66 -51.92 -0.24 0.67 16 37 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 1.47 7.15 -51.93 -0.37 1.10 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 LS Contribution 346.55 15.07 5.22 5.22 Total: -1.00 -32.53 346.55 -9.88 -42.41 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -5.00 Total: 5.01 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: -1.10 Total: -4.79 kcal Atomic # 7 Polarization: -53.42 SS G_CDS: -0.11 Total: -53.53 kcal Atomic # 8 Polarization: -8.94 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 1.60 SS G_CDS: -2.47 Total: -0.88 kcal Atomic # 17 Polarization: -0.34 SS G_CDS: -1.48 Total: -1.82 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -32.53 -9.88 -42.41 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205500176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.547 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds