Wall clock time and date at job start Tue Mar 31 2020 15:34:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86799 * 119.99728 * 2 1 4 4 H 1.48506 * 109.46666 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47143 * 299.99211 * 3 2 1 6 6 H 1.48502 * 109.47412 * 59.99787 * 3 2 1 7 7 C 1.38809 * 119.99723 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99834 * 180.02562 * 7 2 1 9 9 N 1.36933 * 120.00179 * 359.97438 * 7 2 1 10 10 C 1.46503 * 120.00102 * 180.02562 * 9 7 2 11 11 C 1.52999 * 109.47211 * 180.02562 * 10 9 7 12 12 C 1.53041 * 109.45894 * 184.99833 * 11 10 9 13 13 C 1.53189 * 109.31218 * 178.61204 * 12 11 10 14 14 N 1.46925 * 108.77330 * 54.63864 * 13 12 11 15 15 C 1.34780 * 120.63216 * 126.36468 * 14 13 12 16 16 O 1.21637 * 119.99937 * 4.06568 * 15 14 13 17 17 C 1.47161 * 120.00255 * 184.05960 * 15 14 13 18 18 C 1.36053 * 123.46259 * 308.32404 * 17 15 14 19 19 S 1.70446 * 110.82439 * 180.27204 * 18 17 15 20 20 C 1.75506 * 92.46142 * 359.71878 * 19 18 17 21 21 C 1.32841 * 110.57405 * 359.97438 * 20 19 18 22 22 Cl 1.73602 * 123.46607 * 179.97438 * 21 20 19 23 23 C 1.46921 * 118.73734 * 306.64249 * 14 13 12 24 24 C 1.52758 * 109.01183 * 53.31123 * 23 14 13 25 25 H 0.97005 * 120.00053 * 0.02562 * 1 2 3 26 26 H 0.97001 * 120.00490 * 359.97438 * 9 7 2 27 27 H 1.09004 * 109.46836 * 59.99535 * 10 9 7 28 28 H 1.09001 * 109.46957 * 300.00330 * 10 9 7 29 29 H 1.08993 * 109.44613 * 304.96523 * 11 10 9 30 30 H 1.09004 * 109.49768 * 58.66089 * 12 11 10 31 31 H 1.09005 * 109.52512 * 298.58230 * 12 11 10 32 32 H 1.08994 * 109.58736 * 294.84836 * 13 12 11 33 33 H 1.09003 * 109.70139 * 174.48799 * 13 12 11 34 34 H 1.07998 * 124.58928 * 359.96999 * 18 17 15 35 35 H 1.07991 * 124.70915 * 179.97438 * 20 19 18 36 36 H 1.09008 * 109.58756 * 173.14765 * 23 14 13 37 37 H 1.09006 * 109.58435 * 293.56671 * 23 14 13 38 38 H 1.09006 * 109.56608 * 185.55640 * 24 23 14 39 39 H 1.08999 * 109.36141 * 65.49633 * 24 23 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8914 2.3965 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0902 -1.2022 0.0010 9 7 1.3256 -2.3880 0.0016 10 6 2.0580 -3.6568 0.0027 11 6 1.0638 -4.8197 0.0031 12 6 1.8250 -6.1413 0.1300 13 6 0.8246 -7.3008 0.1650 14 7 -0.0410 -7.2144 -1.0191 15 6 -0.1818 -8.2699 -1.8453 16 8 0.3512 -9.3293 -1.5749 17 6 -0.9805 -8.1407 -3.0746 18 6 -2.2512 -7.6550 -3.0960 19 16 -2.8728 -7.6539 -4.6831 20 6 -1.3882 -8.3151 -5.3459 21 6 -0.4940 -8.5114 -4.3834 22 17 1.0927 -9.1559 -4.6677 23 6 -0.7453 -5.9535 -1.2887 24 6 0.2683 -4.8108 -1.3043 25 1 -0.4850 0.8401 -0.0004 26 1 0.3556 -2.3881 0.0023 27 1 2.6848 -3.7137 0.8928 28 1 2.6847 -3.7153 -0.8872 29 1 0.3800 -4.7122 0.8450 30 1 2.4098 -6.1374 1.0499 31 1 2.4915 -6.2613 -0.7242 32 1 0.2173 -7.2324 1.0674 33 1 1.3613 -8.2496 0.1567 34 1 -2.7944 -7.3204 -2.2247 35 1 -1.2246 -8.5322 -6.3911 36 1 -1.2424 -6.0124 -2.2570 37 1 -1.4834 -5.7730 -0.5071 38 1 -0.2551 -3.8599 -1.4052 39 1 0.9490 -4.9430 -2.1452 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001205500176.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:38 Heat of formation + Delta-G solvation = -18.524609 kcal Electronic energy + Delta-G solvation = -23288.560579 eV Core-core repulsion = 19768.983925 eV Total energy + Delta-G solvation = -3519.576653 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49371 -39.19848 -38.29647 -37.02993 -36.54335 -34.48198 -32.64149 -31.96299 -30.74179 -28.36484 -26.39786 -25.18208 -24.33383 -23.42779 -22.06928 -21.03316 -20.12117 -19.15576 -18.75092 -18.15018 -17.08220 -16.69570 -16.33195 -15.94014 -15.67253 -15.42330 -15.32493 -14.85183 -14.72283 -14.55807 -14.42483 -14.03244 -13.81246 -13.80275 -13.48285 -13.12313 -12.93213 -12.77496 -12.53980 -12.48975 -12.19648 -12.10373 -11.96133 -11.87822 -11.68729 -11.51630 -11.33762 -10.99004 -10.90993 -9.99022 -9.73248 -9.35211 -8.96947 -7.94252 -5.21811 -0.29867 0.23392 0.63143 0.79587 1.48336 1.48658 1.51347 1.58549 1.65082 2.09940 2.56881 3.39449 3.46059 3.65710 3.75367 3.79066 3.90780 4.10405 4.27286 4.29074 4.34075 4.38551 4.44082 4.57305 4.69909 4.70898 4.79258 4.82445 4.86634 4.96001 5.02710 5.07409 5.16120 5.27709 5.47869 5.53892 5.55192 6.28578 6.29355 7.02487 7.35984 8.11473 8.36643 9.29200 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.002967 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.077018 B = 9436.146884 C =10098.011883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.070 4.070 3 Si 0.969 3.031 4 H -0.270 1.270 5 H -0.292 1.292 6 H -0.292 1.292 7 C -0.246 4.246 8 H 0.070 0.930 9 N -0.741 5.741 10 C 0.157 3.843 11 C -0.083 4.083 12 C -0.116 4.116 13 C 0.116 3.884 14 N -0.598 5.598 15 C 0.577 3.423 16 O -0.566 6.566 17 C -0.170 4.170 18 C -0.212 4.212 19 S 0.309 5.691 20 C -0.230 4.230 21 C -0.042 4.042 22 Cl -0.051 7.051 23 C 0.104 3.896 24 C -0.118 4.118 25 H 0.252 0.748 26 H 0.377 0.623 27 H 0.019 0.981 28 H 0.011 0.989 29 H 0.074 0.926 30 H 0.090 0.910 31 H 0.056 0.944 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.199 0.801 35 H 0.201 0.799 36 H 0.102 0.898 37 H 0.091 0.909 38 H 0.069 0.931 39 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.957 -19.088 -9.501 22.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.263 4.263 3 Si 0.798 3.202 4 H -0.195 1.195 5 H -0.219 1.219 6 H -0.219 1.219 7 C -0.378 4.378 8 H 0.088 0.912 9 N -0.384 5.384 10 C 0.031 3.969 11 C -0.102 4.102 12 C -0.155 4.155 13 C -0.006 4.006 14 N -0.330 5.330 15 C 0.364 3.636 16 O -0.446 6.446 17 C -0.188 4.188 18 C -0.350 4.350 19 S 0.575 5.425 20 C -0.367 4.367 21 C -0.081 4.081 22 Cl -0.022 7.022 23 C -0.017 4.017 24 C -0.157 4.157 25 H 0.060 0.940 26 H 0.210 0.790 27 H 0.037 0.963 28 H 0.029 0.971 29 H 0.093 0.907 30 H 0.109 0.891 31 H 0.075 0.925 32 H 0.105 0.895 33 H 0.103 0.897 34 H 0.216 0.784 35 H 0.218 0.782 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.087 0.913 39 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.742 -19.171 -10.005 23.325 hybrid contribution 1.961 0.671 0.747 2.204 sum -6.781 -18.500 -9.258 21.770 Atomic orbital electron populations 1.69797 1.06353 1.25967 1.59480 1.25474 0.96403 1.00749 1.03680 0.85140 0.78152 0.80114 0.76753 1.19469 1.21917 1.21945 1.19633 0.91377 0.85582 1.41216 0.91200 1.42533 1.05698 1.00899 1.89279 1.20802 0.93896 0.85090 0.97139 1.21187 0.97090 0.93729 0.98170 1.21824 0.97641 0.92889 1.03126 1.21662 0.92465 0.99329 0.87114 1.48102 1.46584 1.12591 1.25675 1.17864 0.79863 0.83351 0.82546 1.90773 1.50182 1.28536 1.75151 1.19793 0.96549 1.09530 0.92973 1.25991 0.98196 1.03916 1.06942 1.83011 1.10375 1.56104 0.93025 1.25835 0.97938 1.08204 1.04678 1.20735 0.89577 1.04989 0.92769 1.98379 1.23129 1.84790 1.95916 1.22034 0.94541 0.81412 1.03761 1.21725 0.98255 0.98384 0.97318 0.93952 0.79021 0.96350 0.97122 0.90739 0.89148 0.92483 0.89546 0.89717 0.78359 0.78236 0.87990 0.89130 0.91256 0.93000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -57.49 13.06 21.65 0.28 -57.20 16 2 C -0.07 -3.99 5.50 84.86 0.47 -3.52 16 3 Si 0.97 45.66 29.55 68.60 2.03 47.68 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 5 H -0.29 -13.69 7.11 99.48 0.71 -12.99 16 6 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 7 C -0.25 -13.67 9.99 84.03 0.84 -12.83 16 8 H 0.07 3.80 7.83 -2.91 -0.02 3.77 16 9 N -0.74 -36.75 5.32 -343.45 -1.83 -38.58 16 10 C 0.16 6.18 5.65 86.38 0.49 6.67 16 11 C -0.08 -2.48 2.19 -10.77 -0.02 -2.51 16 12 C -0.12 -2.92 5.36 30.67 0.16 -2.76 16 13 C 0.12 2.74 6.43 86.36 0.55 3.30 16 14 N -0.60 -14.70 2.98 -823.91 -2.45 -17.15 16 15 C 0.58 15.99 7.09 86.59 0.61 16.61 16 16 O -0.57 -19.46 16.22 -4.15 -0.07 -19.53 16 17 C -0.17 -3.84 5.03 -19.86 -0.10 -3.94 16 18 C -0.21 -3.23 8.40 67.31 0.57 -2.67 16 19 S 0.31 3.23 23.02 -56.49 -1.30 1.93 16 20 C -0.23 -3.39 11.00 66.64 0.73 -2.66 16 21 C -0.04 -0.92 6.49 22.68 0.15 -0.78 16 22 Cl -0.05 -1.26 28.53 -2.72 -0.08 -1.34 16 23 C 0.10 2.29 5.67 86.22 0.49 2.78 16 24 C -0.12 -3.39 5.23 30.53 0.16 -3.23 16 25 H 0.25 14.49 8.31 -92.70 -0.77 13.71 16 26 H 0.38 19.41 6.85 -92.71 -0.63 18.77 16 27 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 30 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 32 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.08 2.16 7.02 -2.39 -0.02 2.14 16 34 H 0.20 2.16 7.49 -2.91 -0.02 2.14 16 35 H 0.20 1.93 8.06 -2.92 -0.02 1.91 16 36 H 0.10 1.93 4.66 -2.38 -0.01 1.92 16 37 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 38 H 0.07 2.28 7.15 -2.38 -0.02 2.27 16 39 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 Total: -1.00 -70.71 346.55 2.13 -68.58 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.45 Total: 21.15 kcal Atomic # 6 Polarization: -10.64 SS G_CDS: 5.10 Total: -5.54 kcal Atomic # 7 Polarization: -108.93 SS G_CDS: -4.00 Total: -112.93 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.07 Total: -19.53 kcal Atomic # 14 Polarization: 45.66 SS G_CDS: 2.03 Total: 47.68 kcal Atomic # 16 Polarization: 3.23 SS G_CDS: -1.30 Total: 1.93 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.08 Total: -1.34 kcal Total: -70.71 2.13 -68.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001205500176.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.056 kcal (2) G-P(sol) polarization free energy of solvation -70.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds