Wall clock time and date at job start Tue Mar 31 2020 15:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86793 * 120.00462 * 2 1 4 4 H 1.48496 * 109.47394 * 270.00159 * 3 2 1 5 5 H 1.48501 * 109.47123 * 30.00158 * 3 2 1 6 6 H 1.48507 * 109.47454 * 150.00075 * 3 2 1 7 7 C 1.38817 * 119.99427 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00139 * 0.02562 * 7 2 1 9 9 N 1.36947 * 119.99754 * 179.97438 * 7 2 1 10 10 C 1.46494 * 119.99745 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.53040 * 109.46225 * 174.99976 * 11 10 9 13 13 C 1.53193 * 109.31606 * 181.38881 * 12 11 10 14 14 N 1.46929 * 108.89018 * 305.28952 * 13 12 11 15 15 C 1.34775 * 120.63532 * 233.68205 * 14 13 12 16 16 O 1.21641 * 119.99596 * 356.34079 * 15 14 13 17 17 C 1.47178 * 120.00207 * 176.33829 * 15 14 13 18 18 C 1.35977 * 123.45703 * 46.63657 * 17 15 14 19 19 S 1.70438 * 110.84629 * 179.97438 * 18 17 15 20 20 C 1.75507 * 92.45690 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 124.71935 * 180.02562 * 20 19 18 22 22 C 1.32893 * 110.55841 * 359.74899 * 20 19 18 23 23 C 1.47207 * 118.55119 * 53.53988 * 14 13 12 24 24 C 1.53042 * 109.46322 * 295.06717 * 11 10 9 25 25 H 0.97005 * 120.00004 * 359.97438 * 1 2 3 26 26 H 0.96989 * 119.99648 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.47562 * 59.99772 * 10 9 7 28 28 H 1.08999 * 109.47310 * 299.99633 * 10 9 7 29 29 H 1.09001 * 109.46039 * 55.02399 * 11 10 9 30 30 H 1.08995 * 109.49894 * 61.43450 * 12 11 10 31 31 H 1.09011 * 109.52450 * 301.35178 * 12 11 10 32 32 H 1.08997 * 109.58804 * 65.14719 * 13 12 11 33 33 H 1.09003 * 109.58839 * 185.43504 * 13 12 11 34 34 H 1.07997 * 124.57426 * 359.92377 * 18 17 15 35 35 H 1.07998 * 123.47333 * 180.21371 * 22 20 19 36 36 H 1.09000 * 109.53358 * 186.67035 * 23 14 13 37 37 H 1.08997 * 109.67856 * 66.37057 * 23 14 13 38 38 H 1.08998 * 109.49278 * 298.56822 * 24 11 10 39 39 H 1.09003 * 109.49375 * 58.65617 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0101 -1.2023 0.0005 8 1 1.4700 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1119 -2.4711 0.0000 11 6 5.6161 -2.1916 0.0000 12 6 6.3800 -3.5118 0.1258 13 6 7.8845 -3.2254 0.1604 14 7 8.2453 -2.4332 -1.0233 15 6 9.2299 -2.8407 -1.8485 16 8 9.8739 -3.8375 -1.5810 17 6 9.5259 -2.0799 -3.0731 18 6 9.6511 -0.7263 -3.1028 19 16 9.9947 -0.1834 -4.6815 20 6 9.9725 -1.8147 -5.3285 21 17 10.2494 -2.2220 -6.9932 22 6 9.7202 -2.6953 -4.3656 23 6 7.5060 -1.1882 -1.2888 24 6 6.0058 -1.4974 -1.3070 25 1 -0.4850 0.8401 0.0004 26 1 3.8645 -0.3624 -0.0004 27 1 3.8482 -3.0429 -0.8897 28 1 3.8489 -3.0424 0.8902 29 1 5.8656 -1.5461 0.8421 30 1 6.1503 -4.1479 -0.7290 31 1 6.0848 -4.0174 1.0453 32 1 8.1293 -2.6657 1.0631 33 1 8.4358 -4.1657 0.1526 34 1 9.5460 -0.0820 -2.2424 35 1 9.6624 -3.7606 -4.5329 36 1 7.8076 -0.7842 -2.2552 37 1 7.7196 -0.4605 -0.5059 38 1 5.7796 -2.1525 -2.1483 39 1 5.4440 -0.5687 -1.4072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001206494459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:22 Heat of formation + Delta-G solvation = 6.494379 kcal Electronic energy + Delta-G solvation = -23096.883673 eV Core-core repulsion = 19578.391924 eV Total energy + Delta-G solvation = -3518.491749 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 1.84 seconds Orbital eigenvalues (eV) -40.62190 -38.22679 -37.52608 -36.69361 -35.15698 -32.98130 -31.54830 -30.73990 -29.83339 -27.30767 -25.39829 -23.60305 -23.39542 -21.99646 -20.97221 -20.15786 -19.39320 -18.13656 -17.70338 -17.21887 -16.16153 -15.56931 -15.11760 -14.79214 -14.56836 -14.18831 -14.14903 -14.04569 -13.90972 -13.61522 -13.26553 -13.03716 -12.90787 -12.49785 -12.43210 -12.04485 -11.97006 -11.87705 -11.43940 -11.27199 -11.18216 -10.95162 -10.60946 -10.50012 -10.30310 -10.17110 -10.02866 -9.61138 -9.26603 -8.95515 -8.92654 -8.74903 -7.25599 -5.79391 -3.14831 0.25288 0.59821 1.28174 1.58016 1.71934 2.60199 2.93824 3.32404 3.33864 3.41265 4.29914 4.37142 4.55437 4.69327 4.81088 4.85319 4.90112 5.01147 5.17307 5.19336 5.31286 5.34780 5.42187 5.52618 5.60999 5.64743 5.68935 5.77811 5.85531 6.02009 6.07720 6.22847 6.30618 6.41533 6.65734 6.76660 7.15777 7.90564 7.97372 8.39732 9.18820 9.90933 10.10839 11.39275 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.003051 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.344281 B = 9175.988957 C =10268.483768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.243 4.243 8 H 0.089 0.911 9 N -0.755 5.755 10 C 0.163 3.837 11 C -0.098 4.098 12 C -0.126 4.126 13 C 0.113 3.887 14 N -0.599 5.599 15 C 0.581 3.419 16 O -0.536 6.536 17 C -0.136 4.136 18 C -0.215 4.215 19 S 0.238 5.762 20 C -0.169 4.169 21 Cl -0.009 7.009 22 C -0.073 4.073 23 C 0.092 3.908 24 C -0.127 4.127 25 H 0.259 0.741 26 H 0.360 0.640 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.079 0.921 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.182 0.818 35 H 0.160 0.840 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.424 -1.450 -8.914 26.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.210 1.210 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.373 4.373 8 H 0.107 0.893 9 N -0.401 5.401 10 C 0.035 3.965 11 C -0.117 4.117 12 C -0.164 4.164 13 C -0.009 4.009 14 N -0.331 5.331 15 C 0.367 3.633 16 O -0.414 6.414 17 C -0.154 4.154 18 C -0.353 4.353 19 S 0.503 5.497 20 C -0.312 4.312 21 Cl 0.019 6.981 22 C -0.104 4.104 23 C -0.030 4.030 24 C -0.165 4.165 25 H 0.069 0.931 26 H 0.193 0.807 27 H 0.045 0.955 28 H 0.045 0.955 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.098 0.902 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.199 0.801 35 H 0.177 0.823 36 H 0.109 0.891 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 24.790 -0.682 -9.559 26.578 hybrid contribution 0.122 -0.113 0.575 0.598 sum 24.912 -0.795 -8.985 26.494 Atomic orbital electron populations 1.69700 1.05121 1.25807 1.57643 1.24681 0.95237 0.97190 1.02144 0.86555 0.79215 0.85066 0.77743 1.21039 1.21712 1.20378 1.19073 0.80695 0.94726 1.42847 0.89272 1.42719 1.04005 1.02203 1.91185 1.20644 0.87920 0.89241 0.98658 1.21372 0.96644 0.96220 0.97497 1.21909 0.93460 0.97928 1.03132 1.21678 0.96084 0.96665 0.86431 1.48080 1.34419 1.24700 1.25914 1.17538 0.79927 0.83839 0.82014 1.90808 1.49761 1.26419 1.74425 1.19941 1.08289 0.92483 0.94652 1.25864 1.06656 0.98699 1.04047 1.83252 1.66588 1.03317 0.96575 1.25096 1.15585 0.99143 0.91409 1.98386 1.94854 1.92991 1.11831 1.21079 0.99123 1.01184 0.89059 1.22256 0.92893 0.85511 1.02358 1.21942 0.93546 1.02324 0.98681 0.93052 0.80739 0.95515 0.95483 0.90988 0.91291 0.90235 0.91263 0.88959 0.80100 0.82251 0.89116 0.90953 0.91194 0.89966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.17 13.97 55.49 0.78 -28.39 16 2 C 0.00 0.09 5.50 -17.43 -0.10 -0.01 16 3 Si 0.88 21.48 27.73 -169.99 -4.71 16.77 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.25 6.52 56.52 0.37 -5.88 16 7 C -0.24 -6.80 10.47 -15.05 -0.16 -6.96 16 8 H 0.09 2.69 8.06 -52.49 -0.42 2.26 16 9 N -0.76 -17.28 5.12 -59.91 -0.31 -17.59 16 10 C 0.16 2.98 5.65 -4.05 -0.02 2.96 16 11 C -0.10 -1.36 2.19 -90.58 -0.20 -1.55 16 12 C -0.13 -1.46 5.36 -26.61 -0.14 -1.60 16 13 C 0.11 1.25 6.41 -3.71 -0.02 1.22 16 14 N -0.60 -6.80 2.98 -173.90 -0.52 -7.31 16 15 C 0.58 7.35 7.44 -12.63 -0.09 7.26 16 16 O -0.54 -8.47 16.51 5.24 0.09 -8.38 16 17 C -0.14 -1.42 5.20 -104.63 -0.54 -1.96 16 18 C -0.21 -1.73 8.34 29.92 0.25 -1.48 16 19 S 0.24 1.71 23.02 -107.50 -2.47 -0.77 16 20 C -0.17 -1.51 7.01 28.89 0.20 -1.30 16 21 Cl -0.01 -0.08 29.27 -51.86 -1.52 -1.59 16 22 C -0.07 -0.73 10.29 -38.98 -0.40 -1.14 16 23 C 0.09 0.94 5.54 -3.56 -0.02 0.92 16 24 C -0.13 -1.63 5.25 -26.61 -0.14 -1.76 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.36 7.90 4.70 -40.82 -0.19 7.71 16 27 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.09 1.07 7.02 -51.93 -0.36 0.71 16 34 H 0.18 1.11 7.06 -52.49 -0.37 0.74 16 35 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 36 H 0.09 0.80 4.39 -51.93 -0.23 0.58 16 37 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 38 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 1.16 7.15 -51.93 -0.37 0.79 16 LS Contribution 343.90 15.07 5.18 5.18 Total: -1.00 -32.90 343.90 -9.80 -42.70 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.92 Total: 4.80 kcal Atomic # 6 Polarization: -4.02 SS G_CDS: -1.39 Total: -5.41 kcal Atomic # 7 Polarization: -53.24 SS G_CDS: -0.05 Total: -53.30 kcal Atomic # 8 Polarization: -8.47 SS G_CDS: 0.09 Total: -8.38 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.71 Total: 16.77 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.47 Total: -0.77 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -1.52 Total: -1.59 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -32.90 -9.80 -42.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206494459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.199 kcal (2) G-P(sol) polarization free energy of solvation -32.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.294 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.704 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.84 seconds