Wall clock time and date at job start Tue Mar 31 2020 15:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31613 * 1 3 3 Si 1.86793 * 120.00462 * 2 1 4 4 H 1.48496 * 109.47394 * 270.00159 * 3 2 1 5 5 H 1.48501 * 109.47123 * 30.00158 * 3 2 1 6 6 H 1.48507 * 109.47454 * 150.00075 * 3 2 1 7 7 C 1.38817 * 119.99427 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00139 * 0.02562 * 7 2 1 9 9 N 1.36947 * 119.99754 * 179.97438 * 7 2 1 10 10 C 1.46494 * 119.99745 * 180.02562 * 9 7 2 11 11 C 1.52996 * 109.47003 * 180.02562 * 10 9 7 12 12 C 1.53040 * 109.46225 * 174.99976 * 11 10 9 13 13 C 1.53193 * 109.31606 * 181.38881 * 12 11 10 14 14 N 1.46929 * 108.89018 * 305.28952 * 13 12 11 15 15 C 1.34775 * 120.63532 * 233.68205 * 14 13 12 16 16 O 1.21641 * 119.99596 * 356.34079 * 15 14 13 17 17 C 1.47178 * 120.00207 * 176.33829 * 15 14 13 18 18 C 1.35977 * 123.45703 * 46.63657 * 17 15 14 19 19 S 1.70438 * 110.84629 * 179.97438 * 18 17 15 20 20 C 1.75507 * 92.45690 * 359.97438 * 19 18 17 21 21 Cl 1.73603 * 124.71935 * 180.02562 * 20 19 18 22 22 C 1.32893 * 110.55841 * 359.74899 * 20 19 18 23 23 C 1.47207 * 118.55119 * 53.53988 * 14 13 12 24 24 C 1.53042 * 109.46322 * 295.06717 * 11 10 9 25 25 H 0.97005 * 120.00004 * 359.97438 * 1 2 3 26 26 H 0.96989 * 119.99648 * 0.02562 * 9 7 2 27 27 H 1.08996 * 109.47562 * 59.99772 * 10 9 7 28 28 H 1.08999 * 109.47310 * 299.99633 * 10 9 7 29 29 H 1.09001 * 109.46039 * 55.02399 * 11 10 9 30 30 H 1.08995 * 109.49894 * 61.43450 * 12 11 10 31 31 H 1.09011 * 109.52450 * 301.35178 * 12 11 10 32 32 H 1.08997 * 109.58804 * 65.14719 * 13 12 11 33 33 H 1.09003 * 109.58839 * 185.43504 * 13 12 11 34 34 H 1.07997 * 124.57426 * 359.92377 * 18 17 15 35 35 H 1.07998 * 123.47333 * 180.21371 * 22 20 19 36 36 H 1.09000 * 109.53358 * 186.67035 * 23 14 13 37 37 H 1.08997 * 109.67856 * 66.37057 * 23 14 13 38 38 H 1.08998 * 109.49278 * 298.56822 * 24 11 10 39 39 H 1.09003 * 109.49375 * 58.65617 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6176 0.0000 4 1 2.4978 2.0463 -1.4000 5 1 1.4478 2.6526 0.7001 6 1 3.5479 1.4400 0.7000 7 6 2.0101 -1.2023 0.0005 8 1 1.4700 -2.1375 0.0005 9 7 3.3796 -1.2023 0.0000 10 6 4.1119 -2.4711 0.0000 11 6 5.6161 -2.1916 0.0000 12 6 6.3800 -3.5118 0.1258 13 6 7.8845 -3.2254 0.1604 14 7 8.2453 -2.4332 -1.0233 15 6 9.2299 -2.8407 -1.8485 16 8 9.8739 -3.8375 -1.5810 17 6 9.5259 -2.0799 -3.0731 18 6 9.6511 -0.7263 -3.1028 19 16 9.9947 -0.1834 -4.6815 20 6 9.9725 -1.8147 -5.3285 21 17 10.2494 -2.2220 -6.9932 22 6 9.7202 -2.6953 -4.3656 23 6 7.5060 -1.1882 -1.2888 24 6 6.0058 -1.4974 -1.3070 25 1 -0.4850 0.8401 0.0004 26 1 3.8645 -0.3624 -0.0004 27 1 3.8482 -3.0429 -0.8897 28 1 3.8489 -3.0424 0.8902 29 1 5.8656 -1.5461 0.8421 30 1 6.1503 -4.1479 -0.7290 31 1 6.0848 -4.0174 1.0453 32 1 8.1293 -2.6657 1.0631 33 1 8.4358 -4.1657 0.1526 34 1 9.5460 -0.0820 -2.2424 35 1 9.6624 -3.7606 -4.5329 36 1 7.8076 -0.7842 -2.2552 37 1 7.7196 -0.4605 -0.5059 38 1 5.7796 -2.1525 -2.1483 39 1 5.4440 -0.5687 -1.4072 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001206494459.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:42:21 Heat of formation + Delta-G solvation = -13.936784 kcal Electronic energy + Delta-G solvation = -23097.769634 eV Core-core repulsion = 19578.391924 eV Total energy + Delta-G solvation = -3519.377710 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 328.075 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.52046 -39.19982 -38.34185 -37.41278 -36.68989 -34.51795 -32.91156 -32.14714 -30.59400 -28.61651 -26.42811 -24.94731 -24.36510 -23.32694 -22.14269 -21.12096 -20.25123 -19.59612 -18.86330 -18.14845 -17.04705 -16.60179 -16.43687 -16.07256 -15.81825 -15.52349 -15.08692 -14.87862 -14.84169 -14.73792 -14.46680 -14.20528 -14.01515 -13.75150 -13.58418 -13.28693 -13.06603 -12.77804 -12.64285 -12.62397 -12.18530 -12.15771 -11.87375 -11.83388 -11.69131 -11.53222 -11.40695 -11.00860 -10.93010 -9.92376 -9.79315 -9.46954 -9.28024 -8.01251 -5.35251 -0.40768 -0.01902 0.62672 0.82180 1.06234 1.38739 1.44704 1.52163 1.73598 2.09576 2.50973 3.30128 3.49251 3.57033 3.73652 3.81370 3.86263 4.06290 4.14463 4.17979 4.33595 4.39874 4.50091 4.54087 4.67008 4.71412 4.77712 4.82659 4.90943 4.92500 5.02656 5.08404 5.13103 5.24571 5.48585 5.52931 5.76935 6.22455 6.27368 6.99920 7.09962 7.85167 8.06605 9.20673 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.013918 B = 0.003051 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2011.344281 B = 9175.988957 C =10268.483768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.988 5.988 2 C -0.068 4.068 3 Si 0.959 3.041 4 H -0.273 1.273 5 H -0.298 1.298 6 H -0.244 1.244 7 C -0.238 4.238 8 H 0.050 0.950 9 N -0.754 5.754 10 C 0.159 3.841 11 C -0.087 4.087 12 C -0.117 4.117 13 C 0.115 3.885 14 N -0.597 5.597 15 C 0.580 3.420 16 O -0.578 6.578 17 C -0.163 4.163 18 C -0.204 4.204 19 S 0.296 5.704 20 C -0.182 4.182 21 Cl -0.009 7.009 22 C -0.088 4.088 23 C 0.098 3.902 24 C -0.126 4.126 25 H 0.258 0.742 26 H 0.369 0.631 27 H 0.015 0.985 28 H 0.022 0.978 29 H 0.083 0.917 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.206 0.794 35 H 0.151 0.849 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.057 0.943 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.022 0.978 -8.887 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.638 5.638 2 C -0.259 4.259 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.225 1.225 6 H -0.168 1.168 7 C -0.369 4.369 8 H 0.068 0.932 9 N -0.400 5.400 10 C 0.033 3.967 11 C -0.106 4.106 12 C -0.156 4.156 13 C -0.006 4.006 14 N -0.328 5.328 15 C 0.367 3.633 16 O -0.459 6.459 17 C -0.181 4.181 18 C -0.343 4.343 19 S 0.561 5.439 20 C -0.326 4.326 21 Cl 0.019 6.981 22 C -0.119 4.119 23 C -0.024 4.024 24 C -0.164 4.164 25 H 0.067 0.933 26 H 0.203 0.797 27 H 0.034 0.966 28 H 0.040 0.960 29 H 0.101 0.899 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.107 0.893 33 H 0.102 0.898 34 H 0.223 0.777 35 H 0.168 0.832 36 H 0.125 0.875 37 H 0.115 0.885 38 H 0.075 0.925 39 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 27.428 1.729 -9.537 29.090 hybrid contribution -0.748 -0.953 0.525 1.320 sum 26.681 0.776 -9.012 28.172 Atomic orbital electron populations 1.69909 1.07436 1.26803 1.59668 1.25612 0.96184 1.01686 1.02453 0.85353 0.78863 0.78880 0.78395 1.19913 1.22525 1.16774 1.19032 0.82995 0.93319 1.41529 0.93238 1.42656 1.02232 1.04200 1.90911 1.20793 0.90877 0.87304 0.97709 1.21263 0.93101 0.97621 0.98628 1.21826 0.93848 0.96667 1.03270 1.21673 0.94973 0.96824 0.87175 1.48155 1.33989 1.25013 1.25669 1.17852 0.79595 0.83382 0.82440 1.90780 1.51371 1.28328 1.75398 1.19763 1.11087 0.93367 0.93844 1.26197 1.04465 0.98007 1.05591 1.83118 1.64709 1.01031 0.95012 1.25269 1.15493 1.00426 0.91361 1.98385 1.94829 1.93189 1.11650 1.21070 1.00087 1.01196 0.89576 1.22337 0.90537 0.85282 1.04264 1.21900 0.95584 1.01464 0.97470 0.93346 0.79742 0.96643 0.96021 0.89893 0.92378 0.89194 0.89293 0.89820 0.77694 0.83165 0.87546 0.88458 0.92456 0.90699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.14 13.97 21.65 0.30 -62.84 16 2 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 3 Si 0.96 43.44 27.73 68.60 1.90 45.34 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 6 H -0.24 -9.57 6.52 99.48 0.65 -8.92 16 7 C -0.24 -13.46 10.47 84.03 0.88 -12.58 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 N -0.75 -33.65 5.12 -343.46 -1.76 -35.41 16 10 C 0.16 5.75 5.65 86.38 0.49 6.23 16 11 C -0.09 -2.21 2.19 -10.77 -0.02 -2.23 16 12 C -0.12 -2.54 5.36 30.67 0.16 -2.37 16 13 C 0.12 2.29 6.41 86.36 0.55 2.85 16 14 N -0.60 -12.18 2.98 -822.34 -2.45 -14.63 16 15 C 0.58 13.97 7.44 86.59 0.64 14.61 16 16 O -0.58 -18.23 16.51 -4.16 -0.07 -18.29 16 17 C -0.16 -3.13 5.20 -19.87 -0.10 -3.23 16 18 C -0.20 -2.61 8.34 67.29 0.56 -2.05 16 19 S 0.30 3.31 23.02 -56.49 -1.30 2.01 16 20 C -0.18 -2.97 7.01 66.64 0.47 -2.50 16 21 Cl -0.01 -0.14 29.27 -2.72 -0.08 -0.22 16 22 C -0.09 -1.71 10.29 22.68 0.23 -1.47 16 23 C 0.10 1.63 5.54 86.31 0.48 2.11 16 24 C -0.13 -2.91 5.25 30.67 0.16 -2.75 16 25 H 0.26 15.64 8.31 -92.70 -0.77 14.87 16 26 H 0.37 15.13 4.70 -92.72 -0.44 14.69 16 27 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 29 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 30 H 0.06 1.38 8.14 -2.39 -0.02 1.37 16 31 H 0.09 1.76 8.14 -2.38 -0.02 1.75 16 32 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 33 H 0.08 1.86 7.02 -2.39 -0.02 1.85 16 34 H 0.21 1.53 7.06 -2.91 -0.02 1.51 16 35 H 0.15 3.03 8.06 -2.91 -0.02 3.01 16 36 H 0.11 1.46 4.39 -2.39 -0.01 1.45 16 37 H 0.10 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.07 1.87 7.15 -2.39 -0.02 1.86 16 Total: -1.00 -73.42 343.90 2.10 -71.32 By element: Atomic # 1 Polarization: 19.03 SS G_CDS: 0.59 Total: 19.62 kcal Atomic # 6 Polarization: -11.86 SS G_CDS: 4.97 Total: -6.89 kcal Atomic # 7 Polarization: -108.97 SS G_CDS: -3.91 Total: -112.88 kcal Atomic # 8 Polarization: -18.23 SS G_CDS: -0.07 Total: -18.29 kcal Atomic # 14 Polarization: 43.44 SS G_CDS: 1.90 Total: 45.34 kcal Atomic # 16 Polarization: 3.31 SS G_CDS: -1.30 Total: 2.01 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.08 Total: -0.22 kcal Total: -73.42 2.10 -71.32 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001206494459.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.382 kcal (2) G-P(sol) polarization free energy of solvation -73.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds