Wall clock time and date at job start Tue Mar 31 2020 14:46:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47016 * 210.12625 * 3 2 1 5 5 N 1.46893 * 109.47209 * 174.87327 * 4 3 2 6 6 C 1.46900 * 111.00027 * 199.74901 * 5 4 3 7 7 C 1.50696 * 109.47039 * 66.04321 * 6 5 4 8 8 H 1.08001 * 120.00086 * 0.02562 * 7 6 5 9 9 C 1.37882 * 119.99927 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00133 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99998 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47204 * 90.00100 * 11 9 7 13 13 H 1.48493 * 109.47432 * 210.00170 * 11 9 7 14 14 H 1.48506 * 109.47136 * 330.00322 * 11 9 7 15 15 C 1.46901 * 111.00392 * 75.79616 * 5 4 3 16 16 C 1.53002 * 109.47287 * 199.64043 * 15 5 4 17 17 C 1.50697 * 109.47140 * 174.85715 * 16 15 5 18 18 C 1.38698 * 120.81563 * 269.71937 * 17 16 15 19 19 Cl 1.73600 * 120.45535 * 0.02562 * 18 17 16 20 20 N 1.32491 * 119.08673 * 179.79016 * 18 17 16 21 21 C 1.31781 * 120.83334 * 0.47511 * 20 18 17 22 22 N 1.31784 * 121.78226 * 359.77784 * 21 20 18 23 23 C 1.32493 * 120.83231 * 359.97396 * 22 21 20 24 24 Cl 1.73599 * 120.45675 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.47058 * 90.12177 * 3 2 1 26 26 H 1.09000 * 109.47106 * 330.12213 * 3 2 1 27 27 H 1.09000 * 109.47286 * 54.86813 * 4 3 2 28 28 H 1.09007 * 109.46961 * 294.86896 * 4 3 2 29 29 H 1.09000 * 109.47297 * 186.04277 * 6 5 4 30 30 H 1.08994 * 109.47004 * 306.04564 * 6 5 4 31 31 H 0.97003 * 120.00034 * 179.97438 * 10 9 7 32 32 H 1.08993 * 109.47316 * 79.64143 * 15 5 4 33 33 H 1.09009 * 109.46834 * 319.63732 * 15 5 4 34 34 H 1.08996 * 109.47175 * 294.86512 * 16 15 5 35 35 H 1.09006 * 109.47162 * 54.86028 * 16 15 5 36 36 H 1.08005 * 119.11195 * 179.75256 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1174 1.2486 0.7240 5 7 4.5811 1.1887 0.8320 6 6 5.0678 2.0828 1.8911 7 6 4.5888 1.5831 3.2297 8 1 3.9837 0.6904 3.2879 9 6 4.9231 2.2656 4.3802 10 7 5.6603 3.3523 4.3094 11 14 4.3287 1.6467 6.0394 12 1 5.3290 0.7053 6.6039 13 1 4.1544 2.7962 6.9631 14 1 3.0301 0.9462 5.8703 15 6 5.2173 1.5017 -0.4546 16 6 6.6520 0.9702 -0.4569 17 6 7.2626 1.1785 -1.8188 18 6 7.1586 0.2044 -2.8006 19 17 6.3190 -1.2811 -2.4809 20 7 7.7048 0.4251 -3.9874 21 6 8.3478 1.5481 -4.2366 22 7 8.4713 2.4938 -3.3272 23 6 7.9475 2.3467 -2.1191 24 17 8.1166 3.5985 -0.9283 25 1 2.9713 0.0030 -1.0277 26 1 2.9717 -0.8903 0.5119 27 1 2.6809 1.2933 1.7218 28 1 2.8306 2.1373 0.1618 29 1 6.1576 2.1010 1.8789 30 1 4.6857 3.0892 1.7211 31 1 5.8951 3.8327 5.1188 32 1 5.2298 2.5818 -0.6005 33 1 4.6546 1.0324 -1.2618 34 1 7.2387 1.5048 0.2901 35 1 6.6456 -0.0939 -0.2205 36 1 8.7859 1.6973 -5.2125 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001207331084.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:46:57 Heat of formation + Delta-G solvation = 45.278100 kcal Electronic energy + Delta-G solvation = -22702.649050 eV Core-core repulsion = 19080.255040 eV Total energy + Delta-G solvation = -3622.394010 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 328.055 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.35156 -39.13066 -38.17696 -37.95731 -37.45862 -35.32322 -34.69126 -34.55397 -32.27521 -30.35779 -28.24765 -25.75544 -25.68274 -24.79460 -23.23976 -21.40343 -19.47829 -19.23027 -18.58736 -18.29539 -16.85607 -16.63636 -16.44704 -16.12236 -15.95502 -15.36973 -15.36097 -15.03987 -14.94639 -14.31033 -14.03305 -14.01588 -13.88303 -13.45638 -13.28399 -13.17117 -12.95706 -12.85183 -12.69877 -12.52328 -12.42652 -12.20507 -12.00702 -11.82415 -11.78161 -11.42445 -11.33007 -11.12515 -10.72346 -10.51219 -10.40932 -8.99869 -8.11687 -6.18122 -0.55548 -0.51864 0.23409 0.65843 1.46046 1.47871 1.56406 1.78579 1.86607 2.30633 2.46162 2.89391 2.95423 3.01410 3.23400 3.26427 3.63197 3.66565 4.03111 4.21343 4.23762 4.28686 4.50549 4.63920 4.77710 4.85014 4.99461 5.03470 5.18898 5.23430 5.37941 5.40549 5.43206 5.76225 6.16047 6.35987 6.60401 6.62441 6.69607 6.98924 7.50882 8.98833 Molecular weight = 328.06amu Principal moments of inertia in cm(-1) A = 0.010033 B = 0.004411 C = 0.003403 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2789.991527 B = 6346.674460 C = 8226.303921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.242 3.758 3 C -0.013 4.013 4 C 0.064 3.936 5 N -0.525 5.525 6 C 0.210 3.790 7 C -0.514 4.514 8 H 0.069 0.931 9 C 0.007 3.993 10 N -0.932 5.932 11 Si 0.952 3.048 12 H -0.275 1.275 13 H -0.292 1.292 14 H -0.267 1.267 15 C 0.064 3.936 16 C -0.073 4.073 17 C -0.150 4.150 18 C 0.232 3.768 19 Cl 0.022 6.978 20 N -0.516 5.516 21 C 0.330 3.670 22 N -0.522 5.522 23 C 0.221 3.779 24 Cl 0.002 6.998 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.069 0.931 28 H 0.033 0.967 29 H 0.020 0.980 30 H -0.038 1.038 31 H 0.260 0.740 32 H 0.021 0.979 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.107 0.893 36 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.299 -6.339 -17.263 19.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.179 5.179 2 C -0.075 4.075 3 C -0.053 4.053 4 C -0.065 4.065 5 N -0.249 5.249 6 C 0.083 3.917 7 C -0.553 4.553 8 H 0.087 0.913 9 C -0.191 4.191 10 N -0.573 5.573 11 Si 0.779 3.221 12 H -0.200 1.200 13 H -0.218 1.218 14 H -0.191 1.191 15 C -0.065 4.065 16 C -0.111 4.111 17 C -0.157 4.157 18 C 0.059 3.941 19 Cl 0.051 6.949 20 N -0.233 5.233 21 C 0.044 3.956 22 N -0.239 5.239 23 C 0.049 3.951 24 Cl 0.031 6.969 25 H 0.150 0.850 26 H 0.153 0.847 27 H 0.088 0.912 28 H 0.051 0.949 29 H 0.038 0.962 30 H -0.020 1.020 31 H 0.069 0.931 32 H 0.040 0.960 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.125 0.875 36 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 5.138 -6.568 -17.787 19.644 hybrid contribution -0.250 1.044 1.918 2.198 sum 4.888 -5.524 -15.869 17.499 Atomic orbital electron populations 1.81199 1.14760 1.10742 1.11248 1.29628 0.95586 0.91252 0.91052 1.19429 0.78895 1.01765 1.05220 1.21838 0.88729 0.95251 1.00713 1.61895 1.04476 1.54023 1.04472 1.19401 0.94964 0.88390 0.88897 1.21526 1.31715 1.10468 0.91542 0.91253 1.25707 0.95607 0.95157 1.02631 1.70060 1.39061 1.18825 1.29352 0.85633 0.79001 0.77631 0.79852 1.20030 1.21784 1.19112 1.22029 0.93936 0.97935 0.92573 1.20573 0.95946 1.04951 0.89676 1.21117 1.01591 0.93322 0.99682 1.22044 0.92777 0.89810 0.89499 1.98462 1.73508 1.28881 1.94028 1.67989 1.10961 1.24292 1.20016 1.25823 0.89507 0.81231 0.99023 1.67952 1.21039 1.33820 1.01069 1.22135 0.92927 0.89536 0.90537 1.98501 1.95780 1.50844 1.51795 0.84957 0.84690 0.91237 0.94866 0.96229 1.02030 0.93087 0.96019 0.88880 0.90683 0.87471 0.72961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -16.17 18.54 20.01 0.37 -15.79 16 2 C 0.24 6.34 15.43 89.44 1.38 7.72 16 3 C -0.01 -0.27 5.75 28.79 0.17 -0.10 16 4 C 0.06 1.92 4.75 86.31 0.41 2.33 16 5 N -0.53 -17.47 4.36 -900.80 -3.92 -21.39 16 6 C 0.21 9.53 4.55 85.56 0.39 9.92 16 7 C -0.51 -25.93 8.23 25.60 0.21 -25.72 16 8 H 0.07 3.37 7.31 -2.91 -0.02 3.35 16 9 C 0.01 0.38 5.46 84.66 0.46 0.84 16 10 N -0.93 -52.95 13.29 21.45 0.28 -52.67 16 11 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 12 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 13 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 14 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 15 C 0.06 1.72 4.79 86.30 0.41 2.13 16 16 C -0.07 -1.88 4.69 29.85 0.14 -1.74 16 17 C -0.15 -3.47 5.17 -19.64 -0.10 -3.57 16 18 C 0.23 4.79 7.33 84.70 0.62 5.42 16 19 Cl 0.02 0.40 27.64 -2.72 -0.08 0.33 16 20 N -0.52 -9.92 10.43 -190.90 -1.99 -11.92 16 21 C 0.33 5.41 12.28 180.89 2.22 7.63 16 22 N -0.52 -11.34 10.43 -190.89 -1.99 -13.33 16 23 C 0.22 5.42 7.33 84.70 0.62 6.04 16 24 Cl 0.00 0.06 27.65 -2.72 -0.08 -0.02 16 25 H 0.13 1.93 6.90 -2.39 -0.02 1.91 16 26 H 0.14 2.46 8.14 -2.39 -0.02 2.44 16 27 H 0.07 2.49 6.57 -2.39 -0.02 2.48 16 28 H 0.03 0.98 8.00 -2.38 -0.02 0.96 16 29 H 0.02 0.96 6.71 -2.39 -0.02 0.95 16 30 H -0.04 -1.95 8.12 -2.39 -0.02 -1.97 16 31 H 0.26 14.18 8.31 -92.71 -0.77 13.41 16 32 H 0.02 0.65 8.00 -2.39 -0.02 0.63 16 33 H 0.09 1.94 6.56 -2.38 -0.02 1.93 16 34 H 0.07 2.30 5.84 -2.39 -0.01 2.28 16 35 H 0.11 2.57 7.02 -2.38 -0.02 2.56 16 36 H 0.25 1.72 8.06 -2.91 -0.02 1.69 16 Total: -1.00 -63.91 344.50 2.69 -61.22 By element: Atomic # 1 Polarization: -2.69 SS G_CDS: 1.13 Total: -1.56 kcal Atomic # 6 Polarization: 3.95 SS G_CDS: 6.93 Total: 10.88 kcal Atomic # 7 Polarization: -107.85 SS G_CDS: -7.25 Total: -115.10 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: 0.46 SS G_CDS: -0.15 Total: 0.31 kcal Total: -63.91 2.69 -61.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001207331084.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.499 kcal (2) G-P(sol) polarization free energy of solvation -63.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.278 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds