Wall clock time and date at job start Tue Mar 31 2020 14:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86795 * 120.00200 * 2 1 4 4 H 1.48505 * 109.47045 * 270.28100 * 3 2 1 5 5 H 1.48494 * 109.47378 * 30.28050 * 3 2 1 6 6 H 1.48500 * 109.46945 * 150.28174 * 3 2 1 7 7 C 1.38624 * 119.99546 * 180.28332 * 2 1 3 8 8 H 1.08000 * 120.00156 * 179.72500 * 7 2 1 9 9 O 1.34808 * 120.00276 * 359.71537 * 7 2 1 10 10 C 1.35779 * 117.00258 * 174.87472 * 9 7 2 11 11 C 1.38728 * 120.10186 * 5.26269 * 10 9 7 12 12 C 1.38167 * 120.00446 * 179.77055 * 11 10 9 13 13 C 1.38350 * 120.21004 * 0.50712 * 12 11 10 14 14 C 1.38182 * 120.20602 * 359.74933 * 13 12 11 15 15 C 1.38756 * 119.99425 * 359.97438 * 14 13 12 16 16 N 1.39854 * 120.11013 * 179.97438 * 15 14 13 17 17 C 1.38174 * 119.99682 * 41.53997 * 16 15 14 18 18 N 1.28841 * 124.82182 * 186.07918 * 17 16 15 19 19 C 1.34880 * 117.86614 * 179.81606 * 18 17 16 20 20 C 1.39663 * 112.90201 * 0.46549 * 19 18 17 21 21 C 1.39379 * 120.43143 * 179.72999 * 20 19 18 22 22 C 1.37715 * 120.29984 * 0.02562 * 21 20 19 23 23 C 1.38671 * 120.02442 * 359.97438 * 22 21 20 24 24 C 1.37685 * 120.53214 * 0.02562 * 23 22 21 25 25 O 1.35938 * 119.83492 * 180.02562 * 24 23 22 26 26 S 1.75802 * 124.82351 * 6.38675 * 17 16 15 27 27 H 0.97005 * 119.99318 * 359.71931 * 1 2 3 28 28 H 1.08003 * 120.00114 * 0.02562 * 11 10 9 29 29 H 1.08002 * 119.89445 * 180.27746 * 12 11 10 30 30 H 1.08001 * 119.89599 * 179.76533 * 13 12 11 31 31 H 1.08001 * 120.00390 * 179.97438 * 14 13 12 32 32 H 0.96998 * 120.00595 * 221.54345 * 16 15 14 33 33 H 1.08002 * 119.84906 * 180.02562 * 21 20 19 34 34 H 1.08008 * 119.98876 * 180.02562 * 22 21 20 35 35 H 1.07997 * 119.74088 * 180.02562 * 23 22 21 36 36 H 0.96696 * 114.00507 * 269.98421 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4914 2.0498 -1.4001 5 1 1.4504 2.6509 0.7059 6 1 3.5504 1.4383 0.6941 7 6 2.0089 -1.2006 -0.0059 8 1 3.0888 -1.2007 -0.0104 9 8 1.3348 -2.3680 -0.0059 10 6 2.0695 -3.5041 -0.1199 11 6 3.4553 -3.4394 -0.1200 12 6 4.2010 -4.5972 -0.2313 13 6 3.5703 -5.8225 -0.3536 14 6 2.1905 -5.8965 -0.3600 15 6 1.4332 -4.7397 -0.2429 16 7 0.0365 -4.8118 -0.2495 17 6 -0.6067 -5.8170 0.4469 18 7 -1.8755 -6.0385 0.4151 19 6 -2.3552 -7.0634 1.1491 20 6 -1.3586 -7.7366 1.8591 21 6 -1.6818 -8.8199 2.6743 22 6 -2.9889 -9.2385 2.7877 23 6 -3.9909 -8.5815 2.0897 24 6 -3.6915 -7.5093 1.2795 25 8 -4.6850 -6.8753 0.6021 26 16 0.1890 -6.9707 1.5083 27 1 -0.4849 0.8401 0.0041 28 1 3.9514 -2.4844 -0.0288 29 1 5.2798 -4.5452 -0.2266 30 1 4.1582 -6.7239 -0.4442 31 1 1.7015 -6.8547 -0.4560 32 1 -0.4807 -4.1562 -0.7430 33 1 -0.9037 -9.3335 3.2195 34 1 -3.2338 -10.0784 3.4211 35 1 -5.0144 -8.9133 2.1823 36 1 -4.8567 -7.2399 -0.2769 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212596340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:39 Heat of formation + Delta-G solvation = 24.876808 kcal Electronic energy + Delta-G solvation = -23977.150407 eV Core-core repulsion = 20326.055536 eV Total energy + Delta-G solvation = -3651.094872 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27345 -39.59201 -37.74322 -36.84124 -36.19855 -34.63797 -32.44973 -30.05035 -29.69739 -29.24744 -27.88338 -25.55771 -24.26735 -22.86729 -22.14228 -21.44166 -20.83330 -18.99228 -18.21951 -17.99629 -17.07804 -16.82199 -16.14600 -15.65796 -15.30842 -14.92939 -14.82530 -14.53735 -14.51053 -14.06606 -13.95434 -13.79891 -13.38147 -12.87414 -12.49137 -12.39296 -12.21414 -11.84933 -11.57904 -11.36524 -11.14340 -11.08515 -10.99248 -10.57485 -10.48557 -10.14098 -9.74604 -9.63579 -9.37891 -8.99775 -8.51237 -7.90098 -7.74659 -7.01489 -6.60189 -4.19530 0.67283 1.09269 1.20387 1.76798 1.88136 2.16190 2.66421 3.04680 3.05190 3.10666 3.18001 3.66172 3.82855 4.22283 4.30633 4.56470 4.83549 4.86488 4.97100 5.14527 5.25724 5.41069 5.49657 5.57637 5.71461 5.80073 5.95827 6.08803 6.14940 6.27675 6.32584 6.42203 6.58882 6.68386 6.84405 7.00562 7.14198 7.22820 7.52085 7.57762 7.73579 7.81542 8.15480 8.83798 9.45892 10.56148 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.003524 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.457205 B = 7942.825915 C = 9385.331486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.042 3.958 3 Si 0.943 3.057 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.396 4.396 8 H 0.095 0.905 9 O -0.168 6.168 10 C 0.144 3.856 11 C -0.215 4.215 12 C -0.076 4.076 13 C -0.188 4.188 14 C -0.098 4.098 15 C 0.055 3.945 16 N -0.598 5.598 17 C 0.389 3.611 18 N -0.547 5.547 19 C 0.118 3.882 20 C -0.201 4.201 21 C -0.065 4.065 22 C -0.120 4.120 23 C -0.127 4.127 24 C 0.130 3.870 25 O -0.485 6.485 26 S 0.065 5.935 27 H 0.273 0.727 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.121 0.879 32 H 0.428 0.572 33 H 0.127 0.873 34 H 0.133 0.867 35 H 0.135 0.865 36 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.401 -15.942 1.809 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.487 5.487 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.471 4.471 8 H 0.113 0.887 9 O -0.070 6.070 10 C 0.087 3.913 11 C -0.235 4.235 12 C -0.095 4.095 13 C -0.207 4.207 14 C -0.120 4.120 15 C -0.040 4.040 16 N -0.229 5.229 17 C 0.013 3.987 18 N -0.273 5.273 19 C -0.004 4.004 20 C -0.320 4.320 21 C -0.088 4.088 22 C -0.141 4.141 23 C -0.148 4.148 24 C 0.082 3.918 25 O -0.294 6.294 26 S 0.314 5.686 27 H 0.083 0.917 28 H 0.153 0.847 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.139 0.861 32 H 0.269 0.731 33 H 0.145 0.855 34 H 0.151 0.849 35 H 0.153 0.847 36 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -0.006 -15.076 2.283 15.248 hybrid contribution -0.556 0.756 -0.582 1.104 sum -0.561 -14.321 1.702 14.432 Atomic orbital electron populations 1.70043 1.05987 1.28114 1.44583 1.25332 0.95893 0.98961 0.96164 0.85670 0.78947 0.79782 0.78828 1.19731 1.20140 1.19062 1.21351 0.91931 0.80421 1.53435 0.88743 1.83956 1.34288 1.11382 1.77370 1.19160 0.90521 0.87028 0.94583 1.21078 0.92688 0.99517 1.10181 1.20854 0.98941 0.92124 0.97554 1.20438 0.93134 0.97433 1.09741 1.20627 0.94289 0.95892 1.01230 1.16809 0.80349 0.92524 1.14308 1.41056 1.04288 1.27803 1.49707 1.23883 0.89468 0.92761 0.92553 1.66259 1.09950 1.21755 1.29335 1.19174 0.94147 0.91832 0.95253 1.23597 0.96856 1.04365 1.07228 1.20252 0.96954 0.94422 0.97148 1.20781 0.91678 1.00759 1.00920 1.21065 1.00282 0.94795 0.98675 1.17893 0.83805 0.92912 0.97219 1.84844 1.52448 1.59227 1.32928 1.85241 1.06093 1.29976 1.47249 0.91701 0.84730 0.86804 0.86691 0.86103 0.73120 0.85498 0.84909 0.84742 0.75749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.14 13.67 55.48 0.76 -23.38 16 2 C 0.04 1.11 5.49 -17.52 -0.10 1.01 16 3 Si 0.94 19.69 29.55 -169.99 -5.02 14.66 16 4 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 7 C -0.40 -10.40 9.49 30.87 0.29 -10.11 16 8 H 0.10 2.27 5.20 -52.49 -0.27 2.00 16 9 O -0.17 -4.45 9.43 0.02 0.00 -4.45 16 10 C 0.14 3.22 6.67 -38.92 -0.26 2.96 16 11 C -0.21 -4.24 9.16 -39.43 -0.36 -4.60 16 12 C -0.08 -1.24 10.04 -39.57 -0.40 -1.64 16 13 C -0.19 -2.93 10.04 -39.56 -0.40 -3.33 16 14 C -0.10 -1.68 8.17 -39.41 -0.32 -2.00 16 15 C 0.06 1.10 6.11 -83.53 -0.51 0.59 16 16 N -0.60 -11.99 5.25 -10.64 -0.06 -12.04 16 17 C 0.39 7.44 8.02 -88.79 -0.71 6.73 16 18 N -0.55 -10.72 10.61 -11.05 -0.12 -10.84 16 19 C 0.12 2.05 6.88 -84.76 -0.58 1.47 16 20 C -0.20 -3.12 6.52 -38.63 -0.25 -3.38 16 21 C -0.06 -0.79 10.06 -39.35 -0.40 -1.18 16 22 C -0.12 -1.24 10.04 -39.61 -0.40 -1.64 16 23 C -0.13 -1.46 9.92 -39.62 -0.39 -1.85 16 24 C 0.13 1.93 6.76 -38.55 -0.26 1.67 16 25 O -0.49 -6.88 13.50 -19.54 -0.26 -7.15 16 26 S 0.07 1.06 20.06 -107.50 -2.16 -1.10 16 27 H 0.27 7.13 8.31 -40.82 -0.34 6.80 16 28 H 0.14 2.64 5.64 -52.48 -0.30 2.34 16 29 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 31 H 0.12 1.88 6.47 -52.49 -0.34 1.54 16 32 H 0.43 8.91 8.85 -40.82 -0.36 8.55 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.13 0.93 8.06 -52.48 -0.42 0.51 16 35 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.39 3.62 9.06 45.56 0.41 4.04 16 LS Contribution 330.58 15.07 4.98 4.98 Total: -1.00 -31.50 330.58 -9.03 -40.53 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -2.11 Total: 14.08 kcal Atomic # 6 Polarization: -10.25 SS G_CDS: -5.05 Total: -15.30 kcal Atomic # 7 Polarization: -46.85 SS G_CDS: 0.59 Total: -46.26 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: -0.26 Total: -11.59 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.66 kcal Atomic # 16 Polarization: 1.06 SS G_CDS: -2.16 Total: -1.10 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.50 -9.03 -40.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.406 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.529 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds