Wall clock time and date at job start Tue Mar 31 2020 14:36:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31582 * 1 3 3 Si 1.86795 * 120.00200 * 2 1 4 4 H 1.48505 * 109.47045 * 270.28100 * 3 2 1 5 5 H 1.48494 * 109.47378 * 30.28050 * 3 2 1 6 6 H 1.48500 * 109.46945 * 150.28174 * 3 2 1 7 7 C 1.38624 * 119.99546 * 180.28332 * 2 1 3 8 8 H 1.08000 * 120.00156 * 179.72500 * 7 2 1 9 9 O 1.34808 * 120.00276 * 359.71537 * 7 2 1 10 10 C 1.35779 * 117.00258 * 174.87472 * 9 7 2 11 11 C 1.38728 * 120.10186 * 5.26269 * 10 9 7 12 12 C 1.38167 * 120.00446 * 179.77055 * 11 10 9 13 13 C 1.38350 * 120.21004 * 0.50712 * 12 11 10 14 14 C 1.38182 * 120.20602 * 359.74933 * 13 12 11 15 15 C 1.38756 * 119.99425 * 359.97438 * 14 13 12 16 16 N 1.39854 * 120.11013 * 179.97438 * 15 14 13 17 17 C 1.38174 * 119.99682 * 41.53997 * 16 15 14 18 18 N 1.28841 * 124.82182 * 186.07918 * 17 16 15 19 19 C 1.34880 * 117.86614 * 179.81606 * 18 17 16 20 20 C 1.39663 * 112.90201 * 0.46549 * 19 18 17 21 21 C 1.39379 * 120.43143 * 179.72999 * 20 19 18 22 22 C 1.37715 * 120.29984 * 0.02562 * 21 20 19 23 23 C 1.38671 * 120.02442 * 359.97438 * 22 21 20 24 24 C 1.37685 * 120.53214 * 0.02562 * 23 22 21 25 25 O 1.35938 * 119.83492 * 180.02562 * 24 23 22 26 26 S 1.75802 * 124.82351 * 6.38675 * 17 16 15 27 27 H 0.97005 * 119.99318 * 359.71931 * 1 2 3 28 28 H 1.08003 * 120.00114 * 0.02562 * 11 10 9 29 29 H 1.08002 * 119.89445 * 180.27746 * 12 11 10 30 30 H 1.08001 * 119.89599 * 179.76533 * 13 12 11 31 31 H 1.08001 * 120.00390 * 179.97438 * 14 13 12 32 32 H 0.96998 * 120.00595 * 221.54345 * 16 15 14 33 33 H 1.08002 * 119.84906 * 180.02562 * 21 20 19 34 34 H 1.08008 * 119.98876 * 180.02562 * 22 21 20 35 35 H 1.07997 * 119.74088 * 180.02562 * 23 22 21 36 36 H 0.96696 * 114.00507 * 269.98421 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4914 2.0498 -1.4001 5 1 1.4504 2.6509 0.7059 6 1 3.5504 1.4383 0.6941 7 6 2.0089 -1.2006 -0.0059 8 1 3.0888 -1.2007 -0.0104 9 8 1.3348 -2.3680 -0.0059 10 6 2.0695 -3.5041 -0.1199 11 6 3.4553 -3.4394 -0.1200 12 6 4.2010 -4.5972 -0.2313 13 6 3.5703 -5.8225 -0.3536 14 6 2.1905 -5.8965 -0.3600 15 6 1.4332 -4.7397 -0.2429 16 7 0.0365 -4.8118 -0.2495 17 6 -0.6067 -5.8170 0.4469 18 7 -1.8755 -6.0385 0.4151 19 6 -2.3552 -7.0634 1.1491 20 6 -1.3586 -7.7366 1.8591 21 6 -1.6818 -8.8199 2.6743 22 6 -2.9889 -9.2385 2.7877 23 6 -3.9909 -8.5815 2.0897 24 6 -3.6915 -7.5093 1.2795 25 8 -4.6850 -6.8753 0.6021 26 16 0.1890 -6.9707 1.5083 27 1 -0.4849 0.8401 0.0041 28 1 3.9514 -2.4844 -0.0288 29 1 5.2798 -4.5452 -0.2266 30 1 4.1582 -6.7239 -0.4442 31 1 1.7015 -6.8547 -0.4560 32 1 -0.4807 -4.1562 -0.7430 33 1 -0.9037 -9.3335 3.2195 34 1 -3.2338 -10.0784 3.4211 35 1 -5.0144 -8.9133 2.1823 36 1 -4.8567 -7.2399 -0.2769 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212596340.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:38 Heat of formation + Delta-G solvation = 2.934453 kcal Electronic energy + Delta-G solvation = -23978.101899 eV Core-core repulsion = 20326.055536 eV Total energy + Delta-G solvation = -3652.046364 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.47675 -41.08387 -39.09245 -38.29197 -37.37304 -35.95395 -34.32231 -31.21816 -30.99295 -30.60848 -29.21452 -27.39894 -25.50294 -24.08153 -23.51763 -22.78818 -22.16675 -20.20851 -19.91497 -19.37366 -18.45767 -18.09817 -17.44686 -16.92617 -16.65639 -16.38313 -16.19352 -15.86484 -15.69636 -15.57800 -15.37269 -15.21389 -14.83609 -14.46682 -13.62235 -13.59125 -13.44808 -13.38225 -13.00236 -12.71200 -12.61630 -12.42498 -12.34052 -12.15913 -11.57980 -11.50802 -11.30647 -10.88536 -10.84220 -10.71780 -9.84046 -9.24458 -9.02760 -8.51677 -8.44221 -6.17562 -0.52649 -0.09045 0.07738 0.39329 0.53540 0.76320 1.33971 1.42978 1.44176 1.51188 1.80528 2.14249 2.59828 2.76927 3.09595 3.21059 3.29613 3.37723 3.94089 4.02452 4.16473 4.24414 4.33860 4.42161 4.45832 4.56045 4.71474 4.75076 4.97082 5.04837 5.10462 5.23439 5.35122 5.37008 5.46161 5.68214 5.68856 5.76582 5.95069 6.11049 6.13116 6.65717 6.89460 6.94357 7.70186 8.71722 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.014958 B = 0.003524 C = 0.002983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1871.457205 B = 7942.825915 C = 9385.331486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.918 5.918 2 C -0.021 4.021 3 Si 1.018 2.982 4 H -0.263 1.263 5 H -0.276 1.276 6 H -0.249 1.249 7 C -0.412 4.412 8 H 0.108 0.892 9 O -0.222 6.222 10 C 0.103 3.897 11 C -0.221 4.221 12 C -0.072 4.072 13 C -0.157 4.157 14 C -0.102 4.102 15 C 0.054 3.946 16 N -0.616 5.616 17 C 0.358 3.642 18 N -0.573 5.573 19 C 0.068 3.932 20 C -0.209 4.209 21 C -0.070 4.070 22 C -0.093 4.093 23 C -0.116 4.116 24 C 0.113 3.887 25 O -0.503 6.503 26 S 0.090 5.910 27 H 0.271 0.729 28 H 0.130 0.870 29 H 0.157 0.843 30 H 0.163 0.837 31 H 0.138 0.862 32 H 0.414 0.586 33 H 0.158 0.842 34 H 0.182 0.818 35 H 0.168 0.832 36 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.284 -19.935 3.218 20.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.219 4.219 3 Si 0.837 3.163 4 H -0.188 1.188 5 H -0.202 1.202 6 H -0.172 1.172 7 C -0.488 4.488 8 H 0.125 0.875 9 O -0.128 6.128 10 C 0.050 3.950 11 C -0.241 4.241 12 C -0.090 4.090 13 C -0.176 4.176 14 C -0.124 4.124 15 C -0.041 4.041 16 N -0.246 5.246 17 C -0.017 4.017 18 N -0.299 5.299 19 C -0.052 4.052 20 C -0.329 4.329 21 C -0.093 4.093 22 C -0.115 4.115 23 C -0.137 4.137 24 C 0.064 3.936 25 O -0.315 6.315 26 S 0.339 5.661 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.174 0.826 30 H 0.180 0.820 31 H 0.156 0.844 32 H 0.252 0.748 33 H 0.175 0.825 34 H 0.199 0.801 35 H 0.186 0.814 36 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 1.701 -19.171 3.698 19.598 hybrid contribution -1.141 1.445 -0.961 2.077 sum 0.560 -17.726 2.737 17.945 Atomic orbital electron populations 1.70210 1.08080 1.28744 1.48530 1.26569 0.96752 1.02756 0.95830 0.84592 0.77929 0.74581 0.79198 1.18841 1.20153 1.17249 1.21851 0.92709 0.81108 1.53100 0.87502 1.83941 1.35652 1.12319 1.80838 1.19748 0.91947 0.86918 0.96381 1.21279 0.91847 1.00970 1.10028 1.21299 1.00898 0.90903 0.95910 1.21059 0.92562 0.98909 1.05089 1.20950 0.95124 0.95470 1.00845 1.17185 0.80685 0.92787 1.13468 1.41059 1.04383 1.28344 1.50794 1.24026 0.90164 0.93615 0.93903 1.66193 1.10797 1.22947 1.30004 1.19593 0.95897 0.92655 0.97086 1.23896 0.95815 1.05279 1.07882 1.20755 0.98851 0.93311 0.96409 1.21400 0.90305 1.00596 0.99166 1.21512 1.02388 0.93038 0.96766 1.18321 0.82996 0.94007 0.98250 1.84785 1.52191 1.60243 1.34254 1.84807 1.06504 1.28571 1.46200 0.91993 0.85248 0.82563 0.81966 0.84401 0.74815 0.82451 0.80068 0.81440 0.73801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.15 13.67 21.61 0.30 -55.86 16 2 C -0.02 -1.18 5.49 84.82 0.47 -0.71 16 3 Si 1.02 42.20 29.55 68.60 2.03 44.23 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.28 -11.27 7.11 99.48 0.71 -10.56 16 6 H -0.25 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.41 -23.09 9.49 67.91 0.64 -22.45 16 8 H 0.11 5.39 5.20 -2.91 -0.02 5.38 16 9 O -0.22 -12.76 9.43 -22.84 -0.22 -12.98 16 10 C 0.10 4.87 6.67 22.70 0.15 5.02 16 11 C -0.22 -8.78 9.16 22.37 0.20 -8.57 16 12 C -0.07 -2.12 10.04 22.28 0.22 -1.89 16 13 C -0.16 -4.30 10.04 22.28 0.22 -4.07 16 14 C -0.10 -3.35 8.17 22.38 0.18 -3.17 16 15 C 0.05 2.23 6.11 38.30 0.23 2.46 16 16 N -0.62 -26.74 5.25 -187.58 -0.98 -27.73 16 17 C 0.36 14.47 8.02 179.71 1.44 15.91 16 18 N -0.57 -23.83 10.61 -188.87 -2.00 -25.83 16 19 C 0.07 2.38 6.88 39.82 0.27 2.66 16 20 C -0.21 -6.27 6.52 22.89 0.15 -6.12 16 21 C -0.07 -1.44 10.06 22.42 0.23 -1.22 16 22 C -0.09 -1.47 10.04 22.25 0.22 -1.24 16 23 C -0.12 -2.25 9.92 22.24 0.22 -2.03 16 24 C 0.11 3.24 6.76 22.94 0.15 3.40 16 25 O -0.50 -14.33 13.50 -92.85 -1.25 -15.59 16 26 S 0.09 2.89 20.06 -56.49 -1.13 1.75 16 27 H 0.27 15.37 8.31 -92.70 -0.77 14.60 16 28 H 0.13 5.16 5.64 -2.91 -0.02 5.14 16 29 H 0.16 3.35 8.06 -2.91 -0.02 3.32 16 30 H 0.16 3.03 8.06 -2.91 -0.02 3.01 16 31 H 0.14 4.05 6.47 -2.91 -0.02 4.03 16 32 H 0.41 19.44 8.85 -92.71 -0.82 18.62 16 33 H 0.16 2.25 8.06 -2.91 -0.02 2.23 16 34 H 0.18 1.20 8.06 -2.91 -0.02 1.18 16 35 H 0.17 2.13 8.06 -2.91 -0.02 2.11 16 36 H 0.40 7.68 9.06 -74.06 -0.67 7.01 16 Total: -1.00 -77.84 330.58 1.44 -76.40 By element: Atomic # 1 Polarization: 37.94 SS G_CDS: -0.31 Total: 37.63 kcal Atomic # 6 Polarization: -27.05 SS G_CDS: 5.02 Total: -22.03 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -2.69 Total: -109.41 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -1.47 Total: -28.56 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 16 Polarization: 2.89 SS G_CDS: -1.13 Total: 1.75 kcal Total: -77.84 1.44 -76.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212596340.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.330 kcal (2) G-P(sol) polarization free energy of solvation -77.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.395 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds