Wall clock time and date at job start Tue Mar 31 2020 14:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86797 * 120.00064 * 2 1 4 4 H 1.48492 * 109.47172 * 239.72286 * 3 2 1 5 5 H 1.48500 * 109.46872 * 359.72049 * 3 2 1 6 6 H 1.48498 * 109.47216 * 119.72044 * 3 2 1 7 7 C 1.38628 * 119.99927 * 179.72059 * 2 1 3 8 8 H 1.08003 * 120.00147 * 180.28095 * 7 2 1 9 9 O 1.34807 * 120.00078 * 0.27553 * 7 2 1 10 10 C 1.35778 * 116.99681 * 175.24963 * 9 7 2 11 11 C 1.38727 * 120.10831 * 359.49925 * 10 9 7 12 12 C 1.38169 * 120.00408 * 179.71667 * 11 10 9 13 13 C 1.38352 * 120.21401 * 0.55741 * 12 11 10 14 14 C 1.38178 * 120.20839 * 359.71575 * 13 12 11 15 15 C 1.38773 * 119.99048 * 0.02562 * 14 13 12 16 16 N 1.39827 * 120.10547 * 179.97438 * 15 14 13 17 17 C 1.38360 * 119.99783 * 353.59174 * 16 15 14 18 18 C 1.36389 * 126.74029 * 176.22415 * 17 16 15 19 19 C 1.42009 * 103.85582 * 179.97438 * 18 17 16 20 20 C 1.47817 * 126.89060 * 180.02562 * 19 18 17 21 21 C 1.34823 * 125.26841 * 179.71189 * 20 19 18 22 22 C 1.37869 * 114.71847 * 179.83159 * 21 20 19 23 23 C 1.33684 * 115.06775 * 0.46651 * 22 21 20 24 24 S 1.75854 * 109.74866 * 359.74843 * 23 22 21 25 25 N 1.31428 * 106.21702 * 359.97438 * 19 18 17 26 26 O 1.20892 * 111.60383 * 359.74457 * 25 19 18 27 27 H 0.97006 * 119.99871 * 179.97438 * 1 2 3 28 28 H 1.08006 * 119.99319 * 359.97054 * 11 10 9 29 29 H 1.08009 * 119.88996 * 180.27150 * 12 11 10 30 30 H 1.07997 * 119.89471 * 179.74700 * 13 12 11 31 31 H 1.08000 * 120.00400 * 179.97438 * 14 13 12 32 32 H 0.96993 * 120.00004 * 173.58307 * 16 15 14 33 33 H 1.07996 * 128.07220 * 359.93282 * 18 17 16 34 34 H 1.07995 * 122.63601 * 0.02562 * 21 20 19 35 35 H 1.08005 * 122.46190 * 180.21097 * 22 21 20 36 36 H 1.08004 * 125.12326 * 179.77540 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1086 1.6934 -1.2090 5 1 1.2848 2.7464 -0.0068 6 1 3.0984 1.6993 1.2159 7 6 2.0089 -1.2005 0.0059 8 1 3.0890 -1.2006 0.0104 9 8 1.3349 -2.3680 0.0059 10 6 2.0713 -3.5049 -0.0884 11 6 3.4530 -3.4326 -0.1897 12 6 4.2007 -4.5911 -0.2797 13 6 3.5752 -5.8251 -0.2807 14 6 2.1991 -5.9072 -0.1859 15 6 1.4401 -4.7493 -0.0897 16 7 0.0475 -4.8295 0.0058 17 6 -0.5859 -6.0523 -0.1284 18 6 -1.9199 -6.2998 0.0106 19 6 -2.0335 -7.6953 -0.2272 20 6 -3.2722 -8.5015 -0.2034 21 6 -3.3430 -9.8269 -0.4399 22 6 -4.6117 -10.3603 -0.3574 23 6 -5.5771 -9.4828 -0.0658 24 16 -4.8830 -7.8790 0.1304 25 7 -0.8164 -8.1258 -0.4737 26 8 -0.0086 -7.2277 -0.4275 27 1 -0.4850 -0.8401 -0.0004 28 1 3.9445 -2.4709 -0.1942 29 1 5.2766 -4.5328 -0.3541 30 1 4.1643 -6.7271 -0.3554 31 1 1.7142 -6.8722 -0.1874 32 1 -0.4746 -4.0280 0.1663 33 1 -2.7063 -5.5984 0.2470 34 1 -2.4739 -10.4243 -0.6725 35 1 -4.8113 -11.4091 -0.5205 36 1 -6.6254 -9.7228 0.0346 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212598165.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:36 Heat of formation + Delta-G solvation = 106.090661 kcal Electronic energy + Delta-G solvation = -23741.545149 eV Core-core repulsion = 20093.971974 eV Total energy + Delta-G solvation = -3647.573175 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.63778 -39.60097 -38.00286 -37.08807 -35.68236 -34.17638 -32.43540 -30.75733 -29.52746 -29.16365 -27.94094 -25.17368 -24.84284 -23.28705 -22.47187 -21.63662 -21.14361 -19.02310 -18.73898 -18.27716 -17.56728 -17.45965 -16.76141 -16.34665 -15.76179 -15.27620 -14.78740 -14.29458 -14.17725 -13.93205 -13.66785 -13.43883 -13.32876 -13.09285 -13.01762 -12.76473 -12.52140 -12.49586 -11.36402 -11.28981 -11.19800 -10.96832 -10.87969 -10.87550 -10.77312 -10.58086 -10.36801 -9.62967 -9.01785 -8.86257 -8.71078 -8.56429 -7.85556 -6.92626 -6.89248 -4.18485 0.43864 1.30023 1.52697 1.75201 2.05836 2.14065 2.41212 2.54681 2.94002 3.17547 3.21588 3.38314 3.72349 3.99744 4.13501 4.39653 4.72822 4.81678 4.82981 5.02798 5.18299 5.28086 5.36363 5.43301 5.54423 5.62304 5.76687 5.87582 5.95223 6.01710 6.16096 6.20459 6.28066 6.51265 6.62880 6.87673 7.16644 7.19610 7.41544 7.53492 7.58682 8.24762 8.45482 8.76550 9.40361 10.53736 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.016501 B = 0.002839 C = 0.002428 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1696.422998 B = 9860.230035 C =11530.126951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.012 3.988 3 Si 1.095 2.905 4 H -0.281 1.281 5 H -0.273 1.273 6 H -0.281 1.281 7 C -0.469 4.469 8 H 0.086 0.914 9 O -0.206 6.206 10 C 0.130 3.870 11 C -0.205 4.205 12 C -0.094 4.094 13 C -0.174 4.174 14 C -0.125 4.125 15 C 0.079 3.921 16 N -0.607 5.607 17 C 0.269 3.731 18 C -0.316 4.316 19 C 0.120 3.880 20 C -0.115 4.115 21 C -0.112 4.112 22 C -0.135 4.135 23 C -0.217 4.217 24 S 0.152 5.848 25 N -0.373 5.373 26 O 0.075 5.925 27 H 0.279 0.721 28 H 0.135 0.865 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.135 0.865 32 H 0.438 0.562 33 H 0.170 0.830 34 H 0.145 0.855 35 H 0.143 0.857 36 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.020 -14.601 0.177 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.193 4.193 3 Si 0.919 3.081 4 H -0.207 1.207 5 H -0.197 1.197 6 H -0.207 1.207 7 C -0.545 4.545 8 H 0.103 0.897 9 O -0.111 6.111 10 C 0.075 3.925 11 C -0.225 4.225 12 C -0.113 4.113 13 C -0.194 4.194 14 C -0.146 4.146 15 C -0.016 4.016 16 N -0.238 5.238 17 C 0.103 3.897 18 C -0.347 4.347 19 C -0.038 4.038 20 C -0.233 4.233 21 C -0.145 4.145 22 C -0.165 4.165 23 C -0.354 4.354 24 S 0.415 5.585 25 N -0.090 5.090 26 O 0.022 5.978 27 H 0.089 0.911 28 H 0.153 0.847 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.152 0.848 32 H 0.280 0.720 33 H 0.187 0.813 34 H 0.163 0.837 35 H 0.161 0.839 36 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -6.403 -12.632 0.228 14.164 hybrid contribution 0.257 -2.098 -0.116 2.117 sum -6.146 -14.731 0.112 15.962 Atomic orbital electron populations 1.70628 1.06525 1.31371 1.42504 1.26542 0.96803 1.01091 0.94899 0.83107 0.74541 0.73302 0.77179 1.20672 1.19747 1.20658 1.22171 0.93210 0.81747 1.57325 0.89675 1.83544 1.35301 1.12076 1.80195 1.18670 0.90661 0.85616 0.97520 1.21026 0.92625 0.99443 1.09377 1.20807 0.98894 0.92115 0.99497 1.20478 0.93376 0.97221 1.08286 1.20861 0.94325 0.95771 1.03642 1.17062 0.81192 0.92314 1.11052 1.41080 1.05210 1.04215 1.73329 1.20571 0.89384 0.83461 0.96235 1.21513 0.94754 0.95697 1.22690 1.20291 0.90689 0.91202 1.01619 1.21747 0.94499 0.95955 1.11082 1.20379 0.98824 0.93399 1.01879 1.20056 0.91702 1.01175 1.03580 1.25858 1.03691 0.96210 1.09606 1.84278 0.96896 1.09144 1.68138 1.74208 0.99698 1.10631 1.24419 1.84982 1.32474 1.11875 1.68428 0.91067 0.84736 0.86924 0.86761 0.84753 0.71978 0.81262 0.83730 0.83912 0.81480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.68 13.70 55.48 0.76 -23.92 16 2 C 0.01 0.32 5.49 -17.52 -0.10 0.22 16 3 Si 1.09 22.56 29.92 -169.99 -5.09 17.47 16 4 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 5 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 6 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.47 -12.32 9.48 30.88 0.29 -12.03 16 8 H 0.09 2.11 5.21 -52.48 -0.27 1.83 16 9 O -0.21 -5.26 8.42 0.03 0.00 -5.26 16 10 C 0.13 2.91 6.67 -38.92 -0.26 2.65 16 11 C -0.20 -4.21 9.16 -39.43 -0.36 -4.57 16 12 C -0.09 -1.64 10.04 -39.57 -0.40 -2.04 16 13 C -0.17 -2.94 10.04 -39.56 -0.40 -3.34 16 14 C -0.12 -2.27 9.17 -39.41 -0.36 -2.63 16 15 C 0.08 1.59 6.64 -83.53 -0.55 1.03 16 16 N -0.61 -11.08 5.54 -10.26 -0.06 -11.14 16 17 C 0.27 4.56 7.83 -15.27 -0.12 4.44 16 18 C -0.32 -4.85 11.03 -38.80 -0.43 -5.28 16 19 C 0.12 1.86 7.15 -82.68 -0.59 1.27 16 20 C -0.11 -1.51 6.44 -36.88 -0.24 -1.75 16 21 C -0.11 -1.30 10.06 -40.93 -0.41 -1.71 16 22 C -0.13 -1.24 10.16 -41.31 -0.42 -1.66 16 23 C -0.22 -1.87 11.23 29.14 0.33 -1.54 16 24 S 0.15 1.59 23.16 -107.50 -2.49 -0.90 16 25 N -0.37 -6.24 12.09 33.32 0.40 -5.84 16 26 O 0.08 1.30 7.68 16.45 0.13 1.42 16 27 H 0.28 7.89 7.97 -40.82 -0.33 7.56 16 28 H 0.14 2.77 5.63 -52.48 -0.30 2.47 16 29 H 0.11 1.62 8.06 -52.48 -0.42 1.20 16 30 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 31 H 0.14 2.31 4.68 -52.76 -0.25 2.07 16 32 H 0.44 7.92 8.21 -40.82 -0.34 7.59 16 33 H 0.17 2.25 8.06 -52.49 -0.42 1.82 16 34 H 0.15 1.62 8.06 -52.49 -0.42 1.20 16 35 H 0.14 0.94 8.06 -52.48 -0.42 0.52 16 36 H 0.17 0.97 8.06 -52.48 -0.42 0.54 16 LS Contribution 332.45 15.07 5.01 5.01 Total: -1.00 -29.29 332.45 -8.16 -37.45 By element: Atomic # 1 Polarization: 15.45 SS G_CDS: -2.81 Total: 12.64 kcal Atomic # 6 Polarization: -22.91 SS G_CDS: -4.02 Total: -26.93 kcal Atomic # 7 Polarization: -42.01 SS G_CDS: 1.11 Total: -40.90 kcal Atomic # 8 Polarization: -3.97 SS G_CDS: 0.13 Total: -3.84 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.09 Total: 17.47 kcal Atomic # 16 Polarization: 1.59 SS G_CDS: -2.49 Total: -0.90 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.29 -8.16 -37.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212598165.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.541 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds