Wall clock time and date at job start Tue Mar 31 2020 14:36:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86808 * 119.99664 * 2 1 4 4 H 1.48501 * 109.47133 * 239.99673 * 3 2 1 5 5 H 1.48500 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47048 * 120.00137 * 3 2 1 7 7 C 1.38608 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99855 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00352 * 359.97438 * 7 2 1 10 10 C 1.35782 * 117.00172 * 174.89838 * 9 7 2 11 11 C 1.38716 * 120.10723 * 5.62428 * 10 9 7 12 12 C 1.38177 * 120.00776 * 180.28028 * 11 10 9 13 13 C 1.38350 * 120.21751 * 359.69802 * 12 11 10 14 14 C 1.38183 * 120.20654 * 359.97438 * 13 12 11 15 15 C 1.38791 * 119.99083 * 0.02821 * 14 13 12 16 16 N 1.39750 * 120.10818 * 179.97438 * 15 14 13 17 17 C 1.39899 * 120.00000 * 7.58332 * 16 15 14 18 18 C 1.39339 * 120.09864 * 42.11313 * 17 16 15 19 19 C 1.36101 * 120.67088 * 180.23191 * 18 17 16 20 20 C 1.41103 * 120.66520 * 359.78920 * 19 18 17 21 21 N 1.34958 * 128.70621 * 179.97438 * 20 19 18 22 22 C 1.28607 * 117.92544 * 179.97438 * 21 20 19 23 23 O 1.35366 * 124.79837 * 179.97438 * 22 21 20 24 24 S 1.75805 * 110.40581 * 0.02562 * 22 21 20 25 25 C 1.39781 * 118.47783 * 359.97438 * 20 19 18 26 26 C 1.38351 * 120.09625 * 221.89812 * 17 16 15 27 27 H 0.97003 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99697 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.88785 * 179.72074 * 12 11 10 30 30 H 1.07993 * 119.90206 * 180.02562 * 13 12 11 31 31 H 1.07998 * 120.00289 * 180.02562 * 14 13 12 32 32 H 0.96997 * 120.00414 * 187.58205 * 16 15 14 33 33 H 1.08002 * 119.65646 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.66659 * 179.80076 * 19 18 17 35 35 H 0.96701 * 113.99581 * 0.03834 * 23 22 21 36 36 H 1.08004 * 120.00678 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6179 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0089 -1.2004 -0.0005 8 1 3.0889 -1.2003 -0.0001 9 8 1.3350 -2.3679 -0.0005 10 6 2.0704 -3.5042 -0.1087 11 6 3.4560 -3.4402 -0.0954 12 6 4.2024 -4.5972 -0.2114 13 6 3.5724 -5.8228 -0.3347 14 6 2.1926 -5.8976 -0.3422 15 6 1.4345 -4.7408 -0.2263 16 7 0.0389 -4.8136 -0.2341 17 6 -0.5968 -6.0593 -0.1987 18 6 -0.1237 -7.0615 0.6458 19 6 -0.7303 -8.2792 0.6861 20 6 -1.8538 -8.5506 -0.1233 21 7 -2.5740 -9.6884 -0.2133 22 6 -3.5693 -9.7084 -1.0276 23 8 -4.3822 -10.7721 -1.2279 24 16 -3.7239 -8.1596 -1.8448 25 6 -2.3282 -7.5408 -0.9653 26 6 -1.6999 -6.2982 -0.9988 27 1 -0.4850 0.8401 0.0004 28 1 3.9515 -2.4854 0.0007 29 1 5.2810 -4.5447 -0.2053 30 1 4.1607 -6.7239 -0.4246 31 1 1.7042 -6.8560 -0.4382 32 1 -0.4891 -4.0004 -0.2640 33 1 0.7353 -6.8711 1.2722 34 1 -0.3480 -9.0454 1.3443 35 1 -4.1549 -11.5466 -0.6953 36 1 -2.0713 -5.5227 -1.6523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212600242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:31 Heat of formation + Delta-G solvation = 31.725494 kcal Electronic energy + Delta-G solvation = -23782.821348 eV Core-core repulsion = 20132.023458 eV Total energy + Delta-G solvation = -3650.797890 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.54656 -39.50738 -38.53730 -37.03813 -36.04528 -33.98322 -32.32259 -31.23664 -29.33247 -29.16504 -27.25958 -25.44465 -24.47935 -23.16040 -22.18523 -21.36245 -21.03259 -18.70178 -18.47497 -18.01085 -17.40132 -17.10365 -15.86398 -15.65106 -15.39042 -14.89876 -14.75207 -14.54342 -14.23718 -13.94517 -13.80418 -13.70280 -13.55600 -13.03866 -12.82426 -12.59336 -12.42539 -11.90927 -11.73893 -11.29916 -11.03878 -10.95971 -10.89544 -10.73548 -10.50618 -10.16522 -10.00846 -9.95790 -9.51226 -8.89182 -8.34092 -8.18351 -7.64034 -6.59399 -6.50817 -4.07561 0.49964 0.65205 1.16985 1.52792 2.03956 2.24937 2.47235 3.09733 3.10644 3.13395 3.38798 3.66433 3.73672 3.92065 4.35522 4.52315 4.74978 4.98812 5.10767 5.18704 5.26687 5.39710 5.55768 5.72005 5.77289 5.86957 5.97010 6.11225 6.13424 6.35691 6.37481 6.58833 6.63089 6.78983 6.84822 7.07474 7.19197 7.34049 7.46635 7.55813 7.85461 7.95999 8.10976 8.95284 9.60995 10.66802 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.002890 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.605029 B = 9685.087795 C =10939.724024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.040 3.960 3 Si 0.940 3.060 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.387 4.387 8 H 0.091 0.909 9 O -0.183 6.183 10 C 0.114 3.886 11 C -0.206 4.206 12 C -0.107 4.107 13 C -0.173 4.173 14 C -0.145 4.145 15 C 0.119 3.881 16 N -0.671 5.671 17 C 0.213 3.787 18 C -0.132 4.132 19 C -0.046 4.046 20 C 0.068 3.932 21 N -0.524 5.524 22 C 0.284 3.716 23 O -0.435 6.435 24 S 0.115 5.885 25 C -0.150 4.150 26 C -0.122 4.122 27 H 0.270 0.730 28 H 0.130 0.870 29 H 0.107 0.893 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.421 0.579 33 H 0.144 0.856 34 H 0.135 0.865 35 H 0.411 0.589 36 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.405 -15.629 -1.199 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C -0.164 4.164 3 Si 0.765 3.235 4 H -0.195 1.195 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.464 4.464 8 H 0.108 0.892 9 O -0.088 6.088 10 C 0.059 3.941 11 C -0.226 4.226 12 C -0.127 4.127 13 C -0.192 4.192 14 C -0.167 4.167 15 C 0.022 3.978 16 N -0.295 5.295 17 C 0.109 3.891 18 C -0.154 4.154 19 C -0.068 4.068 20 C -0.050 4.050 21 N -0.257 5.257 22 C -0.040 4.040 23 O -0.233 6.233 24 S 0.362 5.638 25 C -0.269 4.269 26 C -0.150 4.150 27 H 0.080 0.920 28 H 0.148 0.852 29 H 0.126 0.874 30 H 0.127 0.873 31 H 0.140 0.860 32 H 0.260 0.740 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.267 0.733 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -4.773 -15.305 -2.059 16.164 hybrid contribution 1.168 0.759 0.860 1.637 sum -3.605 -14.546 -1.198 15.034 Atomic orbital electron populations 1.70006 1.05870 1.27809 1.46385 1.25233 0.95862 0.98709 0.96623 0.85792 0.78709 0.79838 0.79179 1.19533 1.20323 1.19538 1.21212 0.91766 0.80577 1.52801 0.89153 1.83864 1.34046 1.11195 1.79652 1.18902 0.90518 0.86795 0.97872 1.20976 0.92787 0.99204 1.09628 1.20691 0.98585 0.92301 1.01108 1.20424 0.93478 0.97045 1.08264 1.20566 0.93928 0.95886 1.06334 1.16974 0.81945 0.91975 1.06948 1.41962 1.03811 1.05373 1.78329 1.17466 0.92109 0.86907 0.92572 1.20835 1.02408 0.93132 0.99071 1.20149 0.92403 0.96837 0.97370 1.18400 0.98624 0.86933 1.01048 1.66487 1.08386 1.28002 1.22780 1.24969 0.91414 0.92986 0.94659 1.85088 1.50423 1.22431 1.65398 1.84996 1.29678 1.04317 1.44763 1.23210 1.00686 0.99685 1.03354 1.19989 0.99199 0.94880 1.00928 0.91988 0.85237 0.87441 0.87336 0.86024 0.74003 0.83877 0.84743 0.73256 0.84841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.17 13.67 55.48 0.76 -23.41 16 2 C 0.04 1.04 5.49 -17.52 -0.10 0.95 16 3 Si 0.94 19.89 29.55 -169.99 -5.02 14.86 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.80 7.11 56.52 0.40 -5.39 16 6 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 7 C -0.39 -10.27 9.49 30.87 0.29 -9.98 16 8 H 0.09 2.23 5.21 -52.48 -0.27 1.95 16 9 O -0.18 -4.81 9.02 0.02 0.00 -4.81 16 10 C 0.11 2.56 6.67 -38.91 -0.26 2.30 16 11 C -0.21 -4.24 9.16 -39.43 -0.36 -4.60 16 12 C -0.11 -1.88 10.04 -39.56 -0.40 -2.28 16 13 C -0.17 -2.84 10.04 -39.56 -0.40 -3.24 16 14 C -0.15 -2.50 8.05 -39.40 -0.32 -2.82 16 15 C 0.12 2.33 6.44 -83.55 -0.54 1.80 16 16 N -0.67 -12.19 5.47 -8.27 -0.05 -12.23 16 17 C 0.21 3.33 5.86 -83.72 -0.49 2.84 16 18 C -0.13 -1.84 7.29 -39.94 -0.29 -2.13 16 19 C -0.05 -0.60 10.04 -39.26 -0.39 -1.00 16 20 C 0.07 0.96 6.94 -84.83 -0.59 0.37 16 21 N -0.52 -7.00 10.60 -11.83 -0.13 -7.13 16 22 C 0.28 3.36 8.81 51.41 0.45 3.81 16 23 O -0.43 -3.84 13.63 -17.79 -0.24 -4.09 16 24 S 0.12 1.38 23.39 -107.50 -2.51 -1.14 16 25 C -0.15 -2.12 6.52 -38.62 -0.25 -2.37 16 26 C -0.12 -1.79 9.99 -39.15 -0.39 -2.18 16 27 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 28 H 0.13 2.67 5.64 -52.49 -0.30 2.37 16 29 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 30 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.12 1.87 5.38 -52.49 -0.28 1.59 16 32 H 0.42 8.17 8.22 -40.82 -0.34 7.83 16 33 H 0.14 1.95 6.68 -52.49 -0.35 1.60 16 34 H 0.13 1.46 8.06 -52.49 -0.42 1.03 16 35 H 0.41 1.84 9.06 45.56 0.41 2.25 16 36 H 0.13 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 328.21 15.07 4.95 4.95 Total: -1.00 -30.07 328.21 -8.23 -38.30 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -1.95 Total: 13.23 kcal Atomic # 6 Polarization: -14.50 SS G_CDS: -4.03 Total: -18.53 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 0.59 Total: -42.77 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -0.24 Total: -8.90 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 1.38 SS G_CDS: -2.51 Total: -1.14 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.07 -8.23 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.022 kcal (2) G-P(sol) polarization free energy of solvation -30.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds