Wall clock time and date at job start Tue Mar 31 2020 14:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31581 * 1 3 3 Si 1.86808 * 119.99664 * 2 1 4 4 H 1.48501 * 109.47133 * 239.99673 * 3 2 1 5 5 H 1.48500 * 109.47221 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47048 * 120.00137 * 3 2 1 7 7 C 1.38608 * 120.00152 * 180.02562 * 2 1 3 8 8 H 1.08006 * 119.99855 * 180.02562 * 7 2 1 9 9 O 1.34806 * 120.00352 * 359.97438 * 7 2 1 10 10 C 1.35782 * 117.00172 * 174.89838 * 9 7 2 11 11 C 1.38716 * 120.10723 * 5.62428 * 10 9 7 12 12 C 1.38177 * 120.00776 * 180.28028 * 11 10 9 13 13 C 1.38350 * 120.21751 * 359.69802 * 12 11 10 14 14 C 1.38183 * 120.20654 * 359.97438 * 13 12 11 15 15 C 1.38791 * 119.99083 * 0.02821 * 14 13 12 16 16 N 1.39750 * 120.10818 * 179.97438 * 15 14 13 17 17 C 1.39899 * 120.00000 * 7.58332 * 16 15 14 18 18 C 1.39339 * 120.09864 * 42.11313 * 17 16 15 19 19 C 1.36101 * 120.67088 * 180.23191 * 18 17 16 20 20 C 1.41103 * 120.66520 * 359.78920 * 19 18 17 21 21 N 1.34958 * 128.70621 * 179.97438 * 20 19 18 22 22 C 1.28607 * 117.92544 * 179.97438 * 21 20 19 23 23 O 1.35366 * 124.79837 * 179.97438 * 22 21 20 24 24 S 1.75805 * 110.40581 * 0.02562 * 22 21 20 25 25 C 1.39781 * 118.47783 * 359.97438 * 20 19 18 26 26 C 1.38351 * 120.09625 * 221.89812 * 17 16 15 27 27 H 0.97003 * 119.99931 * 359.97438 * 1 2 3 28 28 H 1.07999 * 119.99697 * 359.97438 * 11 10 9 29 29 H 1.07998 * 119.88785 * 179.72074 * 12 11 10 30 30 H 1.07993 * 119.90206 * 180.02562 * 13 12 11 31 31 H 1.07998 * 120.00289 * 180.02562 * 14 13 12 32 32 H 0.96997 * 120.00414 * 187.58205 * 16 15 14 33 33 H 1.08002 * 119.65646 * 0.02562 * 18 17 16 34 34 H 1.08002 * 119.66659 * 179.80076 * 19 18 17 35 35 H 0.96701 * 113.99581 * 0.03834 * 23 22 21 36 36 H 1.08004 * 120.00678 * 0.02562 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2498 1.6179 0.0000 4 1 3.1036 1.6965 -1.2125 5 1 1.2847 2.7465 0.0006 6 1 3.1035 1.6965 1.2125 7 6 2.0089 -1.2004 -0.0005 8 1 3.0889 -1.2003 -0.0001 9 8 1.3350 -2.3679 -0.0005 10 6 2.0704 -3.5042 -0.1087 11 6 3.4560 -3.4402 -0.0954 12 6 4.2024 -4.5972 -0.2114 13 6 3.5724 -5.8228 -0.3347 14 6 2.1926 -5.8976 -0.3422 15 6 1.4345 -4.7408 -0.2263 16 7 0.0389 -4.8136 -0.2341 17 6 -0.5968 -6.0593 -0.1987 18 6 -0.1237 -7.0615 0.6458 19 6 -0.7303 -8.2792 0.6861 20 6 -1.8538 -8.5506 -0.1233 21 7 -2.5740 -9.6884 -0.2133 22 6 -3.5693 -9.7084 -1.0276 23 8 -4.3822 -10.7721 -1.2279 24 16 -3.7239 -8.1596 -1.8448 25 6 -2.3282 -7.5408 -0.9653 26 6 -1.6999 -6.2982 -0.9988 27 1 -0.4850 0.8401 0.0004 28 1 3.9515 -2.4854 0.0007 29 1 5.2810 -4.5447 -0.2053 30 1 4.1607 -6.7239 -0.4246 31 1 1.7042 -6.8560 -0.4382 32 1 -0.4891 -4.0004 -0.2640 33 1 0.7353 -6.8711 1.2722 34 1 -0.3480 -9.0454 1.3443 35 1 -4.1549 -11.5466 -0.6953 36 1 -2.0713 -5.5227 -1.6523 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212600242.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:30 Heat of formation + Delta-G solvation = 9.912538 kcal Electronic energy + Delta-G solvation = -23783.767229 eV Core-core repulsion = 20132.023458 eV Total energy + Delta-G solvation = -3651.743771 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.67702 -40.87821 -39.63771 -38.38110 -37.35890 -35.20269 -34.20792 -32.35783 -30.73324 -30.55836 -28.52693 -27.30465 -25.52713 -24.34082 -23.37478 -22.83840 -22.31026 -19.86935 -19.67883 -19.48426 -18.86251 -18.31202 -17.37316 -16.64595 -16.54637 -16.31924 -15.95991 -15.78833 -15.67224 -15.45407 -15.23587 -14.92357 -14.74051 -14.31062 -14.16944 -13.86097 -13.58442 -13.48204 -13.35932 -12.70747 -12.48601 -12.41067 -12.24257 -12.10684 -11.92491 -11.31018 -11.28109 -11.12658 -10.97109 -10.75729 -9.52596 -9.26906 -9.12018 -8.43067 -8.02942 -6.05869 -0.55539 -0.30038 0.07560 0.50771 0.63515 0.79105 1.31394 1.36807 1.46234 1.51255 2.17699 2.32890 2.49669 2.59562 2.90566 3.22481 3.45733 3.47332 3.76326 4.06465 4.14201 4.18627 4.30522 4.35066 4.53143 4.63593 4.72788 4.81090 4.95912 5.09249 5.11568 5.14329 5.25082 5.42564 5.50367 5.66525 5.84969 6.00311 6.07584 6.14939 6.49079 6.53970 6.64651 7.03322 7.82621 8.79394 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.018182 B = 0.002890 C = 0.002559 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.605029 B = 9685.087795 C =10939.724024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.020 4.020 3 Si 1.011 2.989 4 H -0.260 1.260 5 H -0.275 1.275 6 H -0.260 1.260 7 C -0.405 4.405 8 H 0.098 0.902 9 O -0.227 6.227 10 C 0.066 3.934 11 C -0.213 4.213 12 C -0.113 4.113 13 C -0.147 4.147 14 C -0.146 4.146 15 C 0.119 3.881 16 N -0.681 5.681 17 C 0.190 3.810 18 C -0.129 4.129 19 C -0.040 4.040 20 C 0.065 3.935 21 N -0.538 5.538 22 C 0.296 3.704 23 O -0.426 6.426 24 S 0.136 5.864 25 C -0.171 4.171 26 C -0.123 4.123 27 H 0.270 0.730 28 H 0.120 0.880 29 H 0.142 0.858 30 H 0.152 0.848 31 H 0.145 0.855 32 H 0.409 0.591 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.432 0.568 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 -18.663 -1.344 18.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.218 4.218 3 Si 0.832 3.168 4 H -0.185 1.185 5 H -0.200 1.200 6 H -0.184 1.184 7 C -0.481 4.481 8 H 0.116 0.884 9 O -0.135 6.135 10 C 0.015 3.985 11 C -0.233 4.233 12 C -0.133 4.133 13 C -0.166 4.166 14 C -0.168 4.168 15 C 0.021 3.979 16 N -0.304 5.304 17 C 0.089 3.911 18 C -0.152 4.152 19 C -0.061 4.061 20 C -0.053 4.053 21 N -0.272 5.272 22 C -0.028 4.028 23 O -0.227 6.227 24 S 0.384 5.616 25 C -0.290 4.290 26 C -0.150 4.150 27 H 0.079 0.921 28 H 0.138 0.862 29 H 0.159 0.841 30 H 0.169 0.831 31 H 0.162 0.838 32 H 0.245 0.755 33 H 0.166 0.834 34 H 0.178 0.822 35 H 0.292 0.708 36 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.648 -18.447 -2.208 18.934 hybrid contribution 0.739 1.211 0.842 1.650 sum -2.908 -17.236 -1.365 17.533 Atomic orbital electron populations 1.70153 1.07683 1.28521 1.49391 1.26388 0.96792 1.02271 0.96324 0.84738 0.77425 0.74942 0.79729 1.18466 1.19990 1.18407 1.21663 0.92390 0.81449 1.52626 0.88429 1.83835 1.35144 1.11943 1.82543 1.19428 0.91677 0.86901 1.00504 1.21149 0.92382 1.00292 1.09469 1.21047 1.00199 0.91461 1.00560 1.20984 0.93341 0.98163 1.04115 1.20909 0.94447 0.95823 1.05583 1.17290 0.82901 0.91844 1.05844 1.41972 1.03370 1.05931 1.79096 1.17636 0.93009 0.86394 0.94047 1.20845 1.02604 0.92989 0.98730 1.20374 0.91759 0.96869 0.97129 1.18721 0.98770 0.87167 1.00673 1.66556 1.09175 1.27627 1.23858 1.25147 0.90725 0.93526 0.93413 1.85088 1.49442 1.22604 1.65592 1.84957 1.28367 1.04271 1.44010 1.23357 1.01817 0.99524 1.04266 1.20015 0.98928 0.95294 1.00741 0.92124 0.86207 0.84068 0.83072 0.83763 0.75480 0.83447 0.82159 0.70755 0.84989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.50 13.67 21.61 0.30 -54.21 16 2 C -0.02 -1.12 5.49 84.82 0.47 -0.66 16 3 Si 1.01 42.15 29.55 68.60 2.03 44.18 16 4 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 5 H -0.28 -11.14 7.11 99.48 0.71 -10.44 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.40 -22.69 9.49 67.91 0.64 -22.05 16 8 H 0.10 5.05 5.21 -2.91 -0.02 5.04 16 9 O -0.23 -12.79 9.02 -22.84 -0.21 -13.00 16 10 C 0.07 3.13 6.67 22.70 0.15 3.28 16 11 C -0.21 -8.87 9.16 22.37 0.20 -8.67 16 12 C -0.11 -3.69 10.04 22.28 0.22 -3.47 16 13 C -0.15 -4.30 10.04 22.28 0.22 -4.08 16 14 C -0.15 -4.73 8.05 22.39 0.18 -4.55 16 15 C 0.12 4.77 6.44 38.33 0.25 5.01 16 16 N -0.68 -25.87 5.47 -180.09 -0.99 -26.85 16 17 C 0.19 5.99 5.86 38.15 0.22 6.21 16 18 C -0.13 -3.44 7.29 22.04 0.16 -3.28 16 19 C -0.04 -0.96 10.04 22.48 0.23 -0.73 16 20 C 0.06 1.71 6.94 39.74 0.28 1.98 16 21 N -0.54 -12.98 10.60 -306.15 -3.25 -16.23 16 22 C 0.30 6.21 8.81 130.71 1.15 7.37 16 23 O -0.43 -6.15 13.63 -86.56 -1.18 -7.33 16 24 S 0.14 3.04 23.39 -56.49 -1.32 1.72 16 25 C -0.17 -4.63 6.52 22.89 0.15 -4.48 16 26 C -0.12 -3.62 9.99 22.55 0.23 -3.40 16 27 H 0.27 14.87 8.31 -92.71 -0.77 14.10 16 28 H 0.12 5.10 5.64 -2.91 -0.02 5.08 16 29 H 0.14 3.62 8.06 -2.91 -0.02 3.60 16 30 H 0.15 3.22 8.06 -2.91 -0.02 3.20 16 31 H 0.14 4.02 5.38 -2.91 -0.02 4.01 16 32 H 0.41 17.28 8.22 -92.71 -0.76 16.52 16 33 H 0.15 3.78 6.68 -2.91 -0.02 3.76 16 34 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 35 H 0.43 2.32 9.06 -74.06 -0.67 1.65 16 36 H 0.13 3.81 8.06 -2.91 -0.02 3.79 16 Total: -1.00 -68.97 328.21 -0.11 -69.08 By element: Atomic # 1 Polarization: 34.39 SS G_CDS: -0.24 Total: 34.15 kcal Atomic # 6 Polarization: -36.26 SS G_CDS: 4.75 Total: -31.51 kcal Atomic # 7 Polarization: -93.35 SS G_CDS: -3.94 Total: -97.29 kcal Atomic # 8 Polarization: -18.94 SS G_CDS: -1.39 Total: -20.33 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Atomic # 16 Polarization: 3.04 SS G_CDS: -1.32 Total: 1.72 kcal Total: -68.97 -0.11 -69.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212600242.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.990 kcal (2) G-P(sol) polarization free energy of solvation -68.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds