Wall clock time and date at job start Tue Mar 31 2020 15:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86799 * 120.00377 * 2 1 4 4 H 1.48500 * 109.47068 * 240.00007 * 3 2 1 5 5 H 1.48501 * 109.47023 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47386 * 120.00014 * 3 2 1 7 7 C 1.38636 * 119.99707 * 180.02562 * 2 1 3 8 8 H 1.07997 * 119.99779 * 180.02562 * 7 2 1 9 9 O 1.34807 * 119.99621 * 359.97438 * 7 2 1 10 10 C 1.35776 * 116.99477 * 185.06885 * 9 7 2 11 11 C 1.38752 * 120.10367 * 354.40099 * 10 9 7 12 12 C 1.38149 * 120.00065 * 180.29775 * 11 10 9 13 13 C 1.38355 * 120.20320 * 359.72472 * 12 11 10 14 14 C 1.38185 * 120.20167 * 359.97438 * 13 12 11 15 15 C 1.38721 * 119.99829 * 0.02562 * 14 13 12 16 16 N 1.40096 * 120.10200 * 180.02562 * 15 14 13 17 17 C 1.37147 * 125.09646 * 65.00278 * 16 15 14 18 18 C 1.34223 * 109.86706 * 180.02562 * 17 16 15 19 19 C 1.46507 * 107.03783 * 359.97438 * 18 17 16 20 20 C 1.37874 * 125.10421 * 245.00011 * 16 15 14 21 21 C 1.39175 * 133.34325 * 359.71449 * 20 16 15 22 22 C 1.37920 * 120.05405 * 179.83355 * 21 20 16 23 23 Cl 1.73598 * 119.64673 * 180.24194 * 22 21 20 24 24 C 1.38799 * 120.70278 * 0.48413 * 22 21 20 25 25 C 1.38376 * 120.28062 * 359.75606 * 24 22 21 26 26 N 1.39547 * 120.23053 * 180.02562 * 25 24 22 27 27 H 0.97009 * 119.99660 * 0.02562 * 1 2 3 28 28 H 1.08002 * 120.00157 * 359.97438 * 11 10 9 29 29 H 1.07999 * 119.89942 * 179.74422 * 12 11 10 30 30 H 1.08001 * 119.90031 * 180.02562 * 13 12 11 31 31 H 1.08002 * 119.99921 * 180.02562 * 14 13 12 32 32 H 1.07998 * 125.06743 * 359.97438 * 17 16 15 33 33 H 1.08002 * 126.47966 * 180.02562 * 18 17 16 34 34 H 1.07996 * 119.97067 * 0.28704 * 21 20 16 35 35 H 1.07997 * 119.85709 * 179.77730 * 24 22 21 36 36 H 0.97008 * 120.00157 * 179.97438 * 26 25 24 37 37 H 0.97001 * 120.00342 * 359.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6177 0.0000 4 1 3.1035 1.6963 -1.2125 5 1 1.2848 2.7464 -0.0006 6 1 3.1035 1.6963 1.2125 7 6 2.0088 -1.2007 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3346 -2.3680 -0.0005 10 6 2.0700 -3.5044 0.1058 11 6 3.4560 -3.4404 0.0913 12 6 4.2021 -4.5985 0.1935 13 6 3.5718 -5.8240 0.3162 14 6 2.1920 -5.8970 0.3378 15 6 1.4346 -4.7393 0.2357 16 7 0.0357 -4.8106 0.2579 17 6 -0.7159 -5.2258 1.3275 18 6 -2.0204 -5.1745 1.0157 19 6 -2.1134 -4.6873 -0.3629 20 6 -0.7922 -4.4741 -0.7920 21 6 -0.5577 -3.9995 -2.0791 22 6 -1.6165 -3.7507 -2.9272 23 17 -1.3116 -3.1649 -4.5326 24 6 -2.9235 -3.9591 -2.5089 25 6 -3.1815 -4.4258 -1.2321 26 7 -4.4960 -4.6354 -0.8129 27 1 -0.4850 0.8402 -0.0004 28 1 3.9515 -2.4856 -0.0051 29 1 5.2808 -4.5472 0.1779 30 1 4.1599 -6.7264 0.3961 31 1 1.7034 -6.8553 0.4340 32 1 -0.3174 -5.5469 2.2785 33 1 -2.8454 -5.4410 1.6596 34 1 0.4545 -3.8328 -2.4166 35 1 -3.7425 -3.7564 -3.1831 36 1 -4.6730 -4.9630 0.0829 37 1 -5.2326 -4.4535 -1.4171 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212602689.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:06 Heat of formation + Delta-G solvation = 43.483238 kcal Electronic energy + Delta-G solvation = -25118.790543 eV Core-core repulsion = 21466.458801 eV Total energy + Delta-G solvation = -3652.331743 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.44331 -40.62585 -38.74302 -38.00366 -37.30797 -34.95414 -34.33722 -33.45644 -30.94427 -30.18120 -29.50694 -28.53182 -27.36160 -24.14688 -23.58921 -23.14049 -22.41110 -21.01394 -19.88670 -19.43633 -18.24585 -17.88567 -17.10376 -16.72104 -16.66523 -16.37213 -15.95377 -15.64936 -15.49742 -15.31158 -15.08170 -14.63965 -14.44663 -14.25264 -13.86812 -13.69118 -13.51290 -13.07673 -12.79253 -12.76547 -12.61850 -12.54739 -12.40287 -12.31510 -12.17856 -11.92249 -11.36819 -10.99732 -10.82350 -10.09666 -9.55925 -9.17674 -8.95669 -8.46132 -7.91257 -6.14765 0.17670 0.36491 0.61940 0.72353 1.15485 1.31412 1.41848 1.46919 1.83863 2.07767 2.15982 2.73917 2.93373 3.04246 3.09479 3.37421 3.87091 4.00267 4.07485 4.20750 4.23069 4.39970 4.44065 4.52549 4.57319 4.67967 4.83914 4.94705 4.95588 5.04314 5.08904 5.25313 5.40796 5.44627 5.51432 5.61450 5.65245 5.89908 5.94710 6.04264 6.25228 6.56869 6.69095 6.95947 7.08777 7.72702 8.73458 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.008684 B = 0.005925 C = 0.004618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3223.666969 B = 4724.688750 C = 6061.936958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C -0.014 4.014 3 Si 1.011 2.989 4 H -0.259 1.259 5 H -0.274 1.274 6 H -0.256 1.256 7 C -0.419 4.419 8 H 0.101 0.899 9 O -0.201 6.201 10 C 0.117 3.883 11 C -0.242 4.242 12 C -0.058 4.058 13 C -0.180 4.180 14 C -0.063 4.063 15 C 0.012 3.988 16 N -0.418 5.418 17 C 0.033 3.967 18 C -0.188 4.188 19 C -0.188 4.188 20 C 0.143 3.857 21 C -0.180 4.180 22 C 0.029 3.971 23 Cl -0.076 7.076 24 C -0.246 4.246 25 C 0.280 3.720 26 N -0.849 5.849 27 H 0.270 0.730 28 H 0.125 0.875 29 H 0.154 0.846 30 H 0.162 0.838 31 H 0.146 0.854 32 H 0.190 0.810 33 H 0.179 0.821 34 H 0.090 0.910 35 H 0.149 0.851 36 H 0.409 0.591 37 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.556 -11.570 0.514 11.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.213 4.213 3 Si 0.830 3.170 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.180 1.180 7 C -0.495 4.495 8 H 0.118 0.882 9 O -0.106 6.106 10 C 0.064 3.936 11 C -0.262 4.262 12 C -0.075 4.075 13 C -0.199 4.199 14 C -0.082 4.082 15 C -0.079 4.079 16 N -0.095 5.095 17 C -0.090 4.090 18 C -0.213 4.213 19 C -0.196 4.196 20 C 0.035 3.965 21 C -0.204 4.204 22 C 0.001 3.999 23 Cl -0.047 7.047 24 C -0.272 4.272 25 C 0.171 3.829 26 N -0.388 5.388 27 H 0.079 0.921 28 H 0.143 0.857 29 H 0.172 0.828 30 H 0.180 0.820 31 H 0.164 0.836 32 H 0.207 0.793 33 H 0.197 0.803 34 H 0.108 0.892 35 H 0.167 0.833 36 H 0.239 0.761 37 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -2.644 -11.321 0.397 11.632 hybrid contribution 0.275 1.345 -0.248 1.395 sum -2.369 -9.976 0.150 10.255 Atomic orbital electron populations 1.70233 1.07819 1.28525 1.47244 1.26471 0.96706 1.02404 0.95738 0.84765 0.77529 0.74798 0.79892 1.18367 1.19850 1.17992 1.21749 0.92431 0.81468 1.53867 0.88153 1.84039 1.34996 1.11953 1.79588 1.20027 0.91879 0.87406 0.94293 1.21277 0.92203 1.00866 1.11817 1.21334 1.00789 0.91122 0.94299 1.21092 0.93033 0.98681 1.07098 1.21105 0.94564 0.95390 0.97124 1.17238 0.81151 0.92037 1.17464 1.41085 1.03041 1.54683 1.10712 1.22354 0.91048 1.03152 0.92436 1.21740 0.96144 1.09571 0.93798 1.18978 0.90955 1.12605 0.97068 1.17914 0.89961 0.99373 0.89286 1.19354 0.97689 1.10382 0.92965 1.20029 0.93835 1.00081 0.85957 1.98302 1.96438 1.87293 1.22672 1.20070 0.94806 1.15344 0.96973 1.16817 0.85123 0.90524 0.90388 1.42156 1.02464 1.74982 1.19236 0.92111 0.85736 0.82838 0.82031 0.83581 0.79287 0.80330 0.89200 0.83316 0.76054 0.75858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -55.85 13.67 21.61 0.30 -55.55 16 2 C -0.01 -0.77 5.49 84.83 0.47 -0.31 16 3 Si 1.01 43.33 29.55 68.60 2.03 45.35 16 4 H -0.26 -10.54 7.11 99.48 0.71 -9.83 16 5 H -0.27 -11.41 7.11 99.48 0.71 -10.71 16 6 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 7 C -0.42 -24.23 9.49 67.92 0.64 -23.59 16 8 H 0.10 5.30 5.21 -2.91 -0.02 5.29 16 9 O -0.20 -11.89 9.15 -22.79 -0.21 -12.10 16 10 C 0.12 5.74 6.63 22.69 0.15 5.89 16 11 C -0.24 -10.09 9.16 22.37 0.20 -9.89 16 12 C -0.06 -1.79 10.04 22.28 0.22 -1.57 16 13 C -0.18 -5.04 10.04 22.28 0.22 -4.82 16 14 C -0.06 -2.05 9.88 22.37 0.22 -1.83 16 15 C 0.01 0.51 5.63 38.23 0.22 0.72 16 16 N -0.42 -17.73 2.64 -338.52 -0.90 -18.62 16 17 C 0.03 1.16 11.18 82.94 0.93 2.09 16 18 C -0.19 -6.07 10.85 23.51 0.26 -5.81 16 19 C -0.19 -7.23 6.27 -20.09 -0.13 -7.36 16 20 C 0.14 6.45 6.34 38.98 0.25 6.70 16 21 C -0.18 -8.46 9.72 22.42 0.22 -8.24 16 22 C 0.03 1.21 6.31 22.33 0.14 1.35 16 23 Cl -0.08 -2.80 28.93 -2.72 -0.08 -2.88 16 24 C -0.25 -8.68 9.65 22.44 0.22 -8.47 16 25 C 0.28 9.36 6.78 38.42 0.26 9.62 16 26 N -0.85 -18.92 9.09 -50.99 -0.46 -19.39 16 27 H 0.27 15.54 8.31 -92.70 -0.77 14.77 16 28 H 0.12 5.29 5.64 -2.91 -0.02 5.27 16 29 H 0.15 3.56 8.06 -2.91 -0.02 3.53 16 30 H 0.16 3.11 8.06 -2.91 -0.02 3.09 16 31 H 0.15 3.92 8.06 -2.91 -0.02 3.90 16 32 H 0.19 5.17 8.06 -2.91 -0.02 5.14 16 33 H 0.18 4.09 8.06 -2.91 -0.02 4.06 16 34 H 0.09 4.60 8.06 -2.91 -0.02 4.58 16 35 H 0.15 4.30 8.06 -2.91 -0.02 4.28 16 36 H 0.41 7.45 8.66 -92.70 -0.80 6.64 16 37 H 0.41 6.91 8.84 -92.71 -0.82 6.09 16 Total: -1.00 -76.77 340.87 4.70 -72.08 By element: Atomic # 1 Polarization: 37.07 SS G_CDS: -0.47 Total: 36.60 kcal Atomic # 6 Polarization: -49.98 SS G_CDS: 4.49 Total: -45.49 kcal Atomic # 7 Polarization: -92.50 SS G_CDS: -1.06 Total: -93.56 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.21 Total: -12.10 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 17 Polarization: -2.80 SS G_CDS: -0.08 Total: -2.88 kcal Total: -76.77 4.70 -72.08 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212602689.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.560 kcal (2) G-P(sol) polarization free energy of solvation -76.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds