Wall clock time and date at job start Tue Mar 31 2020 15:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48497 * 109.47085 * 239.99909 * 3 2 1 5 5 H 1.48500 * 109.47443 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46755 * 120.00654 * 3 2 1 7 7 C 1.38633 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00157 * 180.02562 * 7 2 1 9 9 O 1.34813 * 119.99921 * 0.02562 * 7 2 1 10 10 C 1.35765 * 116.99856 * 185.06665 * 9 7 2 11 11 C 1.38757 * 120.10339 * 354.39220 * 10 9 7 12 12 C 1.38151 * 120.00011 * 180.27441 * 11 10 9 13 13 C 1.38359 * 120.20237 * 359.74772 * 12 11 10 14 14 C 1.38177 * 120.20814 * 359.97438 * 13 12 11 15 15 C 1.38738 * 119.99488 * 0.02562 * 14 13 12 16 16 N 1.40083 * 120.09968 * 179.97438 * 15 14 13 17 17 C 1.36896 * 125.10413 * 65.04344 * 16 15 14 18 18 C 1.34284 * 109.88551 * 179.97438 * 17 16 15 19 19 C 1.46511 * 107.06660 * 359.97438 * 18 17 16 20 20 C 1.39817 * 133.91065 * 180.02562 * 19 18 17 21 21 C 1.37717 * 119.77503 * 180.02562 * 20 19 18 22 22 Cl 1.73599 * 119.79082 * 179.97438 * 21 20 19 23 23 C 1.38891 * 120.42139 * 359.97438 * 21 20 19 24 24 C 1.38366 * 120.56391 * 0.02562 * 23 21 20 25 25 N 1.39799 * 120.09622 * 179.97438 * 24 23 21 26 26 C 1.38065 * 125.10144 * 244.99637 * 16 15 14 27 27 H 0.97003 * 119.99489 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99917 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.90022 * 179.76870 * 12 11 10 30 30 H 1.08003 * 119.89649 * 180.02562 * 13 12 11 31 31 H 1.07995 * 120.00480 * 179.97438 * 14 13 12 32 32 H 1.08000 * 125.05958 * 359.93865 * 17 16 15 33 33 H 1.08005 * 126.46430 * 180.02562 * 18 17 16 34 34 H 1.07993 * 120.11266 * 359.97404 * 20 19 18 35 35 H 1.07997 * 119.71150 * 179.72565 * 23 21 20 36 36 H 0.97007 * 119.99520 * 359.97438 * 25 24 23 37 37 H 0.96998 * 120.00427 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6962 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3348 -2.3681 -0.0016 10 6 2.0701 -3.5044 0.1048 11 6 3.4561 -3.4404 0.0912 12 6 4.2022 -4.5985 0.1938 13 6 3.5717 -5.8241 0.3156 14 6 2.1920 -5.8972 0.3359 15 6 1.4345 -4.7394 0.2334 16 7 0.0357 -4.8110 0.2531 17 6 -0.7164 -5.2255 1.3193 18 6 -2.0211 -5.1734 1.0057 19 6 -2.1128 -4.6856 -0.3728 20 6 -3.1779 -4.4245 -1.2401 21 6 -2.9262 -3.9598 -2.5118 22 17 -4.2483 -3.6360 -3.5893 23 6 -1.6212 -3.7484 -2.9379 24 6 -0.5554 -4.0017 -2.0927 25 7 0.7542 -3.7860 -2.5318 26 6 -0.7915 -4.4734 -0.7995 27 1 -0.4849 0.8401 0.0004 28 1 3.9516 -2.4854 -0.0037 29 1 5.2809 -4.5472 0.1793 30 1 4.1598 -6.7264 0.3960 31 1 1.7033 -6.8556 0.4307 32 1 -0.3195 -5.5471 2.2708 33 1 -2.8469 -5.4400 1.6486 34 1 -4.1945 -4.5874 -0.9142 35 1 -1.4367 -3.3880 -3.9391 36 1 0.9167 -3.4587 -3.4304 37 1 1.5004 -3.9644 -1.9383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212604776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:01 Heat of formation + Delta-G solvation = 63.570904 kcal Electronic energy + Delta-G solvation = -25512.399102 eV Core-core repulsion = 21860.938425 eV Total energy + Delta-G solvation = -3651.460676 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.11118 -39.10770 -37.18641 -36.54453 -35.78397 -33.99712 -32.50826 -31.55814 -29.47492 -28.69998 -28.40970 -26.97997 -25.57972 -22.54656 -22.18337 -21.72684 -20.99945 -19.61110 -18.24216 -17.92121 -16.63794 -16.36782 -15.94047 -15.31525 -15.12830 -14.85724 -14.33232 -14.26236 -14.08819 -13.74507 -13.56606 -13.21687 -12.88196 -12.61745 -12.27130 -12.11910 -11.88454 -11.78057 -11.47631 -11.27263 -11.18667 -11.05799 -10.99455 -10.92830 -10.61613 -10.42911 -9.79986 -9.64765 -9.04382 -8.64371 -8.15643 -7.61467 -7.51943 -6.62398 -6.41749 -4.22849 1.58590 1.85444 1.99195 2.10022 2.67343 3.00501 3.02057 3.06093 3.26727 3.42886 3.78180 4.14553 4.37576 4.53715 4.81038 4.95193 5.21973 5.27395 5.36333 5.50150 5.65501 5.76908 5.83359 5.92503 6.03737 6.14414 6.19571 6.34461 6.37440 6.44658 6.62924 6.71783 6.80643 6.91423 7.00073 7.08270 7.14428 7.28429 7.35834 7.63553 7.74491 8.01700 8.09179 8.31888 8.78488 9.39873 10.51362 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.009621 B = 0.005848 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.453622 B = 4787.095450 C = 6563.515394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.047 3.953 3 Si 0.941 3.059 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.401 4.401 8 H 0.093 0.907 9 O -0.142 6.142 10 C 0.144 3.856 11 C -0.232 4.232 12 C -0.060 4.060 13 C -0.211 4.211 14 C -0.060 4.060 15 C 0.013 3.987 16 N -0.400 5.400 17 C 0.067 3.933 18 C -0.217 4.217 19 C -0.057 4.057 20 C -0.133 4.133 21 C 0.000 4.000 22 Cl -0.094 7.094 23 C -0.209 4.209 24 C 0.265 3.735 25 N -0.866 5.866 26 C 0.059 3.941 27 H 0.274 0.726 28 H 0.135 0.865 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.119 0.881 32 H 0.162 0.838 33 H 0.144 0.856 34 H 0.122 0.878 35 H 0.125 0.875 36 H 0.393 0.607 37 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.198 -8.485 -1.608 8.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.466 5.466 2 C -0.161 4.161 3 Si 0.765 3.235 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.194 1.194 7 C -0.476 4.476 8 H 0.111 0.889 9 O -0.043 6.043 10 C 0.086 3.914 11 C -0.252 4.252 12 C -0.078 4.078 13 C -0.231 4.231 14 C -0.080 4.080 15 C -0.078 4.078 16 N -0.077 5.077 17 C -0.060 4.060 18 C -0.242 4.242 19 C -0.064 4.064 20 C -0.155 4.155 21 C -0.028 4.028 22 Cl -0.065 7.065 23 C -0.236 4.236 24 C 0.157 3.843 25 N -0.405 5.405 26 C -0.049 4.049 27 H 0.085 0.915 28 H 0.152 0.848 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.137 0.863 32 H 0.180 0.820 33 H 0.162 0.838 34 H 0.140 0.860 35 H 0.143 0.857 36 H 0.221 0.779 37 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges 0.924 -8.185 -1.700 8.410 hybrid contribution 0.878 1.153 -0.071 1.451 sum 1.802 -7.031 -1.770 7.471 Atomic orbital electron populations 1.70069 1.05877 1.28269 1.42381 1.25336 0.95845 0.98887 0.96034 0.85791 0.78819 0.79670 0.79265 1.19381 1.20054 1.19378 1.21312 0.91795 0.80574 1.53957 0.88931 1.84079 1.33760 1.11064 1.75348 1.19358 0.90480 0.87402 0.94170 1.21117 0.92820 0.99565 1.11728 1.20910 0.98986 0.92149 0.95805 1.20488 0.93366 0.97471 1.11782 1.20740 0.93829 0.95630 0.97763 1.16801 0.80620 0.91731 1.18690 1.40725 1.02686 1.54108 1.10150 1.21791 0.90760 1.01611 0.91823 1.21442 0.95311 1.12454 0.95001 1.18684 0.90737 1.02530 0.94400 1.19844 0.97890 1.06072 0.91650 1.19982 0.87302 1.04284 0.91206 1.98301 1.48331 1.94527 1.65388 1.19725 0.89363 1.13948 1.00528 1.16522 0.85669 0.93120 0.89011 1.42620 1.04408 1.75392 1.18112 1.17819 0.89980 1.07838 0.89231 0.91540 0.84757 0.86777 0.86700 0.86296 0.82043 0.83810 0.85973 0.85733 0.77937 0.76877 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -23.55 13.67 55.48 0.76 -22.79 16 2 C 0.05 1.22 5.49 -17.52 -0.10 1.13 16 3 Si 0.94 19.54 29.55 -169.99 -5.02 14.52 16 4 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.40 -10.34 9.49 30.88 0.29 -10.05 16 8 H 0.09 2.18 5.21 -52.49 -0.27 1.91 16 9 O -0.14 -3.68 8.76 0.05 0.00 -3.68 16 10 C 0.14 3.13 4.48 -38.92 -0.17 2.95 16 11 C -0.23 -4.43 9.16 -39.42 -0.36 -4.79 16 12 C -0.06 -0.94 10.04 -39.57 -0.40 -1.34 16 13 C -0.21 -3.17 10.04 -39.56 -0.40 -3.57 16 14 C -0.06 -0.99 9.88 -39.42 -0.39 -1.38 16 15 C 0.01 0.25 4.52 -83.44 -0.38 -0.12 16 16 N -0.40 -8.09 2.64 -58.24 -0.15 -8.25 16 17 C 0.07 1.19 11.17 -16.69 -0.19 1.01 16 18 C -0.22 -3.79 11.08 -37.64 -0.42 -4.21 16 19 C -0.06 -1.14 6.37 -105.14 -0.67 -1.81 16 20 C -0.13 -2.47 9.87 -39.18 -0.39 -2.86 16 21 C 0.00 0.00 6.31 -39.53 -0.25 -0.25 16 22 Cl -0.09 -1.50 28.94 -51.86 -1.50 -3.00 16 23 C -0.21 -4.00 9.64 -39.29 -0.38 -4.38 16 24 C 0.26 5.46 6.77 -83.65 -0.57 4.89 16 25 N -0.87 -16.54 8.70 32.48 0.28 -16.26 16 26 C 0.06 1.25 6.36 -83.69 -0.53 0.72 16 27 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 28 H 0.13 2.56 5.64 -52.49 -0.30 2.26 16 29 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.11 1.40 8.06 -52.48 -0.42 0.97 16 31 H 0.12 1.73 8.06 -52.49 -0.42 1.30 16 32 H 0.16 2.33 8.06 -52.49 -0.42 1.90 16 33 H 0.14 2.04 8.06 -52.48 -0.42 1.62 16 34 H 0.12 1.98 8.06 -52.49 -0.42 1.56 16 35 H 0.12 2.14 8.06 -52.49 -0.42 1.71 16 36 H 0.39 6.45 8.84 -40.82 -0.36 6.09 16 37 H 0.40 7.94 4.73 -40.82 -0.19 7.75 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -29.70 333.38 -9.12 -38.82 By element: Atomic # 1 Polarization: 22.89 SS G_CDS: -3.22 Total: 19.68 kcal Atomic # 6 Polarization: -18.78 SS G_CDS: -5.29 Total: -24.07 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.89 Total: -47.30 kcal Atomic # 8 Polarization: -3.68 SS G_CDS: 0.00 Total: -3.68 kcal Atomic # 14 Polarization: 19.54 SS G_CDS: -5.02 Total: 14.52 kcal Atomic # 17 Polarization: -1.50 SS G_CDS: -1.50 Total: -3.00 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.70 -9.12 -38.82 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.391 kcal (2) G-P(sol) polarization free energy of solvation -29.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds