Wall clock time and date at job start Tue Mar 31 2020 15:28:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31577 * 1 3 3 Si 1.86797 * 119.99935 * 2 1 4 4 H 1.48497 * 109.47085 * 239.99909 * 3 2 1 5 5 H 1.48500 * 109.47443 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46755 * 120.00654 * 3 2 1 7 7 C 1.38633 * 119.99875 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00157 * 180.02562 * 7 2 1 9 9 O 1.34813 * 119.99921 * 0.02562 * 7 2 1 10 10 C 1.35765 * 116.99856 * 185.06665 * 9 7 2 11 11 C 1.38757 * 120.10339 * 354.39220 * 10 9 7 12 12 C 1.38151 * 120.00011 * 180.27441 * 11 10 9 13 13 C 1.38359 * 120.20237 * 359.74772 * 12 11 10 14 14 C 1.38177 * 120.20814 * 359.97438 * 13 12 11 15 15 C 1.38738 * 119.99488 * 0.02562 * 14 13 12 16 16 N 1.40083 * 120.09968 * 179.97438 * 15 14 13 17 17 C 1.36896 * 125.10413 * 65.04344 * 16 15 14 18 18 C 1.34284 * 109.88551 * 179.97438 * 17 16 15 19 19 C 1.46511 * 107.06660 * 359.97438 * 18 17 16 20 20 C 1.39817 * 133.91065 * 180.02562 * 19 18 17 21 21 C 1.37717 * 119.77503 * 180.02562 * 20 19 18 22 22 Cl 1.73599 * 119.79082 * 179.97438 * 21 20 19 23 23 C 1.38891 * 120.42139 * 359.97438 * 21 20 19 24 24 C 1.38366 * 120.56391 * 0.02562 * 23 21 20 25 25 N 1.39799 * 120.09622 * 179.97438 * 24 23 21 26 26 C 1.38065 * 125.10144 * 244.99637 * 16 15 14 27 27 H 0.97003 * 119.99489 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99917 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.90022 * 179.76870 * 12 11 10 30 30 H 1.08003 * 119.89649 * 180.02562 * 13 12 11 31 31 H 1.07995 * 120.00480 * 179.97438 * 14 13 12 32 32 H 1.08000 * 125.05958 * 359.93865 * 17 16 15 33 33 H 1.08005 * 126.46430 * 180.02562 * 18 17 16 34 34 H 1.07993 * 120.11266 * 359.97404 * 20 19 18 35 35 H 1.07997 * 119.71150 * 179.72565 * 23 21 20 36 36 H 0.97007 * 119.99520 * 359.97438 * 25 24 23 37 37 H 0.96998 * 120.00427 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3158 0.0000 0.0000 3 14 2.2497 1.6177 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2848 2.7465 0.0006 6 1 3.1036 1.6962 1.2124 7 6 2.0089 -1.2006 -0.0005 8 1 3.0888 -1.2007 -0.0001 9 8 1.3348 -2.3681 -0.0016 10 6 2.0701 -3.5044 0.1048 11 6 3.4561 -3.4404 0.0912 12 6 4.2022 -4.5985 0.1938 13 6 3.5717 -5.8241 0.3156 14 6 2.1920 -5.8972 0.3359 15 6 1.4345 -4.7394 0.2334 16 7 0.0357 -4.8110 0.2531 17 6 -0.7164 -5.2255 1.3193 18 6 -2.0211 -5.1734 1.0057 19 6 -2.1128 -4.6856 -0.3728 20 6 -3.1779 -4.4245 -1.2401 21 6 -2.9262 -3.9598 -2.5118 22 17 -4.2483 -3.6360 -3.5893 23 6 -1.6212 -3.7484 -2.9379 24 6 -0.5554 -4.0017 -2.0927 25 7 0.7542 -3.7860 -2.5318 26 6 -0.7915 -4.4734 -0.7995 27 1 -0.4849 0.8401 0.0004 28 1 3.9516 -2.4854 -0.0037 29 1 5.2809 -4.5472 0.1793 30 1 4.1598 -6.7264 0.3960 31 1 1.7033 -6.8556 0.4307 32 1 -0.3195 -5.5471 2.2708 33 1 -2.8469 -5.4400 1.6486 34 1 -4.1945 -4.5874 -0.9142 35 1 -1.4367 -3.3880 -3.9391 36 1 0.9167 -3.4587 -3.4304 37 1 1.5004 -3.9644 -1.9383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212604776.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:01 Heat of formation + Delta-G solvation = 47.790794 kcal Electronic energy + Delta-G solvation = -25513.083379 eV Core-core repulsion = 21860.938425 eV Total energy + Delta-G solvation = -3652.144953 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.54997 -40.63346 -38.66092 -38.02777 -37.17864 -35.44013 -34.31250 -32.98539 -30.91566 -30.17092 -29.84208 -28.45453 -27.35261 -23.98159 -23.66835 -23.19661 -22.44063 -21.04146 -19.90146 -19.43479 -18.17866 -17.84756 -17.43430 -16.79590 -16.59579 -16.41474 -15.78420 -15.68872 -15.60847 -15.29297 -15.07063 -14.66623 -14.45118 -13.94974 -13.71705 -13.60530 -13.48408 -13.21006 -12.95673 -12.68035 -12.60946 -12.56440 -12.43692 -12.32884 -12.20892 -11.78180 -11.40452 -11.13113 -10.83398 -10.04058 -9.58869 -9.10340 -9.02403 -8.46954 -7.88298 -6.14992 0.16365 0.40355 0.56502 0.63048 1.26276 1.31657 1.40867 1.46571 1.85395 2.01708 2.13322 2.70598 2.88791 3.03750 3.10793 3.35097 3.78526 3.93778 4.05412 4.20087 4.25623 4.41797 4.45364 4.53175 4.63838 4.71554 4.79236 4.93909 4.99661 5.01915 5.08464 5.20300 5.42972 5.45671 5.49132 5.63760 5.73511 5.86937 5.92851 5.99445 6.18982 6.54522 6.65032 6.88285 6.95419 7.70732 8.71705 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.009621 B = 0.005848 C = 0.004265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2909.453622 B = 4787.095450 C = 6563.515394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C -0.012 4.012 3 Si 1.009 2.991 4 H -0.258 1.258 5 H -0.279 1.279 6 H -0.258 1.258 7 C -0.413 4.413 8 H 0.103 0.897 9 O -0.192 6.192 10 C 0.118 3.882 11 C -0.242 4.242 12 C -0.054 4.054 13 C -0.179 4.179 14 C -0.063 4.063 15 C 0.006 3.994 16 N -0.412 5.412 17 C 0.056 3.944 18 C -0.216 4.216 19 C -0.080 4.080 20 C -0.138 4.138 21 C -0.009 4.009 22 Cl -0.072 7.072 23 C -0.219 4.219 24 C 0.242 3.758 25 N -0.865 5.865 26 C 0.026 3.974 27 H 0.269 0.731 28 H 0.128 0.872 29 H 0.154 0.846 30 H 0.161 0.839 31 H 0.144 0.856 32 H 0.193 0.807 33 H 0.176 0.824 34 H 0.144 0.856 35 H 0.136 0.864 36 H 0.401 0.599 37 H 0.395 0.605 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -10.694 -1.017 11.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.212 4.212 3 Si 0.829 3.171 4 H -0.182 1.182 5 H -0.204 1.204 6 H -0.182 1.182 7 C -0.489 4.489 8 H 0.120 0.880 9 O -0.096 6.096 10 C 0.065 3.935 11 C -0.262 4.262 12 C -0.072 4.072 13 C -0.198 4.198 14 C -0.082 4.082 15 C -0.085 4.085 16 N -0.089 5.089 17 C -0.070 4.070 18 C -0.241 4.241 19 C -0.087 4.087 20 C -0.160 4.160 21 C -0.037 4.037 22 Cl -0.043 7.043 23 C -0.246 4.246 24 C 0.135 3.865 25 N -0.405 5.405 26 C -0.081 4.081 27 H 0.078 0.922 28 H 0.145 0.855 29 H 0.172 0.828 30 H 0.178 0.822 31 H 0.161 0.839 32 H 0.210 0.790 33 H 0.194 0.806 34 H 0.162 0.838 35 H 0.154 0.846 36 H 0.230 0.770 37 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 2.833 -10.455 -1.113 10.889 hybrid contribution 0.433 1.430 -0.246 1.514 sum 3.266 -9.025 -1.359 9.693 Atomic orbital electron populations 1.70238 1.07825 1.28495 1.47065 1.26420 0.96575 1.02377 0.95872 0.84778 0.77448 0.75005 0.79855 1.18190 1.20376 1.18246 1.21707 0.92375 0.81327 1.53521 0.87951 1.84081 1.34754 1.11747 1.79056 1.19894 0.91710 0.87283 0.94661 1.21302 0.92125 1.00892 1.11834 1.21358 1.00899 0.91044 0.93885 1.21090 0.92919 0.98805 1.07025 1.21131 0.94609 0.95483 0.96956 1.17245 0.80997 0.92119 1.18162 1.40927 1.02987 1.54460 1.10507 1.22414 0.90965 1.01211 0.92397 1.21876 0.96327 1.11619 0.94257 1.19181 0.90740 1.02904 0.95828 1.20141 0.98689 1.05561 0.91562 1.20131 0.87807 1.03959 0.91778 1.98298 1.47041 1.94373 1.64625 1.19973 0.89647 1.13906 1.01032 1.16819 0.86362 0.93822 0.89546 1.42569 1.03987 1.75585 1.18403 1.18209 0.91080 1.08883 0.89958 0.92208 0.85465 0.82790 0.82180 0.83854 0.78973 0.80636 0.83849 0.84580 0.77034 0.77372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.05 13.67 21.61 0.30 -53.75 16 2 C -0.01 -0.67 5.49 84.83 0.47 -0.21 16 3 Si 1.01 41.57 29.55 68.60 2.03 43.59 16 4 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 5 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 6 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 7 C -0.41 -22.24 9.49 67.91 0.64 -21.60 16 8 H 0.10 4.99 5.21 -2.91 -0.02 4.97 16 9 O -0.19 -10.41 8.76 -22.73 -0.20 -10.61 16 10 C 0.12 5.19 4.48 22.69 0.10 5.29 16 11 C -0.24 -8.95 9.16 22.37 0.21 -8.74 16 12 C -0.05 -1.47 10.04 22.28 0.22 -1.25 16 13 C -0.18 -4.45 10.04 22.28 0.22 -4.23 16 14 C -0.06 -1.86 9.88 22.37 0.22 -1.64 16 15 C 0.01 0.22 4.52 38.24 0.17 0.40 16 16 N -0.41 -16.65 2.64 -338.16 -0.89 -17.54 16 17 C 0.06 1.94 11.17 83.00 0.93 2.86 16 18 C -0.22 -7.38 11.08 23.52 0.26 -7.12 16 19 C -0.08 -3.23 6.37 -20.20 -0.13 -3.36 16 20 C -0.14 -5.15 9.87 22.53 0.22 -4.93 16 21 C -0.01 -0.32 6.31 22.30 0.14 -0.18 16 22 Cl -0.07 -2.26 28.94 -2.72 -0.08 -2.34 16 23 C -0.22 -8.65 9.64 22.46 0.22 -8.43 16 24 C 0.24 10.36 6.77 38.25 0.26 10.62 16 25 N -0.87 -34.36 8.70 -51.16 -0.45 -34.80 16 26 C 0.03 1.13 6.36 39.05 0.25 1.38 16 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.13 4.82 5.64 -2.91 -0.02 4.81 16 29 H 0.15 3.04 8.06 -2.91 -0.02 3.02 16 30 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 31 H 0.14 3.57 8.06 -2.91 -0.02 3.55 16 32 H 0.19 5.14 8.06 -2.91 -0.02 5.12 16 33 H 0.18 4.63 8.06 -2.91 -0.02 4.60 16 34 H 0.14 4.54 8.06 -2.91 -0.02 4.52 16 35 H 0.14 4.82 8.06 -2.91 -0.02 4.79 16 36 H 0.40 13.79 8.84 -92.70 -0.82 12.97 16 37 H 0.40 16.17 4.73 -92.71 -0.44 15.73 16 Total: -1.00 -69.62 333.38 5.01 -64.62 By element: Atomic # 1 Polarization: 52.07 SS G_CDS: -0.10 Total: 51.96 kcal Atomic # 6 Polarization: -45.53 SS G_CDS: 4.40 Total: -41.12 kcal Atomic # 7 Polarization: -105.05 SS G_CDS: -1.04 Total: -106.09 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: -0.20 Total: -10.61 kcal Atomic # 14 Polarization: 41.57 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 17 Polarization: -2.26 SS G_CDS: -0.08 Total: -2.34 kcal Total: -69.62 5.01 -64.62 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212604776.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.408 kcal (2) G-P(sol) polarization free energy of solvation -69.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.617 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds