Wall clock time and date at job start Tue Mar 31 2020 14:36:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31591 * 1 3 3 Si 1.86797 * 120.00166 * 2 1 4 4 H 1.48494 * 109.47229 * 270.00407 * 3 2 1 5 5 H 1.48498 * 109.46953 * 30.00735 * 3 2 1 6 6 H 1.48501 * 109.46709 * 149.99991 * 3 2 1 7 7 C 1.38606 * 119.99724 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00062 * 179.97438 * 7 2 1 9 9 O 1.34823 * 120.00144 * 359.97438 * 7 2 1 10 10 C 1.35777 * 116.99825 * 174.61149 * 9 7 2 11 11 C 1.38919 * 119.99123 * 186.54845 * 10 9 7 12 12 C 1.37994 * 120.01103 * 179.72920 * 11 10 9 13 13 C 1.38988 * 119.98431 * 0.54200 * 12 11 10 14 14 N 1.39757 * 120.00232 * 179.70485 * 13 12 11 15 15 C 1.39911 * 120.00049 * 329.16169 * 14 13 12 16 16 C 1.39326 * 120.09556 * 333.76501 * 15 14 13 17 17 C 1.36109 * 120.67099 * 179.71386 * 16 15 14 18 18 C 1.41105 * 120.66220 * 0.56703 * 17 16 15 19 19 N 1.34956 * 128.70866 * 179.74106 * 18 17 16 20 20 C 1.28611 * 117.92644 * 179.97438 * 19 18 17 21 21 O 1.35363 * 124.79784 * 179.97438 * 20 19 18 22 22 S 1.75798 * 110.40533 * 359.97438 * 20 19 18 23 23 C 1.39789 * 118.47484 * 359.71953 * 18 17 16 24 24 C 1.38353 * 120.09388 * 154.04585 * 15 14 13 25 25 C 1.38980 * 119.98977 * 359.72854 * 13 12 11 26 26 C 1.37996 * 119.98906 * 359.97438 * 25 13 12 27 27 H 0.97001 * 119.99855 * 359.97438 * 1 2 3 28 28 H 1.08001 * 119.99520 * 359.97235 * 11 10 9 29 29 H 1.07997 * 120.00396 * 180.25090 * 12 11 10 30 30 H 0.97005 * 119.99989 * 149.15579 * 14 13 12 31 31 H 1.07999 * 119.66474 * 0.02562 * 16 15 14 32 32 H 1.07995 * 119.66903 * 180.28386 * 17 16 15 33 33 H 0.96706 * 113.99615 * 0.02562 * 21 20 19 34 34 H 1.07998 * 120.00836 * 0.02562 * 24 15 14 35 35 H 1.07994 * 120.00482 * 179.97438 * 25 13 12 36 36 H 1.07996 * 119.99441 * 180.02562 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3159 0.0000 0.0000 3 14 2.2499 1.6177 0.0000 4 1 2.4974 2.0464 -1.4000 5 1 1.4475 2.6526 0.7002 6 1 3.5475 1.4400 0.7001 7 6 2.0089 -1.2004 -0.0005 8 1 3.0888 -1.2005 -0.0010 9 8 1.3347 -2.3680 -0.0005 10 6 2.0696 -3.5040 -0.1147 11 6 1.4338 -4.7308 -0.2585 12 6 2.1803 -5.8850 -0.3801 13 6 3.5683 -5.8211 -0.3475 14 7 4.3246 -6.9906 -0.4645 15 6 3.8172 -8.2028 0.0156 16 6 2.8830 -8.2087 1.0493 17 6 2.3773 -9.3809 1.5214 18 6 2.7976 -10.6151 0.9818 19 7 2.4117 -11.8618 1.3257 20 6 2.9331 -12.8506 0.6899 21 8 2.6481 -14.1537 0.9202 22 16 4.0686 -12.2708 -0.5205 23 6 3.7393 -10.6048 -0.0512 24 6 4.2459 -9.3994 -0.5308 25 6 4.2040 -4.5943 -0.1980 26 6 3.4569 -3.4399 -0.0825 27 1 -0.4850 0.8401 0.0004 28 1 0.3551 -4.7807 -0.2790 29 1 1.6859 -6.8381 -0.4960 30 1 5.2013 -6.9618 -0.8786 31 1 2.5530 -7.2735 1.4769 32 1 1.6506 -9.3664 2.3201 33 1 1.9994 -14.2961 1.6232 34 1 4.9736 -9.3987 -1.3288 35 1 5.2825 -4.5445 -0.1721 36 1 3.9507 -2.4865 0.0332 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212608822.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:36:33 Heat of formation + Delta-G solvation = 29.513419 kcal Electronic energy + Delta-G solvation = -23207.039138 eV Core-core repulsion = 19556.145324 eV Total energy + Delta-G solvation = -3650.893813 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.067 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.61441 -39.48279 -38.64946 -37.47051 -35.94265 -33.80365 -32.24610 -31.25194 -30.42297 -28.84322 -27.19837 -25.36091 -24.43468 -23.32628 -22.13029 -21.87089 -20.96670 -18.80932 -18.49228 -18.11917 -17.44320 -17.13669 -16.33046 -15.71668 -15.48633 -14.93154 -14.64927 -14.58530 -14.40414 -13.99675 -13.82505 -13.63241 -13.39663 -13.03157 -12.83427 -12.81669 -12.51760 -12.22044 -11.70651 -11.52225 -11.38829 -11.05283 -10.97983 -10.77667 -10.49916 -10.27547 -10.05054 -9.79910 -9.41784 -8.85465 -8.41636 -8.34571 -7.91120 -6.67564 -6.49768 -4.07563 0.44782 0.56723 1.06933 1.42181 2.02045 2.03778 2.43327 3.09207 3.10314 3.14934 3.30987 3.46498 3.63610 3.92200 4.28814 4.45386 4.63461 5.02196 5.05931 5.13840 5.21285 5.29989 5.44870 5.55946 5.64897 5.75821 5.97421 6.04620 6.08834 6.19342 6.30676 6.47184 6.67478 6.72552 6.81259 6.92272 7.14114 7.23820 7.39798 7.43617 7.68417 7.85912 7.94028 8.95454 9.64575 10.67884 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.039829 B = 0.002095 C = 0.002025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.828835 B =13362.399378 C =13823.534542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.861 5.861 2 C 0.039 3.961 3 Si 0.941 3.059 4 H -0.273 1.273 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.391 4.391 8 H 0.092 0.908 9 O -0.176 6.176 10 C 0.138 3.862 11 C -0.165 4.165 12 C -0.105 4.105 13 C 0.061 3.939 14 N -0.672 5.672 15 C 0.226 3.774 16 C -0.143 4.143 17 C -0.034 4.034 18 C 0.056 3.944 19 N -0.520 5.520 20 C 0.282 3.718 21 O -0.436 6.436 22 S 0.109 5.891 23 C -0.141 4.141 24 C -0.148 4.148 25 C -0.100 4.100 26 C -0.209 4.209 27 H 0.270 0.730 28 H 0.122 0.878 29 H 0.118 0.882 30 H 0.405 0.595 31 H 0.145 0.855 32 H 0.135 0.865 33 H 0.411 0.589 34 H 0.129 0.871 35 H 0.111 0.889 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.418 -20.677 0.334 22.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.496 5.496 2 C -0.166 4.166 3 Si 0.766 3.234 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.192 1.192 7 C -0.468 4.468 8 H 0.109 0.891 9 O -0.080 6.080 10 C 0.084 3.916 11 C -0.185 4.185 12 C -0.126 4.126 13 C -0.033 4.033 14 N -0.294 5.294 15 C 0.120 3.880 16 C -0.166 4.166 17 C -0.055 4.055 18 C -0.062 4.062 19 N -0.252 5.252 20 C -0.043 4.043 21 O -0.235 6.235 22 S 0.355 5.645 23 C -0.260 4.260 24 C -0.177 4.177 25 C -0.121 4.121 26 C -0.229 4.229 27 H 0.080 0.920 28 H 0.140 0.860 29 H 0.135 0.865 30 H 0.240 0.760 31 H 0.162 0.838 32 H 0.153 0.847 33 H 0.268 0.732 34 H 0.147 0.853 35 H 0.129 0.871 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 8.496 -21.257 -0.350 22.895 hybrid contribution 0.145 1.435 0.662 1.587 sum 8.641 -19.823 0.311 21.626 Atomic orbital electron populations 1.70049 1.05941 1.27735 1.45852 1.25290 0.95862 0.98862 0.96551 0.85711 0.78910 0.80087 0.78726 1.19871 1.20244 1.19205 1.21299 0.91749 0.80826 1.52886 0.89085 1.83987 1.34244 1.11381 1.78374 1.19368 0.90198 0.88225 0.93811 1.20083 0.99682 0.89839 1.08913 1.20525 0.91775 0.97681 1.02597 1.17226 0.90506 0.85079 1.10477 1.41926 1.20084 1.03557 1.63845 1.17547 0.93818 0.85327 0.91316 1.20715 1.00092 0.98990 0.96824 1.20196 0.98445 0.88151 0.98740 1.18379 0.99263 0.90267 0.98288 1.66471 1.29599 0.98842 1.30310 1.24910 0.96388 0.87488 0.95470 1.85077 1.63140 1.16506 1.58727 1.84905 1.44556 0.97048 1.37954 1.23154 1.03636 0.96800 1.02360 1.19603 1.06430 0.88355 1.03302 1.20458 0.98584 0.91168 1.01913 1.21014 0.93694 0.98527 1.09616 0.91968 0.86017 0.86455 0.75964 0.83758 0.84673 0.73171 0.85290 0.87109 0.85106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -24.66 13.67 55.48 0.76 -23.90 16 2 C 0.04 1.04 5.49 -17.52 -0.10 0.94 16 3 Si 0.94 19.92 29.55 -169.99 -5.02 14.90 16 4 H -0.27 -5.66 7.11 56.52 0.40 -5.25 16 5 H -0.28 -5.78 7.11 56.52 0.40 -5.38 16 6 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 7 C -0.39 -10.52 9.48 30.87 0.29 -10.23 16 8 H 0.09 2.24 5.21 -52.49 -0.27 1.97 16 9 O -0.18 -4.82 9.75 -0.01 0.00 -4.82 16 10 C 0.14 3.13 6.65 -39.08 -0.26 2.87 16 11 C -0.17 -3.25 9.98 -39.42 -0.39 -3.65 16 12 C -0.11 -1.75 7.74 -39.39 -0.31 -2.06 16 13 C 0.06 0.95 5.94 -83.69 -0.50 0.45 16 14 N -0.67 -8.36 5.47 -8.36 -0.05 -8.41 16 15 C 0.23 2.79 6.03 -83.72 -0.51 2.29 16 16 C -0.14 -1.81 7.75 -39.94 -0.31 -2.12 16 17 C -0.03 -0.42 10.04 -39.26 -0.39 -0.81 16 18 C 0.06 0.73 6.94 -84.83 -0.59 0.14 16 19 N -0.52 -6.53 10.60 -11.83 -0.13 -6.66 16 20 C 0.28 3.06 8.81 51.41 0.45 3.51 16 21 O -0.44 -3.53 13.63 -17.78 -0.24 -3.77 16 22 S 0.11 1.12 23.39 -107.50 -2.51 -1.40 16 23 C -0.14 -1.70 6.52 -38.62 -0.25 -1.96 16 24 C -0.15 -1.69 9.96 -39.15 -0.39 -2.08 16 25 C -0.10 -1.66 9.95 -39.40 -0.39 -2.05 16 26 C -0.21 -4.18 9.16 -39.42 -0.36 -4.54 16 27 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 28 H 0.12 2.33 8.06 -52.49 -0.42 1.90 16 29 H 0.12 1.77 6.53 -52.49 -0.34 1.43 16 30 H 0.40 4.08 8.89 -40.82 -0.36 3.71 16 31 H 0.14 1.90 6.33 -52.49 -0.33 1.57 16 32 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 33 H 0.41 1.62 9.06 45.56 0.41 2.03 16 34 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 35 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 36 H 0.13 2.63 5.64 -52.49 -0.30 2.34 16 LS Contribution 330.06 15.07 4.97 4.97 Total: -1.00 -31.15 330.06 -8.24 -39.39 By element: Atomic # 1 Polarization: 11.00 SS G_CDS: -2.02 Total: 8.98 kcal Atomic # 6 Polarization: -15.28 SS G_CDS: -4.00 Total: -19.28 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.59 Total: -38.96 kcal Atomic # 8 Polarization: -8.35 SS G_CDS: -0.24 Total: -8.60 kcal Atomic # 14 Polarization: 19.92 SS G_CDS: -5.02 Total: 14.90 kcal Atomic # 16 Polarization: 1.12 SS G_CDS: -2.51 Total: -1.40 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.15 -8.24 -39.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212608822.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.906 kcal (2) G-P(sol) polarization free energy of solvation -31.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds