Wall clock time and date at job start Tue Mar 31 2020 15:28:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86796 * 120.00419 * 2 1 4 4 H 1.48495 * 109.47457 * 240.00392 * 3 2 1 5 5 H 1.48505 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47016 * 119.99951 * 3 2 1 7 7 C 1.38623 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99785 * 179.97438 * 7 2 1 9 9 O 1.34814 * 120.00352 * 359.97438 * 7 2 1 10 10 C 1.35767 * 117.00310 * 174.64887 * 9 7 2 11 11 C 1.38911 * 119.99886 * 0.08894 * 10 9 7 12 12 C 1.37997 * 120.00196 * 179.97438 * 11 10 9 13 13 C 1.38923 * 119.99698 * 0.02562 * 12 11 10 14 14 N 1.40089 * 120.00006 * 179.97438 * 13 12 11 15 15 C 1.36903 * 125.10983 * 301.80447 * 14 13 12 16 16 C 1.34276 * 109.89112 * 180.02562 * 15 14 13 17 17 C 1.46517 * 107.06244 * 359.97438 * 16 15 14 18 18 C 1.39823 * 133.91047 * 179.97438 * 17 16 15 19 19 C 1.37708 * 119.77940 * 180.02562 * 18 17 16 20 20 Cl 1.73594 * 119.78960 * 180.28168 * 19 18 17 21 21 C 1.38885 * 120.41828 * 0.02562 * 19 18 17 22 22 C 1.38370 * 120.56699 * 0.02562 * 21 19 18 23 23 N 1.39797 * 120.09799 * 179.97438 * 22 21 19 24 24 C 1.38075 * 125.10328 * 121.83866 * 14 13 12 25 25 C 1.38924 * 120.00141 * 0.24875 * 13 12 11 26 26 C 1.37993 * 119.99389 * 359.51864 * 25 13 12 27 27 H 0.97003 * 120.00002 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.00066 * 359.97438 * 11 10 9 29 29 H 1.08002 * 120.00181 * 180.02562 * 12 11 10 30 30 H 1.08001 * 125.05330 * 359.97438 * 15 14 13 31 31 H 1.07998 * 126.47149 * 179.97438 * 16 15 14 32 32 H 1.08005 * 120.10884 * 359.97438 * 18 17 16 33 33 H 1.07997 * 119.71733 * 179.97438 * 21 19 18 34 34 H 0.97000 * 120.00495 * 163.74923 * 23 22 21 35 35 H 0.97008 * 119.99952 * 343.75715 * 23 22 21 36 36 H 1.07998 * 120.00201 * 179.74972 * 25 13 12 37 37 H 1.08002 * 119.99539 * 180.23572 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2849 2.7464 0.0006 6 1 3.1036 1.6962 1.2126 7 6 2.0088 -1.2005 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0695 -3.5041 -0.1139 11 6 3.4524 -3.4290 -0.2212 12 6 4.1993 -4.5836 -0.3359 13 6 3.5682 -5.8211 -0.3445 14 7 4.3263 -6.9933 -0.4615 15 6 5.1705 -7.2848 -1.4991 16 6 5.7398 -8.4848 -1.3017 17 6 5.2188 -9.0045 -0.0347 18 6 5.4302 -10.1807 0.6912 19 6 4.7693 -10.3769 1.8833 20 17 5.0372 -11.8338 2.7883 21 6 3.8938 -9.4142 2.3686 22 6 3.6720 -8.2449 1.6628 23 7 2.7882 -7.2827 2.1602 24 6 4.3338 -8.0285 0.4521 25 6 2.1847 -5.8960 -0.2430 26 6 1.4383 -4.7416 -0.1235 27 1 -0.4850 0.8401 0.0004 28 1 3.9430 -2.4669 -0.2149 29 1 5.2746 -4.5252 -0.4189 30 1 5.3511 -6.6450 -2.3503 31 1 6.4479 -8.9745 -1.9537 32 1 6.1090 -10.9332 0.3177 33 1 3.3812 -9.5799 3.3046 34 1 2.8047 -6.3797 1.8061 35 1 2.1585 -7.5179 2.8596 36 1 1.6937 -6.8579 -0.2538 37 1 0.3630 -4.7999 -0.0407 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001212612049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:04 Heat of formation + Delta-G solvation = 59.301482 kcal Electronic energy + Delta-G solvation = -24079.500229 eV Core-core repulsion = 20427.854417 eV Total energy + Delta-G solvation = -3651.645812 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50120 -39.25921 -37.69405 -36.69614 -36.23129 -34.20891 -32.59542 -31.36285 -30.61601 -28.88741 -28.79053 -27.06619 -25.53930 -22.78075 -22.37600 -22.19863 -21.31702 -19.84613 -18.34780 -18.06269 -17.06788 -16.78885 -16.35739 -15.66744 -15.21591 -14.77983 -14.72111 -14.52840 -14.08903 -13.94099 -13.87710 -13.22590 -13.15500 -12.96091 -12.67009 -12.55261 -12.27299 -11.94908 -11.78253 -11.73559 -11.40115 -11.32051 -11.04782 -10.96707 -10.83381 -10.64299 -10.18256 -9.67183 -9.13597 -8.74390 -8.61084 -8.10613 -7.59561 -6.88804 -6.71711 -4.30214 1.26151 1.45990 1.79812 1.85573 2.24925 2.85231 2.98334 2.99253 3.01864 3.02994 3.75289 3.89563 3.98927 4.14273 4.76733 4.81922 4.90909 4.93446 5.19308 5.27733 5.35360 5.38842 5.58783 5.67572 5.82525 5.84271 5.91863 5.97519 6.11892 6.23191 6.43394 6.45747 6.58272 6.65292 6.73597 6.84506 6.92353 7.06012 7.22725 7.25569 7.57459 7.70901 7.73795 7.86737 8.72541 9.36021 10.44606 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.002583 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.505312 B =10838.304470 C =11354.076254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.852 5.852 2 C 0.043 3.957 3 Si 0.944 3.056 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.268 1.268 7 C -0.397 4.397 8 H 0.096 0.904 9 O -0.162 6.162 10 C 0.158 3.842 11 C -0.225 4.225 12 C -0.057 4.057 13 C -0.009 4.009 14 N -0.403 5.403 15 C 0.069 3.931 16 C -0.218 4.218 17 C -0.061 4.061 18 C -0.125 4.125 19 C -0.007 4.007 20 Cl -0.086 7.086 21 C -0.201 4.201 22 C 0.242 3.758 23 N -0.878 5.878 24 C 0.040 3.960 25 C -0.065 4.065 26 C -0.182 4.182 27 H 0.275 0.725 28 H 0.137 0.863 29 H 0.115 0.885 30 H 0.167 0.833 31 H 0.147 0.853 32 H 0.126 0.874 33 H 0.129 0.871 34 H 0.406 0.594 35 H 0.397 0.603 36 H 0.120 0.880 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.379 -14.175 0.927 16.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.485 5.485 2 C -0.163 4.163 3 Si 0.768 3.232 4 H -0.192 1.192 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.472 4.472 8 H 0.113 0.887 9 O -0.063 6.063 10 C 0.102 3.898 11 C -0.244 4.244 12 C -0.077 4.077 13 C -0.099 4.099 14 N -0.079 5.079 15 C -0.058 4.058 16 C -0.243 4.243 17 C -0.067 4.067 18 C -0.146 4.146 19 C -0.036 4.036 20 Cl -0.057 7.057 21 C -0.227 4.227 22 C 0.135 3.865 23 N -0.421 5.421 24 C -0.067 4.067 25 C -0.084 4.084 26 C -0.202 4.202 27 H 0.085 0.915 28 H 0.154 0.846 29 H 0.133 0.867 30 H 0.184 0.816 31 H 0.165 0.835 32 H 0.144 0.856 33 H 0.147 0.853 34 H 0.239 0.761 35 H 0.225 0.775 36 H 0.137 0.863 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.774 -13.755 1.029 15.834 hybrid contribution 0.267 0.981 0.147 1.027 sum 8.041 -12.774 1.176 15.140 Atomic orbital electron populations 1.70026 1.06095 1.28429 1.43922 1.25369 0.95911 0.99126 0.95912 0.85727 0.78793 0.79264 0.79436 1.19246 1.20031 1.19247 1.21359 0.91980 0.80558 1.53309 0.88692 1.83989 1.34566 1.11632 1.76104 1.19444 0.90266 0.88081 0.91980 1.21063 0.93731 0.98613 1.11035 1.20731 0.98934 0.90669 0.97328 1.17217 0.90041 0.84098 1.18529 1.41074 1.36054 1.13810 1.16987 1.21957 0.93818 0.97561 0.92496 1.21536 1.07744 0.96777 0.98269 1.18772 0.98337 0.93675 0.95915 1.19980 1.03010 0.97440 0.94193 1.20087 1.00726 0.88630 0.94118 1.98329 1.95847 1.36741 1.74805 1.19918 1.06087 0.94556 1.02144 1.16601 0.90722 0.90105 0.89062 1.42857 1.40764 1.12700 1.45815 1.18036 1.04570 0.91329 0.92806 1.20613 0.91443 0.97850 0.98526 1.20090 0.99955 0.89313 1.10860 0.91497 0.84576 0.86654 0.81586 0.83518 0.85591 0.85266 0.76140 0.77507 0.86252 0.85522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -23.22 13.67 55.48 0.76 -22.46 16 2 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 3 Si 0.94 18.92 29.55 -169.99 -5.02 13.90 16 4 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 5 H -0.28 -5.43 7.11 56.52 0.40 -5.03 16 6 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 7 C -0.40 -10.08 9.47 30.87 0.29 -9.79 16 8 H 0.10 2.20 5.20 -52.48 -0.27 1.93 16 9 O -0.16 -4.16 9.75 0.04 0.00 -4.16 16 10 C 0.16 3.36 6.66 -39.08 -0.26 3.10 16 11 C -0.22 -4.27 9.16 -39.42 -0.36 -4.63 16 12 C -0.06 -0.94 9.78 -39.42 -0.39 -1.33 16 13 C -0.01 -0.14 4.70 -83.58 -0.39 -0.53 16 14 N -0.40 -6.10 2.85 -58.34 -0.17 -6.26 16 15 C 0.07 0.90 11.08 -16.68 -0.18 0.72 16 16 C -0.22 -2.74 11.08 -37.64 -0.42 -3.16 16 17 C -0.06 -0.87 6.37 -105.14 -0.67 -1.54 16 18 C -0.12 -1.64 9.87 -39.18 -0.39 -2.02 16 19 C -0.01 -0.10 6.31 -39.54 -0.25 -0.35 16 20 Cl -0.09 -0.98 28.94 -51.86 -1.50 -2.49 16 21 C -0.20 -2.63 9.66 -39.29 -0.38 -3.01 16 22 C 0.24 3.44 6.76 -83.65 -0.57 2.88 16 23 N -0.88 -11.42 8.34 32.48 0.27 -11.15 16 24 C 0.04 0.62 6.65 -83.69 -0.56 0.06 16 25 C -0.06 -1.05 7.19 -39.42 -0.28 -1.33 16 26 C -0.18 -3.35 9.98 -39.42 -0.39 -3.74 16 27 H 0.28 6.88 8.31 -40.82 -0.34 6.54 16 28 H 0.14 2.58 5.62 -52.49 -0.29 2.29 16 29 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 30 H 0.17 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.15 1.44 8.06 -52.49 -0.42 1.02 16 32 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 33 H 0.13 1.47 8.06 -52.49 -0.42 1.05 16 34 H 0.41 5.87 5.33 -40.82 -0.22 5.65 16 35 H 0.40 4.18 8.88 -40.82 -0.36 3.82 16 36 H 0.12 1.83 8.03 -52.49 -0.42 1.41 16 37 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 LS Contribution 334.34 15.07 5.04 5.04 Total: -1.00 -27.61 334.34 -9.15 -36.76 By element: Atomic # 1 Polarization: 17.73 SS G_CDS: -3.24 Total: 14.49 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -5.29 Total: -23.67 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.86 Total: -39.87 kcal Atomic # 8 Polarization: -4.16 SS G_CDS: 0.00 Total: -4.16 kcal Atomic # 14 Polarization: 18.92 SS G_CDS: -5.02 Total: 13.90 kcal Atomic # 17 Polarization: -0.98 SS G_CDS: -1.50 Total: -2.49 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.61 -9.15 -36.76 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212612049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.062 kcal (2) G-P(sol) polarization free energy of solvation -27.609 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds