Wall clock time and date at job start Tue Mar 31 2020 15:28:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31573 * 1 3 3 Si 1.86796 * 120.00419 * 2 1 4 4 H 1.48495 * 109.47457 * 240.00392 * 3 2 1 5 5 H 1.48505 * 109.47076 * 0.02562 * 3 2 1 6 6 H 1.48508 * 109.47016 * 119.99951 * 3 2 1 7 7 C 1.38623 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99785 * 179.97438 * 7 2 1 9 9 O 1.34814 * 120.00352 * 359.97438 * 7 2 1 10 10 C 1.35767 * 117.00310 * 174.64887 * 9 7 2 11 11 C 1.38911 * 119.99886 * 0.08894 * 10 9 7 12 12 C 1.37997 * 120.00196 * 179.97438 * 11 10 9 13 13 C 1.38923 * 119.99698 * 0.02562 * 12 11 10 14 14 N 1.40089 * 120.00006 * 179.97438 * 13 12 11 15 15 C 1.36903 * 125.10983 * 301.80447 * 14 13 12 16 16 C 1.34276 * 109.89112 * 180.02562 * 15 14 13 17 17 C 1.46517 * 107.06244 * 359.97438 * 16 15 14 18 18 C 1.39823 * 133.91047 * 179.97438 * 17 16 15 19 19 C 1.37708 * 119.77940 * 180.02562 * 18 17 16 20 20 Cl 1.73594 * 119.78960 * 180.28168 * 19 18 17 21 21 C 1.38885 * 120.41828 * 0.02562 * 19 18 17 22 22 C 1.38370 * 120.56699 * 0.02562 * 21 19 18 23 23 N 1.39797 * 120.09799 * 179.97438 * 22 21 19 24 24 C 1.38075 * 125.10328 * 121.83866 * 14 13 12 25 25 C 1.38924 * 120.00141 * 0.24875 * 13 12 11 26 26 C 1.37993 * 119.99389 * 359.51864 * 25 13 12 27 27 H 0.97003 * 120.00002 * 359.97438 * 1 2 3 28 28 H 1.07994 * 120.00066 * 359.97438 * 11 10 9 29 29 H 1.08002 * 120.00181 * 180.02562 * 12 11 10 30 30 H 1.08001 * 125.05330 * 359.97438 * 15 14 13 31 31 H 1.07998 * 126.47149 * 179.97438 * 16 15 14 32 32 H 1.08005 * 120.10884 * 359.97438 * 18 17 16 33 33 H 1.07997 * 119.71733 * 179.97438 * 21 19 18 34 34 H 0.97000 * 120.00495 * 163.74923 * 23 22 21 35 35 H 0.97008 * 119.99952 * 343.75715 * 23 22 21 36 36 H 1.07998 * 120.00201 * 179.74972 * 25 13 12 37 37 H 1.08002 * 119.99539 * 180.23572 * 26 25 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2498 1.6176 0.0000 4 1 3.1035 1.6964 -1.2125 5 1 1.2849 2.7464 0.0006 6 1 3.1036 1.6962 1.2126 7 6 2.0088 -1.2005 -0.0005 8 1 3.0888 -1.2006 -0.0010 9 8 1.3347 -2.3681 -0.0005 10 6 2.0695 -3.5041 -0.1139 11 6 3.4524 -3.4290 -0.2212 12 6 4.1993 -4.5836 -0.3359 13 6 3.5682 -5.8211 -0.3445 14 7 4.3263 -6.9933 -0.4615 15 6 5.1705 -7.2848 -1.4991 16 6 5.7398 -8.4848 -1.3017 17 6 5.2188 -9.0045 -0.0347 18 6 5.4302 -10.1807 0.6912 19 6 4.7693 -10.3769 1.8833 20 17 5.0372 -11.8338 2.7883 21 6 3.8938 -9.4142 2.3686 22 6 3.6720 -8.2449 1.6628 23 7 2.7882 -7.2827 2.1602 24 6 4.3338 -8.0285 0.4521 25 6 2.1847 -5.8960 -0.2430 26 6 1.4383 -4.7416 -0.1235 27 1 -0.4850 0.8401 0.0004 28 1 3.9430 -2.4669 -0.2149 29 1 5.2746 -4.5252 -0.4189 30 1 5.3511 -6.6450 -2.3503 31 1 6.4479 -8.9745 -1.9537 32 1 6.1090 -10.9332 0.3177 33 1 3.3812 -9.5799 3.3046 34 1 2.8047 -6.3797 1.8061 35 1 2.1585 -7.5179 2.8596 36 1 1.6937 -6.8579 -0.2538 37 1 0.3630 -4.7999 -0.0407 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001212612049.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:28:03 Heat of formation + Delta-G solvation = 45.943501 kcal Electronic energy + Delta-G solvation = -24080.079474 eV Core-core repulsion = 20427.854417 eV Total energy + Delta-G solvation = -3652.225058 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 328.072 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.61805 -40.80091 -38.88929 -38.06166 -37.21570 -35.34247 -34.33427 -32.61258 -32.05975 -30.00974 -29.89613 -28.36793 -27.24959 -24.09396 -23.72539 -23.30891 -22.52216 -21.00006 -20.00687 -19.37562 -18.56133 -17.88238 -17.46027 -16.77360 -16.59297 -16.34020 -15.81962 -15.73743 -15.60931 -15.37755 -15.24792 -14.63984 -14.38841 -14.14723 -13.82206 -13.75402 -13.48480 -13.32973 -13.12102 -13.01721 -12.74168 -12.57307 -12.39436 -12.27900 -12.17420 -11.79040 -11.39175 -11.17645 -10.84954 -10.06065 -9.86929 -9.18308 -9.04217 -8.53049 -7.98472 -6.20791 0.11874 0.32742 0.34328 0.57718 1.26145 1.36194 1.44858 1.51374 1.82598 1.85743 2.14053 2.61347 2.84763 2.96410 3.04786 3.34212 3.68425 3.87885 3.91638 3.94674 4.19711 4.32389 4.37181 4.48839 4.59005 4.64448 4.71825 4.89687 4.96447 4.99260 5.02949 5.15425 5.26354 5.36444 5.43069 5.50393 5.67676 5.75077 5.83089 5.93487 6.13040 6.48476 6.56695 6.84873 6.91473 7.65471 8.68507 Molecular weight = 328.07amu Principal moments of inertia in cm(-1) A = 0.026174 B = 0.002583 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.505312 B =10838.304470 C =11354.076254 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C -0.017 4.017 3 Si 1.015 2.985 4 H -0.256 1.256 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.416 4.416 8 H 0.108 0.892 9 O -0.216 6.216 10 C 0.131 3.869 11 C -0.223 4.223 12 C -0.054 4.054 13 C 0.024 3.976 14 N -0.418 5.418 15 C 0.057 3.943 16 C -0.208 4.208 17 C -0.073 4.073 18 C -0.126 4.126 19 C -0.014 4.014 20 Cl -0.072 7.072 21 C -0.200 4.200 22 C 0.227 3.773 23 N -0.877 5.877 24 C 0.016 3.984 25 C -0.054 4.054 26 C -0.180 4.180 27 H 0.275 0.725 28 H 0.134 0.866 29 H 0.142 0.858 30 H 0.191 0.809 31 H 0.176 0.824 32 H 0.145 0.855 33 H 0.143 0.857 34 H 0.398 0.602 35 H 0.407 0.593 36 H 0.134 0.866 37 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.055 -16.312 0.582 19.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.216 4.216 3 Si 0.835 3.165 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.491 4.491 8 H 0.125 0.875 9 O -0.121 6.121 10 C 0.079 3.921 11 C -0.242 4.242 12 C -0.073 4.073 13 C -0.066 4.066 14 N -0.096 5.096 15 C -0.068 4.068 16 C -0.232 4.232 17 C -0.079 4.079 18 C -0.148 4.148 19 C -0.042 4.042 20 Cl -0.044 7.044 21 C -0.226 4.226 22 C 0.120 3.880 23 N -0.421 5.421 24 C -0.091 4.091 25 C -0.074 4.074 26 C -0.200 4.200 27 H 0.084 0.916 28 H 0.152 0.848 29 H 0.160 0.840 30 H 0.208 0.792 31 H 0.194 0.806 32 H 0.162 0.838 33 H 0.161 0.839 34 H 0.229 0.771 35 H 0.237 0.763 36 H 0.152 0.848 37 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 10.501 -15.984 0.686 19.137 hybrid contribution -0.364 1.087 0.275 1.179 sum 10.137 -14.898 0.961 18.045 Atomic orbital electron populations 1.70166 1.08024 1.29153 1.47673 1.26555 0.96769 1.02741 0.95502 0.84682 0.77464 0.74345 0.80042 1.18010 1.19901 1.18131 1.21820 0.92733 0.81103 1.53466 0.87462 1.83970 1.35907 1.12592 1.79632 1.19901 0.91367 0.87927 0.92954 1.21136 0.92998 0.99569 1.10536 1.20922 1.00085 0.89833 0.96482 1.17320 0.90046 0.84776 1.14504 1.41115 1.36978 1.13434 1.18093 1.22451 0.93274 0.98381 0.92654 1.21936 1.07298 0.96339 0.97644 1.19120 0.98321 0.93799 0.96704 1.20221 1.03016 0.97484 0.94035 1.20239 1.00508 0.89115 0.94348 1.98336 1.95751 1.35816 1.74458 1.20127 1.05826 0.94154 1.02455 1.16779 0.91242 0.90700 0.89292 1.42802 1.41025 1.12069 1.46156 1.18332 1.05613 0.91767 0.93414 1.20692 0.91637 0.97527 0.97538 1.20221 1.00361 0.89126 1.10302 0.91632 0.84815 0.84044 0.79244 0.80628 0.83772 0.83914 0.77110 0.76329 0.84829 0.85459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -52.69 13.67 21.61 0.30 -52.39 16 2 C -0.02 -0.88 5.49 84.82 0.47 -0.41 16 3 Si 1.02 39.73 29.55 68.60 2.03 41.75 16 4 H -0.26 -9.36 7.11 99.48 0.71 -8.66 16 5 H -0.27 -10.48 7.11 99.48 0.71 -9.78 16 6 H -0.26 -9.45 7.11 99.48 0.71 -8.74 16 7 C -0.42 -22.05 9.47 67.91 0.64 -21.41 16 8 H 0.11 5.11 5.20 -2.91 -0.02 5.10 16 9 O -0.22 -11.73 9.75 -22.76 -0.22 -11.95 16 10 C 0.13 5.70 6.66 22.59 0.15 5.85 16 11 C -0.22 -8.41 9.16 22.37 0.20 -8.20 16 12 C -0.05 -1.67 9.78 22.38 0.22 -1.45 16 13 C 0.02 0.72 4.70 38.15 0.18 0.90 16 14 N -0.42 -11.48 2.85 -338.48 -0.97 -12.44 16 15 C 0.06 1.30 11.08 83.00 0.92 2.22 16 16 C -0.21 -4.43 11.08 23.52 0.26 -4.17 16 17 C -0.07 -1.87 6.37 -20.20 -0.13 -2.00 16 18 C -0.13 -2.93 9.87 22.53 0.22 -2.71 16 19 C -0.01 -0.32 6.31 22.30 0.14 -0.18 16 20 Cl -0.07 -1.48 28.94 -2.72 -0.08 -1.56 16 21 C -0.20 -4.79 9.66 22.46 0.22 -4.57 16 22 C 0.23 6.01 6.76 38.25 0.26 6.27 16 23 N -0.88 -21.56 8.34 -51.16 -0.43 -21.99 16 24 C 0.02 0.44 6.65 39.04 0.26 0.70 16 25 C -0.05 -1.69 7.19 22.38 0.16 -1.53 16 26 C -0.18 -6.68 9.98 22.37 0.22 -6.45 16 27 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 28 H 0.13 5.08 5.62 -2.91 -0.02 5.07 16 29 H 0.14 3.69 8.06 -2.91 -0.02 3.67 16 30 H 0.19 3.25 8.06 -2.91 -0.02 3.23 16 31 H 0.18 2.63 8.06 -2.91 -0.02 2.60 16 32 H 0.14 2.74 8.06 -2.91 -0.02 2.72 16 33 H 0.14 2.93 8.06 -2.91 -0.02 2.91 16 34 H 0.40 11.03 5.33 -92.71 -0.49 10.53 16 35 H 0.41 8.07 8.88 -92.70 -0.82 7.25 16 36 H 0.13 3.84 8.03 -2.91 -0.02 3.82 16 37 H 0.13 4.64 8.06 -2.91 -0.02 4.61 16 Total: -1.00 -62.45 334.34 4.86 -57.58 By element: Atomic # 1 Polarization: 38.32 SS G_CDS: -0.16 Total: 38.15 kcal Atomic # 6 Polarization: -41.56 SS G_CDS: 4.40 Total: -37.16 kcal Atomic # 7 Polarization: -85.72 SS G_CDS: -1.10 Total: -86.82 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: -0.22 Total: -11.95 kcal Atomic # 14 Polarization: 39.73 SS G_CDS: 2.03 Total: 41.75 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -62.45 4.86 -57.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001212612049.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.528 kcal (2) G-P(sol) polarization free energy of solvation -62.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.584 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds