Wall clock time and date at job start Tue Mar 31 2020 15:18:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86799 * 120.00092 * 2 1 4 4 H 1.48499 * 109.47424 * 269.99939 * 3 2 1 5 5 H 1.48505 * 109.47212 * 30.00101 * 3 2 1 6 6 H 1.48508 * 109.47076 * 149.99737 * 3 2 1 7 7 C 1.40212 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99714 * 189.60749 * 7 2 1 9 9 C 1.40770 * 120.00471 * 9.60970 * 7 2 1 10 10 C 1.40759 * 120.34003 * 31.63283 * 9 7 2 11 11 C 1.36465 * 120.00446 * 180.30242 * 10 9 7 12 12 C 1.38925 * 120.73146 * 359.69836 * 11 10 9 13 13 C 1.38063 * 120.69681 * 0.02562 * 12 11 10 14 14 C 1.39387 * 119.96509 * 0.02562 * 13 12 11 15 15 C 1.47273 * 120.35652 * 179.97438 * 14 13 12 16 16 N 1.32219 * 126.59260 * 357.64661 * 15 14 13 17 17 C 1.34817 * 105.50993 * 179.89951 * 16 15 14 18 18 C 1.48389 * 126.29608 * 180.17884 * 17 16 15 19 19 C 1.39363 * 120.12295 * 180.26356 * 18 17 16 20 20 C 1.37967 * 119.95354 * 179.97438 * 19 18 17 21 21 C 1.38369 * 120.19723 * 359.97438 * 20 19 18 22 22 C 1.38404 * 120.24506 * 359.97438 * 21 20 19 23 23 F 1.35104 * 119.98012 * 180.02562 * 22 21 20 24 24 C 1.38538 * 120.04522 * 359.77210 * 22 21 20 25 25 F 1.35100 * 120.09843 * 180.27432 * 24 22 21 26 26 N 1.30949 * 107.40705 * 0.37622 * 17 16 15 27 27 O 1.21270 * 110.37438 * 359.76134 * 26 17 16 28 28 H 0.97001 * 119.99934 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00019 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.63203 * 179.72199 * 11 10 9 31 31 H 1.07999 * 119.65248 * 180.02562 * 12 11 10 32 32 H 1.07999 * 120.01912 * 179.97438 * 13 12 11 33 33 H 1.08007 * 120.02533 * 0.02562 * 19 18 17 34 34 H 1.08001 * 119.90604 * 180.02562 * 20 19 18 35 35 H 1.08004 * 119.87487 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4401 0.7001 7 6 2.0077 -1.2143 -0.0005 8 1 3.0764 -1.2209 0.1556 9 6 1.3188 -2.4248 -0.2046 10 6 0.1734 -2.4620 -1.0219 11 6 -0.4928 -3.6380 -1.2101 12 6 -0.0504 -4.8089 -0.6073 13 6 1.0728 -4.8074 0.1956 14 6 1.7749 -3.6222 0.4084 15 6 2.9738 -3.6107 1.2637 16 7 3.4771 -4.6363 1.9292 17 6 4.5656 -4.1556 2.5630 18 6 5.4814 -4.9244 3.4417 19 6 6.5711 -4.2935 4.0390 20 6 7.4200 -5.0116 4.8558 21 6 7.1929 -6.3572 5.0846 22 6 6.1126 -6.9917 4.4964 23 9 5.8955 -8.3056 4.7239 24 6 5.2507 -6.2792 3.6787 25 9 4.1927 -6.8962 3.1084 26 7 4.6636 -2.8845 2.2639 27 8 3.7626 -2.5546 1.5223 28 1 -0.4850 0.8401 0.0004 29 1 -0.1808 -1.5588 -1.4966 30 1 -1.3736 -3.6587 -1.8348 31 1 -0.5908 -5.7300 -0.7684 32 1 1.4068 -5.7239 0.6591 33 1 6.7504 -3.2430 3.8634 34 1 8.2640 -4.5218 5.3187 35 1 7.8605 -6.9142 5.7253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215610857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:34 Heat of formation + Delta-G solvation = 22.809009 kcal Electronic energy + Delta-G solvation = -26309.855909 eV Core-core repulsion = 22104.830984 eV Total energy + Delta-G solvation = -4205.024925 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -49.43969 -48.45063 -44.49794 -39.02765 -37.83541 -35.08692 -34.00110 -32.74429 -30.86258 -30.52970 -29.84028 -29.07883 -25.77329 -24.66571 -23.73580 -22.53237 -21.96085 -20.94487 -20.18858 -18.15476 -17.71699 -17.24446 -17.16891 -17.12345 -16.29027 -16.23899 -15.65792 -15.04076 -15.00415 -14.87348 -14.59587 -14.25844 -14.08361 -13.55916 -13.06515 -12.87296 -12.55907 -12.53149 -12.19744 -12.07390 -11.83468 -11.57559 -11.46054 -11.32639 -11.22117 -10.96815 -10.68101 -10.33797 -9.94518 -9.88979 -9.79101 -9.53336 -8.91398 -8.76589 -7.70612 -7.56432 -7.10315 -4.76427 0.49215 0.77970 1.59635 2.50346 2.66227 2.94052 2.99013 3.06591 3.21543 3.46949 3.57394 3.72429 3.77527 3.94778 4.23875 4.36807 4.39919 4.56952 4.80987 5.00349 5.26811 5.33645 5.56679 5.73017 5.84359 5.96710 6.00209 6.06179 6.20120 6.31944 6.51070 6.61721 6.71640 6.74373 6.85875 7.01710 7.24495 7.54014 7.67080 7.78878 7.89355 8.25982 8.43838 8.53332 8.97093 9.80381 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.003682 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.397176 B = 7601.989514 C = 9263.963003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.772 5.772 2 C 0.076 3.924 3 Si 0.916 3.084 4 H -0.263 1.263 5 H -0.273 1.273 6 H -0.254 1.254 7 C -0.432 4.432 8 H 0.097 0.903 9 C 0.141 3.859 10 C -0.146 4.146 11 C -0.086 4.086 12 C -0.237 4.237 13 C -0.027 4.027 14 C -0.182 4.182 15 C 0.291 3.709 16 N -0.514 5.514 17 C 0.189 3.811 18 C -0.008 4.008 19 C -0.071 4.071 20 C -0.105 4.105 21 C -0.118 4.118 22 C 0.060 3.940 23 F -0.127 7.127 24 C 0.107 3.893 25 F -0.102 7.102 26 N -0.404 5.404 27 O 0.089 5.911 28 H 0.289 0.711 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.148 0.852 34 H 0.146 0.854 35 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.547 -4.684 6.017 12.218 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.396 5.396 2 C -0.146 4.146 3 Si 0.739 3.261 4 H -0.188 1.188 5 H -0.198 1.198 6 H -0.178 1.178 7 C -0.460 4.460 8 H 0.115 0.885 9 C 0.136 3.864 10 C -0.165 4.165 11 C -0.106 4.106 12 C -0.257 4.257 13 C -0.047 4.047 14 C -0.187 4.187 15 C 0.084 3.916 16 N -0.249 5.249 17 C -0.081 4.081 18 C -0.010 4.010 19 C -0.091 4.091 20 C -0.123 4.123 21 C -0.138 4.138 22 C 0.040 3.960 23 F -0.106 7.106 24 C 0.084 3.916 25 F -0.080 7.080 26 N -0.116 5.116 27 O 0.030 5.970 28 H 0.101 0.899 29 H 0.143 0.857 30 H 0.114 0.886 31 H 0.117 0.883 32 H 0.126 0.874 33 H 0.165 0.835 34 H 0.163 0.837 35 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 9.930 -4.510 6.465 12.679 hybrid contribution -0.195 0.416 -0.092 0.468 sum 9.735 -4.094 6.373 12.335 Atomic orbital electron populations 1.69699 1.07836 1.30414 1.31630 1.26080 0.94900 1.01961 0.91673 0.86141 0.80856 0.79333 0.79801 1.18762 1.19822 1.17751 1.20016 0.96673 0.90233 1.39087 0.88530 1.17577 0.91039 0.90633 0.87163 1.21085 0.97747 0.97066 1.00576 1.20650 0.98110 0.93365 0.98435 1.20374 1.00648 0.97545 1.07122 1.20611 0.93436 0.95456 0.95168 1.17217 0.96367 0.96804 1.08350 1.26321 0.92969 0.79295 0.93059 1.72382 1.09653 1.27784 1.15048 1.23172 0.95250 0.89112 1.00556 1.17326 0.95372 0.90117 0.98232 1.21217 0.91967 1.01243 0.94697 1.20966 0.99959 0.92985 0.98422 1.21165 0.96418 0.95720 1.00461 1.17504 0.97751 0.79136 1.01653 1.91535 1.94557 1.31257 1.93243 1.17606 0.87041 0.90359 0.96586 1.91640 1.52538 1.81826 1.81976 1.74723 1.10535 1.14546 1.11831 1.85572 1.28131 1.36352 1.46909 0.89946 0.85747 0.88553 0.88295 0.87435 0.83467 0.83668 0.83468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -17.86 10.98 55.56 0.61 -17.25 16 2 C 0.08 1.72 5.26 -17.30 -0.09 1.63 16 3 Si 0.92 17.27 29.57 -169.99 -5.03 12.25 16 4 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 6 H -0.25 -4.89 7.11 56.52 0.40 -4.49 16 7 C -0.43 -10.47 8.04 -37.88 -0.30 -10.77 16 8 H 0.10 2.33 5.66 -52.49 -0.30 2.03 16 9 C 0.14 3.45 5.54 -106.53 -0.59 2.86 16 10 C -0.15 -3.38 8.58 -39.27 -0.34 -3.72 16 11 C -0.09 -1.81 9.96 -39.97 -0.40 -2.21 16 12 C -0.24 -4.91 10.03 -39.39 -0.40 -5.30 16 13 C -0.03 -0.60 9.70 -39.22 -0.38 -0.98 16 14 C -0.18 -4.35 5.93 -104.34 -0.62 -4.97 16 15 C 0.29 6.87 7.85 -13.93 -0.11 6.76 16 16 N -0.51 -11.66 9.94 -10.24 -0.10 -11.76 16 17 C 0.19 3.90 7.77 -156.34 -1.22 2.69 16 18 C -0.01 -0.13 5.88 -104.85 -0.62 -0.74 16 19 C -0.07 -0.89 9.69 -39.26 -0.38 -1.27 16 20 C -0.11 -0.96 10.03 -39.63 -0.40 -1.36 16 21 C -0.12 -1.13 10.01 -39.47 -0.40 -1.52 16 22 C 0.06 0.78 7.30 -39.41 -0.29 0.49 16 23 F -0.13 -1.72 17.18 2.25 0.04 -1.68 16 24 C 0.11 1.72 7.29 -39.02 -0.28 1.43 16 25 F -0.10 -1.91 15.71 2.25 0.04 -1.87 16 26 N -0.40 -8.63 11.84 31.27 0.37 -8.26 16 27 O 0.09 2.05 8.36 16.30 0.14 2.19 16 28 H 0.29 6.03 8.29 -40.82 -0.34 5.69 16 29 H 0.12 2.91 6.40 -52.48 -0.34 2.57 16 30 H 0.10 1.75 8.06 -52.49 -0.42 1.32 16 31 H 0.10 1.78 8.06 -52.49 -0.42 1.36 16 32 H 0.11 2.28 7.88 -52.49 -0.41 1.87 16 33 H 0.15 1.75 7.86 -52.48 -0.41 1.34 16 34 H 0.15 0.81 8.06 -52.49 -0.42 0.38 16 35 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 LS Contribution 322.09 15.07 4.85 4.85 Total: -1.00 -26.82 322.09 -8.17 -35.00 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -2.28 Total: 3.52 kcal Atomic # 6 Polarization: -10.18 SS G_CDS: -6.80 Total: -16.98 kcal Atomic # 7 Polarization: -38.15 SS G_CDS: 0.88 Total: -37.27 kcal Atomic # 8 Polarization: 2.05 SS G_CDS: 0.14 Total: 2.19 kcal Atomic # 9 Polarization: -3.62 SS G_CDS: 0.07 Total: -3.55 kcal Atomic # 14 Polarization: 17.27 SS G_CDS: -5.03 Total: 12.25 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.82 -8.17 -35.00 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215610857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.804 kcal (2) G-P(sol) polarization free energy of solvation -26.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds