Wall clock time and date at job start Tue Mar 31 2020 15:18:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86799 * 120.00092 * 2 1 4 4 H 1.48499 * 109.47424 * 269.99939 * 3 2 1 5 5 H 1.48505 * 109.47212 * 30.00101 * 3 2 1 6 6 H 1.48508 * 109.47076 * 149.99737 * 3 2 1 7 7 C 1.40212 * 119.99808 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99714 * 189.60749 * 7 2 1 9 9 C 1.40770 * 120.00471 * 9.60970 * 7 2 1 10 10 C 1.40759 * 120.34003 * 31.63283 * 9 7 2 11 11 C 1.36465 * 120.00446 * 180.30242 * 10 9 7 12 12 C 1.38925 * 120.73146 * 359.69836 * 11 10 9 13 13 C 1.38063 * 120.69681 * 0.02562 * 12 11 10 14 14 C 1.39387 * 119.96509 * 0.02562 * 13 12 11 15 15 C 1.47273 * 120.35652 * 179.97438 * 14 13 12 16 16 N 1.32219 * 126.59260 * 357.64661 * 15 14 13 17 17 C 1.34817 * 105.50993 * 179.89951 * 16 15 14 18 18 C 1.48389 * 126.29608 * 180.17884 * 17 16 15 19 19 C 1.39363 * 120.12295 * 180.26356 * 18 17 16 20 20 C 1.37967 * 119.95354 * 179.97438 * 19 18 17 21 21 C 1.38369 * 120.19723 * 359.97438 * 20 19 18 22 22 C 1.38404 * 120.24506 * 359.97438 * 21 20 19 23 23 F 1.35104 * 119.98012 * 180.02562 * 22 21 20 24 24 C 1.38538 * 120.04522 * 359.77210 * 22 21 20 25 25 F 1.35100 * 120.09843 * 180.27432 * 24 22 21 26 26 N 1.30949 * 107.40705 * 0.37622 * 17 16 15 27 27 O 1.21270 * 110.37438 * 359.76134 * 26 17 16 28 28 H 0.97001 * 119.99934 * 359.97438 * 1 2 3 29 29 H 1.08003 * 120.00019 * 0.02562 * 10 9 7 30 30 H 1.08001 * 119.63203 * 179.72199 * 11 10 9 31 31 H 1.07999 * 119.65248 * 180.02562 * 12 11 10 32 32 H 1.07999 * 120.01912 * 179.97438 * 13 12 11 33 33 H 1.08007 * 120.02533 * 0.02562 * 19 18 17 34 34 H 1.08001 * 119.90604 * 180.02562 * 20 19 18 35 35 H 1.08004 * 119.87487 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6177 0.0000 4 1 2.4883 2.0464 -1.4000 5 1 1.4382 2.6527 0.7001 6 1 3.5383 1.4401 0.7001 7 6 2.0077 -1.2143 -0.0005 8 1 3.0764 -1.2209 0.1556 9 6 1.3188 -2.4248 -0.2046 10 6 0.1734 -2.4620 -1.0219 11 6 -0.4928 -3.6380 -1.2101 12 6 -0.0504 -4.8089 -0.6073 13 6 1.0728 -4.8074 0.1956 14 6 1.7749 -3.6222 0.4084 15 6 2.9738 -3.6107 1.2637 16 7 3.4771 -4.6363 1.9292 17 6 4.5656 -4.1556 2.5630 18 6 5.4814 -4.9244 3.4417 19 6 6.5711 -4.2935 4.0390 20 6 7.4200 -5.0116 4.8558 21 6 7.1929 -6.3572 5.0846 22 6 6.1126 -6.9917 4.4964 23 9 5.8955 -8.3056 4.7239 24 6 5.2507 -6.2792 3.6787 25 9 4.1927 -6.8962 3.1084 26 7 4.6636 -2.8845 2.2639 27 8 3.7626 -2.5546 1.5223 28 1 -0.4850 0.8401 0.0004 29 1 -0.1808 -1.5588 -1.4966 30 1 -1.3736 -3.6587 -1.8348 31 1 -0.5908 -5.7300 -0.7684 32 1 1.4068 -5.7239 0.6591 33 1 6.7504 -3.2430 3.8634 34 1 8.2640 -4.5218 5.3187 35 1 7.8605 -6.9142 5.7253 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215610857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:33 Heat of formation + Delta-G solvation = 9.535058 kcal Electronic energy + Delta-G solvation = -26310.431511 eV Core-core repulsion = 22104.830984 eV Total energy + Delta-G solvation = -4205.600526 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -50.55895 -49.63314 -46.16675 -40.04255 -39.57744 -36.70609 -35.72849 -34.31579 -32.22230 -31.54162 -31.50276 -30.70975 -27.53269 -25.96092 -25.28700 -23.67001 -23.46047 -22.66427 -21.73340 -19.68450 -19.12427 -18.86296 -18.52064 -18.21605 -17.66021 -17.42385 -17.32373 -16.65952 -16.06225 -16.05483 -15.86466 -15.78515 -15.34825 -15.18850 -14.51644 -14.30059 -13.98713 -13.84481 -13.73699 -13.55061 -13.17323 -13.09152 -12.90384 -12.82260 -12.58784 -12.52846 -12.24669 -12.02510 -11.60456 -11.52875 -11.52407 -11.20978 -10.01646 -9.89501 -9.48097 -9.30619 -8.81516 -6.57493 -0.63837 -0.20561 -0.12848 0.91001 1.07588 1.37891 1.48677 1.52008 1.64944 2.03371 2.15954 2.31108 2.35450 2.63258 2.66095 3.05853 3.30051 3.54327 3.55299 3.77061 4.00372 4.10514 4.36429 4.44088 4.55086 4.68823 4.70549 4.87018 4.89100 4.95926 4.98861 5.04638 5.10286 5.13881 5.27431 5.48106 5.59913 5.81343 5.89418 6.03472 6.14049 6.47761 6.66042 6.76003 7.24725 8.12321 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.015893 B = 0.003682 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.397176 B = 7601.989514 C = 9263.963003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.044 3.956 3 Si 0.978 3.022 4 H -0.252 1.252 5 H -0.261 1.261 6 H -0.264 1.264 7 C -0.460 4.460 8 H 0.087 0.913 9 C 0.118 3.882 10 C -0.165 4.165 11 C -0.080 4.080 12 C -0.229 4.229 13 C -0.038 4.038 14 C -0.204 4.204 15 C 0.278 3.722 16 N -0.530 5.530 17 C 0.197 3.803 18 C -0.046 4.046 19 C -0.067 4.067 20 C -0.077 4.077 21 C -0.087 4.087 22 C 0.054 3.946 23 F -0.132 7.132 24 C 0.075 3.925 25 F -0.130 7.130 26 N -0.413 5.413 27 O 0.065 5.935 28 H 0.299 0.701 29 H 0.118 0.882 30 H 0.130 0.870 31 H 0.133 0.867 32 H 0.111 0.889 33 H 0.152 0.848 34 H 0.198 0.802 35 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.481 -4.910 7.504 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.420 5.420 2 C -0.176 4.176 3 Si 0.798 3.202 4 H -0.176 1.176 5 H -0.185 1.185 6 H -0.188 1.188 7 C -0.488 4.488 8 H 0.105 0.895 9 C 0.114 3.886 10 C -0.184 4.184 11 C -0.099 4.099 12 C -0.248 4.248 13 C -0.058 4.058 14 C -0.209 4.209 15 C 0.070 3.930 16 N -0.266 5.266 17 C -0.074 4.074 18 C -0.049 4.049 19 C -0.087 4.087 20 C -0.095 4.095 21 C -0.106 4.106 22 C 0.034 3.966 23 F -0.111 7.111 24 C 0.053 3.947 25 F -0.108 7.108 26 N -0.130 5.130 27 O 0.013 5.987 28 H 0.110 0.890 29 H 0.136 0.864 30 H 0.148 0.852 31 H 0.151 0.849 32 H 0.129 0.871 33 H 0.170 0.830 34 H 0.215 0.785 35 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 11.833 -4.730 7.927 15.008 hybrid contribution -0.701 0.327 -0.440 0.890 sum 11.133 -4.403 7.488 14.120 Atomic orbital electron populations 1.69708 1.08791 1.31757 1.31739 1.26774 0.95609 1.04339 0.90867 0.85230 0.79080 0.75653 0.80216 1.17571 1.18521 1.18834 1.20137 0.96492 0.91340 1.40813 0.89516 1.17879 0.91930 0.91068 0.87773 1.21130 0.98177 0.97895 1.01204 1.21005 0.98517 0.92476 0.97922 1.20763 0.99771 0.98816 1.05484 1.20793 0.94104 0.95054 0.95843 1.17519 0.96983 0.97498 1.08899 1.26476 0.93276 0.79773 0.93445 1.72384 1.10738 1.27874 1.15581 1.23921 0.94768 0.89027 0.99667 1.17530 0.96884 0.90391 1.00113 1.21471 0.91047 1.01733 0.94486 1.21528 0.99630 0.92487 0.95844 1.21748 0.94583 0.95885 0.98415 1.17748 0.98273 0.78967 1.01635 1.91525 1.94714 1.31609 1.93227 1.18003 0.87598 0.90740 0.98359 1.91554 1.54133 1.82286 1.82842 1.74665 1.10595 1.15078 1.12616 1.85541 1.28725 1.36665 1.47797 0.88956 0.86383 0.85169 0.84916 0.87120 0.83038 0.78475 0.78853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -37.54 10.98 21.87 0.24 -37.30 16 2 C 0.04 2.03 5.26 85.35 0.45 2.48 16 3 Si 0.98 35.92 29.57 68.60 2.03 37.95 16 4 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 5 H -0.26 -8.99 7.11 99.48 0.71 -8.28 16 6 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 7 C -0.46 -23.42 8.04 23.37 0.19 -23.23 16 8 H 0.09 4.47 5.66 -2.91 -0.02 4.45 16 9 C 0.12 6.06 5.54 -21.10 -0.12 5.94 16 10 C -0.16 -7.83 8.58 22.47 0.19 -7.64 16 11 C -0.08 -3.31 9.96 22.02 0.22 -3.09 16 12 C -0.23 -9.29 10.03 22.39 0.22 -9.06 16 13 C -0.04 -1.74 9.70 22.50 0.22 -1.52 16 14 C -0.20 -10.23 5.93 -19.68 -0.12 -10.35 16 15 C 0.28 13.96 7.85 87.09 0.68 14.64 16 16 N -0.53 -25.46 9.94 -301.99 -3.00 -28.46 16 17 C 0.20 8.48 7.77 137.36 1.07 9.55 16 18 C -0.05 -1.55 5.88 -20.01 -0.12 -1.66 16 19 C -0.07 -1.54 9.69 22.48 0.22 -1.33 16 20 C -0.08 -1.01 10.03 22.24 0.22 -0.79 16 21 C -0.09 -1.23 10.01 22.34 0.22 -1.01 16 22 C 0.05 1.30 7.30 22.38 0.16 1.46 16 23 F -0.13 -3.36 17.18 44.97 0.77 -2.59 16 24 C 0.08 2.45 7.29 22.63 0.16 2.62 16 25 F -0.13 -5.12 15.71 44.97 0.71 -4.42 16 26 N -0.41 -18.50 11.84 -57.33 -0.68 -19.18 16 27 O 0.07 3.23 8.36 68.41 0.57 3.80 16 28 H 0.30 12.54 8.29 -92.71 -0.77 11.77 16 29 H 0.12 5.67 6.40 -2.91 -0.02 5.65 16 30 H 0.13 4.42 8.06 -2.91 -0.02 4.40 16 31 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 32 H 0.11 4.86 7.88 -2.91 -0.02 4.83 16 33 H 0.15 3.33 7.86 -2.91 -0.02 3.30 16 34 H 0.20 0.69 8.06 -2.91 -0.02 0.67 16 35 H 0.19 1.07 8.06 -2.91 -0.02 1.05 16 Total: -1.00 -63.97 322.09 5.70 -58.27 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 1.18 Total: 14.92 kcal Atomic # 6 Polarization: -26.87 SS G_CDS: 3.88 Total: -22.99 kcal Atomic # 7 Polarization: -81.50 SS G_CDS: -3.44 Total: -84.94 kcal Atomic # 8 Polarization: 3.23 SS G_CDS: 0.57 Total: 3.80 kcal Atomic # 9 Polarization: -8.49 SS G_CDS: 1.48 Total: -7.01 kcal Atomic # 14 Polarization: 35.92 SS G_CDS: 2.03 Total: 37.95 kcal Total: -63.97 5.70 -58.27 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215610857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.801 kcal (2) G-P(sol) polarization free energy of solvation -63.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds