Wall clock time and date at job start Tue Mar 31 2020 15:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86807 * 119.99672 * 2 1 4 4 H 1.48499 * 109.47088 * 270.05734 * 3 2 1 5 5 H 1.48504 * 109.46769 * 30.06004 * 3 2 1 6 6 H 1.48499 * 109.46930 * 150.05631 * 3 2 1 7 7 C 1.40207 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00370 * 347.01061 * 7 2 1 9 9 C 1.40786 * 119.99949 * 167.00409 * 7 2 1 10 10 C 1.40753 * 120.33934 * 326.62228 * 9 7 2 11 11 C 1.36465 * 120.00021 * 179.97438 * 10 9 7 12 12 C 1.38929 * 120.73144 * 359.97438 * 11 10 9 13 13 C 1.38060 * 120.70159 * 0.02662 * 12 11 10 14 14 C 1.39394 * 119.95807 * 359.97343 * 13 12 11 15 15 C 1.47280 * 120.35197 * 180.02562 * 14 13 12 16 16 N 1.32209 * 126.58881 * 354.33574 * 15 14 13 17 17 C 1.34834 * 105.50627 * 179.89251 * 16 15 14 18 18 C 1.48354 * 126.29469 * 180.10037 * 17 16 15 19 19 C 1.39366 * 120.10650 * 180.29684 * 18 17 16 20 20 C 1.37921 * 119.92995 * 179.97438 * 19 18 17 21 21 C 1.38621 * 120.14795 * 0.02562 * 20 19 18 22 22 F 1.35106 * 119.88532 * 179.97438 * 21 20 19 23 23 C 1.38460 * 120.22455 * 0.02562 * 21 20 19 24 24 C 1.38248 * 120.06898 * 359.69894 * 23 21 20 25 25 F 1.35094 * 120.08222 * 180.30211 * 24 23 21 26 26 N 1.30957 * 107.40643 * 0.37620 * 17 16 15 27 27 O 1.21274 * 110.36669 * 359.75837 * 26 17 16 28 28 H 0.96998 * 120.00227 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00108 * 359.97438 * 10 9 7 30 30 H 1.08011 * 119.63171 * 180.28051 * 11 10 9 31 31 H 1.08004 * 119.65010 * 179.97438 * 12 11 10 32 32 H 1.07994 * 120.02572 * 179.97438 * 13 12 11 33 33 H 1.07996 * 120.03350 * 359.95659 * 19 18 17 34 34 H 1.07995 * 119.91898 * 180.02562 * 20 19 18 35 35 H 1.08004 * 119.97046 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4870 2.0472 -1.4001 5 1 1.4387 2.6523 0.7013 6 1 3.5389 1.4400 0.6988 7 6 2.0079 -1.2142 -0.0005 8 1 1.4887 -2.1376 0.2093 9 6 3.3887 -1.2296 -0.2747 10 6 3.9446 -0.3043 -1.1780 11 6 5.2840 -0.3251 -1.4383 12 6 6.1131 -1.2526 -0.8199 13 6 5.5993 -2.1737 0.0710 14 6 4.2352 -2.1784 0.3582 15 6 3.6780 -3.1567 1.3077 16 7 4.3273 -4.1541 1.8835 17 6 3.4190 -4.7718 2.6654 18 6 3.6608 -5.9569 3.5244 19 6 2.6212 -6.4971 4.2792 20 6 2.8500 -7.5993 5.0761 21 6 4.1118 -8.1707 5.1284 22 9 4.3301 -9.2500 5.9113 23 6 5.1495 -7.6385 4.3820 24 6 4.9290 -6.5374 3.5757 25 9 5.9397 -6.0216 2.8426 26 7 2.2826 -4.1368 2.5226 27 8 2.4109 -3.2105 1.7503 28 1 -0.4850 0.8400 0.0004 29 1 3.3110 0.4222 -1.6652 30 1 5.7050 0.3906 -2.1291 31 1 7.1706 -1.2537 -1.0390 32 1 6.2537 -2.8900 0.5452 33 1 1.6376 -6.0529 4.2403 34 1 2.0442 -8.0180 5.6606 35 1 6.1311 -8.0868 4.4261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001215610976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:37 Heat of formation + Delta-G solvation = 24.293867 kcal Electronic energy + Delta-G solvation = -26191.546879 eV Core-core repulsion = 21986.586343 eV Total energy + Delta-G solvation = -4204.960537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -49.25068 -48.87266 -44.53465 -38.96774 -38.11110 -35.08612 -33.96007 -32.78879 -31.19053 -30.85217 -30.26943 -29.20910 -25.69407 -24.36644 -23.92306 -22.77280 -21.89032 -21.34382 -20.14982 -18.35679 -17.89338 -17.35278 -17.19455 -17.10785 -16.09484 -15.99912 -15.91075 -15.44507 -15.32403 -14.98762 -14.51488 -14.18409 -14.14659 -13.92031 -13.37717 -13.01724 -12.65381 -12.47914 -12.37739 -12.28212 -12.05236 -11.80091 -11.55546 -11.27087 -11.06689 -11.01732 -10.67462 -10.37892 -10.08239 -10.00170 -9.86613 -9.41523 -9.26681 -8.61919 -7.95251 -7.72897 -7.26819 -4.85020 0.45525 0.81045 1.45506 2.37886 2.48042 2.91282 2.96017 3.11467 3.13850 3.51083 3.61697 3.67471 3.76762 3.86866 4.16135 4.25915 4.29353 4.52567 4.75151 5.07185 5.09437 5.30934 5.55045 5.70422 5.72855 5.80873 5.86030 5.91166 5.99132 6.13178 6.36270 6.45255 6.53048 6.54246 6.70458 6.86384 6.99969 7.30868 7.41847 7.54244 7.75767 8.03954 8.24530 8.39460 8.93238 9.71930 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.003331 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.948547 B = 8402.615123 C = 9594.165471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.776 5.776 2 C 0.083 3.917 3 Si 0.915 3.085 4 H -0.263 1.263 5 H -0.285 1.285 6 H -0.241 1.241 7 C -0.413 4.413 8 H 0.108 0.892 9 C 0.113 3.887 10 C -0.225 4.225 11 C -0.055 4.055 12 C -0.248 4.248 13 C -0.009 4.009 14 C -0.171 4.171 15 C 0.285 3.715 16 N -0.511 5.511 17 C 0.190 3.810 18 C -0.046 4.046 19 C -0.031 4.031 20 C -0.167 4.167 21 C 0.137 3.863 22 F -0.131 7.131 23 C -0.198 4.198 24 C 0.170 3.830 25 F -0.104 7.104 26 N -0.401 5.401 27 O 0.098 5.902 28 H 0.293 0.707 29 H 0.111 0.889 30 H 0.101 0.899 31 H 0.104 0.896 32 H 0.113 0.887 33 H 0.152 0.848 34 H 0.148 0.852 35 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.298 -7.979 6.153 11.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C -0.141 4.141 3 Si 0.740 3.260 4 H -0.189 1.189 5 H -0.212 1.212 6 H -0.164 1.164 7 C -0.441 4.441 8 H 0.126 0.874 9 C 0.108 3.892 10 C -0.244 4.244 11 C -0.074 4.074 12 C -0.267 4.267 13 C -0.029 4.029 14 C -0.176 4.176 15 C 0.076 3.924 16 N -0.246 5.246 17 C -0.080 4.080 18 C -0.049 4.049 19 C -0.051 4.051 20 C -0.186 4.186 21 C 0.117 3.883 22 F -0.109 7.109 23 C -0.218 4.218 24 C 0.148 3.852 25 F -0.082 7.082 26 N -0.112 5.112 27 O 0.039 5.961 28 H 0.104 0.896 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.131 0.869 33 H 0.170 0.830 34 H 0.166 0.834 35 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 4.658 -8.417 6.680 11.711 hybrid contribution 0.384 0.726 -0.162 0.837 sum 5.041 -7.691 6.518 11.271 Atomic orbital electron populations 1.69574 1.08318 1.31243 1.30592 1.26339 0.94907 1.02056 0.90773 0.86275 0.81104 0.78930 0.79717 1.18870 1.21242 1.16353 1.19869 0.91348 0.96386 1.36450 0.87444 1.17604 0.92765 0.89814 0.89005 1.20888 0.95390 1.04440 1.03666 1.20587 0.93641 0.96371 0.96807 1.20368 0.98570 1.01879 1.05915 1.20738 0.92692 0.95488 0.93997 1.17084 0.92976 1.02908 1.04623 1.26214 0.79773 0.92782 0.93600 1.72348 1.29501 1.08794 1.13928 1.23214 0.87041 0.98331 0.99426 1.17526 0.93247 0.94421 0.99692 1.20969 0.98928 0.93337 0.91902 1.21080 0.96249 0.98236 1.02997 1.17385 0.93738 0.85409 0.91787 1.91533 1.95415 1.52032 1.71957 1.20940 1.01187 0.98760 1.00925 1.17206 0.84340 0.92250 0.91370 1.91639 1.57299 1.85362 1.73915 1.74774 1.22462 1.02028 1.11894 1.85636 1.30705 1.36977 1.42799 0.89564 0.87106 0.88042 0.87741 0.86916 0.83029 0.83431 0.82904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.82 13.92 55.56 0.77 -18.05 16 2 C 0.08 1.97 5.46 -17.30 -0.09 1.88 16 3 Si 0.91 18.68 24.50 -169.99 -4.16 14.52 16 4 H -0.26 -5.08 6.56 56.52 0.37 -4.71 16 5 H -0.29 -5.65 7.11 56.52 0.40 -5.25 16 6 H -0.24 -5.06 6.92 56.52 0.39 -4.67 16 7 C -0.41 -10.25 8.42 -37.88 -0.32 -10.57 16 8 H 0.11 2.86 6.16 -52.49 -0.32 2.53 16 9 C 0.11 2.65 5.09 -106.53 -0.54 2.11 16 10 C -0.23 -4.82 7.08 -39.27 -0.28 -5.09 16 11 C -0.06 -1.05 9.96 -39.97 -0.40 -1.45 16 12 C -0.25 -4.65 10.03 -39.39 -0.39 -5.05 16 13 C -0.01 -0.19 9.70 -39.22 -0.38 -0.57 16 14 C -0.17 -3.88 5.93 -104.34 -0.62 -4.49 16 15 C 0.29 6.52 7.83 -13.93 -0.11 6.41 16 16 N -0.51 -11.09 9.95 -10.25 -0.10 -11.19 16 17 C 0.19 3.82 7.77 -156.34 -1.22 2.60 16 18 C -0.05 -0.74 5.88 -104.82 -0.62 -1.35 16 19 C -0.03 -0.40 9.69 -39.28 -0.38 -0.78 16 20 C -0.17 -1.71 10.01 -39.56 -0.40 -2.11 16 21 C 0.14 1.48 7.30 -39.36 -0.29 1.19 16 22 F -0.13 -1.37 17.26 2.25 0.04 -1.34 16 23 C -0.20 -2.28 9.99 -39.50 -0.39 -2.67 16 24 C 0.17 2.49 7.28 -39.08 -0.28 2.21 16 25 F -0.10 -1.73 15.79 2.25 0.04 -1.69 16 26 N -0.40 -8.60 11.84 31.26 0.37 -8.23 16 27 O 0.10 2.29 8.48 16.31 0.14 2.43 16 28 H 0.29 6.36 8.29 -40.82 -0.34 6.02 16 29 H 0.11 2.30 4.69 -52.48 -0.25 2.06 16 30 H 0.10 1.61 8.06 -52.48 -0.42 1.19 16 31 H 0.10 1.67 8.06 -52.48 -0.42 1.25 16 32 H 0.11 2.17 7.89 -52.49 -0.41 1.75 16 33 H 0.15 1.84 7.86 -52.49 -0.41 1.43 16 34 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.15 1.41 8.06 -52.48 -0.42 0.98 16 LS Contribution 316.85 15.07 4.77 4.77 Total: -1.00 -26.13 316.85 -7.11 -33.24 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -2.26 Total: 3.28 kcal Atomic # 6 Polarization: -11.03 SS G_CDS: -6.71 Total: -17.74 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 1.04 Total: -37.46 kcal Atomic # 8 Polarization: 2.29 SS G_CDS: 0.14 Total: 2.43 kcal Atomic # 9 Polarization: -3.10 SS G_CDS: 0.07 Total: -3.03 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.16 Total: 14.52 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -26.13 -7.11 -33.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215610976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.530 kcal (2) G-P(sol) polarization free energy of solvation -26.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.294 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds