Wall clock time and date at job start Tue Mar 31 2020 15:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30679 * 1 3 3 Si 1.86807 * 119.99672 * 2 1 4 4 H 1.48499 * 109.47088 * 270.05734 * 3 2 1 5 5 H 1.48504 * 109.46769 * 30.06004 * 3 2 1 6 6 H 1.48499 * 109.46930 * 150.05631 * 3 2 1 7 7 C 1.40207 * 120.00272 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00370 * 347.01061 * 7 2 1 9 9 C 1.40786 * 119.99949 * 167.00409 * 7 2 1 10 10 C 1.40753 * 120.33934 * 326.62228 * 9 7 2 11 11 C 1.36465 * 120.00021 * 179.97438 * 10 9 7 12 12 C 1.38929 * 120.73144 * 359.97438 * 11 10 9 13 13 C 1.38060 * 120.70159 * 0.02662 * 12 11 10 14 14 C 1.39394 * 119.95807 * 359.97343 * 13 12 11 15 15 C 1.47280 * 120.35197 * 180.02562 * 14 13 12 16 16 N 1.32209 * 126.58881 * 354.33574 * 15 14 13 17 17 C 1.34834 * 105.50627 * 179.89251 * 16 15 14 18 18 C 1.48354 * 126.29469 * 180.10037 * 17 16 15 19 19 C 1.39366 * 120.10650 * 180.29684 * 18 17 16 20 20 C 1.37921 * 119.92995 * 179.97438 * 19 18 17 21 21 C 1.38621 * 120.14795 * 0.02562 * 20 19 18 22 22 F 1.35106 * 119.88532 * 179.97438 * 21 20 19 23 23 C 1.38460 * 120.22455 * 0.02562 * 21 20 19 24 24 C 1.38248 * 120.06898 * 359.69894 * 23 21 20 25 25 F 1.35094 * 120.08222 * 180.30211 * 24 23 21 26 26 N 1.30957 * 107.40643 * 0.37620 * 17 16 15 27 27 O 1.21274 * 110.36669 * 359.75837 * 26 17 16 28 28 H 0.96998 * 120.00227 * 359.97438 * 1 2 3 29 29 H 1.08004 * 120.00108 * 359.97438 * 10 9 7 30 30 H 1.08011 * 119.63171 * 180.28051 * 11 10 9 31 31 H 1.08004 * 119.65010 * 179.97438 * 12 11 10 32 32 H 1.07994 * 120.02572 * 179.97438 * 13 12 11 33 33 H 1.07996 * 120.03350 * 359.95659 * 19 18 17 34 34 H 1.07995 * 119.91898 * 180.02562 * 20 19 18 35 35 H 1.08004 * 119.97046 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3068 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4870 2.0472 -1.4001 5 1 1.4387 2.6523 0.7013 6 1 3.5389 1.4400 0.6988 7 6 2.0079 -1.2142 -0.0005 8 1 1.4887 -2.1376 0.2093 9 6 3.3887 -1.2296 -0.2747 10 6 3.9446 -0.3043 -1.1780 11 6 5.2840 -0.3251 -1.4383 12 6 6.1131 -1.2526 -0.8199 13 6 5.5993 -2.1737 0.0710 14 6 4.2352 -2.1784 0.3582 15 6 3.6780 -3.1567 1.3077 16 7 4.3273 -4.1541 1.8835 17 6 3.4190 -4.7718 2.6654 18 6 3.6608 -5.9569 3.5244 19 6 2.6212 -6.4971 4.2792 20 6 2.8500 -7.5993 5.0761 21 6 4.1118 -8.1707 5.1284 22 9 4.3301 -9.2500 5.9113 23 6 5.1495 -7.6385 4.3820 24 6 4.9290 -6.5374 3.5757 25 9 5.9397 -6.0216 2.8426 26 7 2.2826 -4.1368 2.5226 27 8 2.4109 -3.2105 1.7503 28 1 -0.4850 0.8400 0.0004 29 1 3.3110 0.4222 -1.6652 30 1 5.7050 0.3906 -2.1291 31 1 7.1706 -1.2537 -1.0390 32 1 6.2537 -2.8900 0.5452 33 1 1.6376 -6.0529 4.2403 34 1 2.0442 -8.0180 5.6606 35 1 6.1311 -8.0868 4.4261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001215610976.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:18:36 Heat of formation + Delta-G solvation = 10.516232 kcal Electronic energy + Delta-G solvation = -26192.144323 eV Core-core repulsion = 21986.586343 eV Total energy + Delta-G solvation = -4205.557980 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 328.076 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -50.13795 -50.06011 -46.18869 -40.01767 -39.76321 -36.69106 -35.68031 -34.33487 -32.57608 -32.16023 -31.55480 -30.75888 -27.40894 -25.72660 -25.32465 -23.98089 -23.34723 -22.95841 -21.66112 -19.66727 -19.36104 -18.89522 -18.73338 -18.25422 -17.47467 -17.16025 -17.09297 -16.75296 -16.55162 -16.39413 -15.76952 -15.64193 -15.50150 -15.14084 -14.94638 -14.40064 -14.07723 -13.99714 -13.70113 -13.65253 -13.46124 -13.30393 -12.90098 -12.71107 -12.59747 -12.53766 -12.24850 -12.06110 -11.73017 -11.64889 -11.47204 -11.05176 -10.25812 -9.81820 -9.61878 -9.37161 -9.01069 -6.66074 -0.69127 -0.21627 -0.15672 0.76318 0.95228 1.27335 1.37930 1.49723 1.58924 2.00871 2.11451 2.29067 2.41203 2.55570 2.65931 2.95127 3.18622 3.37706 3.48975 3.77770 3.93043 4.09382 4.23685 4.36822 4.49610 4.57780 4.63614 4.69396 4.77924 4.83475 4.84592 4.89868 5.02479 5.03380 5.19200 5.35890 5.53674 5.69483 5.75082 5.89455 6.07299 6.25941 6.53447 6.60975 7.23092 8.04330 Molecular weight = 328.08amu Principal moments of inertia in cm(-1) A = 0.020271 B = 0.003331 C = 0.002918 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1380.948547 B = 8402.615123 C = 9594.165471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.050 3.950 3 Si 0.965 3.035 4 H -0.238 1.238 5 H -0.277 1.277 6 H -0.250 1.250 7 C -0.451 4.451 8 H 0.070 0.930 9 C 0.103 3.897 10 C -0.240 4.240 11 C -0.047 4.047 12 C -0.227 4.227 13 C -0.021 4.021 14 C -0.189 4.189 15 C 0.272 3.728 16 N -0.518 5.518 17 C 0.200 3.800 18 C -0.083 4.083 19 C -0.028 4.028 20 C -0.146 4.146 21 C 0.152 3.848 22 F -0.122 7.122 23 C -0.185 4.185 24 C 0.155 3.845 25 F -0.122 7.122 26 N -0.418 5.418 27 O 0.066 5.934 28 H 0.302 0.698 29 H 0.117 0.883 30 H 0.146 0.854 31 H 0.145 0.855 32 H 0.122 0.878 33 H 0.153 0.847 34 H 0.184 0.816 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.877 -8.528 6.630 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.169 4.169 3 Si 0.786 3.214 4 H -0.163 1.163 5 H -0.204 1.204 6 H -0.174 1.174 7 C -0.479 4.479 8 H 0.088 0.912 9 C 0.099 3.901 10 C -0.259 4.259 11 C -0.065 4.065 12 C -0.246 4.246 13 C -0.040 4.040 14 C -0.194 4.194 15 C 0.063 3.937 16 N -0.254 5.254 17 C -0.070 4.070 18 C -0.086 4.086 19 C -0.048 4.048 20 C -0.165 4.165 21 C 0.132 3.868 22 F -0.100 7.100 23 C -0.204 4.204 24 C 0.134 3.866 25 F -0.100 7.100 26 N -0.134 5.134 27 O 0.014 5.986 28 H 0.113 0.887 29 H 0.135 0.865 30 H 0.164 0.836 31 H 0.163 0.837 32 H 0.140 0.860 33 H 0.171 0.829 34 H 0.202 0.798 35 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges 7.229 -8.948 7.126 13.532 hybrid contribution -0.216 0.615 -0.205 0.684 sum 7.013 -8.333 6.921 12.904 Atomic orbital electron populations 1.69604 1.09478 1.32395 1.32964 1.27018 0.95460 1.04410 0.89996 0.85535 0.79399 0.75584 0.80883 1.16279 1.20363 1.17369 1.19750 0.92471 0.95810 1.39867 0.91201 1.17790 0.92281 0.90713 0.89360 1.21062 0.96893 1.04386 1.03565 1.21078 0.92496 0.96531 0.96412 1.20897 1.00550 0.99761 1.03369 1.20976 0.91684 0.96527 0.94836 1.17476 0.94215 1.02934 1.04803 1.26546 0.79858 0.93360 0.93958 1.72346 1.29900 1.08739 1.14378 1.23955 0.86080 0.98571 0.98431 1.17743 0.95162 0.94319 1.01333 1.21041 0.98189 0.93923 0.91672 1.21370 0.97084 0.96472 1.01526 1.17401 0.93573 0.84998 0.90854 1.91572 1.95356 1.51522 1.71541 1.21108 1.02642 0.97213 0.99421 1.17396 0.83503 0.93381 0.92333 1.91588 1.57889 1.85871 1.74630 1.74738 1.23344 1.02569 1.12787 1.85625 1.31246 1.38020 1.43753 0.88742 0.86538 0.83621 0.83695 0.86018 0.82915 0.79843 0.80371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -42.15 13.92 21.87 0.30 -41.85 16 2 C 0.05 2.49 5.46 85.34 0.47 2.96 16 3 Si 0.96 38.52 24.50 68.60 1.68 40.20 16 4 H -0.24 -8.50 6.56 99.48 0.65 -7.85 16 5 H -0.28 -10.54 7.11 99.48 0.71 -9.83 16 6 H -0.25 -10.25 6.92 99.48 0.69 -9.56 16 7 C -0.45 -23.92 8.42 23.37 0.20 -23.72 16 8 H 0.07 4.12 6.16 -2.91 -0.02 4.10 16 9 C 0.10 4.98 5.09 -21.10 -0.11 4.87 16 10 C -0.24 -9.99 7.08 22.47 0.16 -9.83 16 11 C -0.05 -1.60 9.96 22.02 0.22 -1.38 16 12 C -0.23 -7.68 10.03 22.39 0.22 -7.46 16 13 C -0.02 -0.82 9.70 22.51 0.22 -0.60 16 14 C -0.19 -8.84 5.93 -19.68 -0.12 -8.95 16 15 C 0.27 13.18 7.83 87.09 0.68 13.86 16 16 N -0.52 -23.46 9.95 -302.01 -3.01 -26.46 16 17 C 0.20 8.42 7.77 137.34 1.07 9.49 16 18 C -0.08 -2.66 5.88 -19.99 -0.12 -2.78 16 19 C -0.03 -0.69 9.69 22.47 0.22 -0.48 16 20 C -0.15 -2.54 10.01 22.29 0.22 -2.31 16 21 C 0.15 2.75 7.30 22.41 0.16 2.91 16 22 F -0.12 -2.05 17.26 44.97 0.78 -1.28 16 23 C -0.18 -3.76 9.99 22.33 0.22 -3.54 16 24 C 0.16 4.45 7.28 22.59 0.16 4.61 16 25 F -0.12 -4.04 15.79 44.97 0.71 -3.33 16 26 N -0.42 -19.21 11.84 -57.34 -0.68 -19.89 16 27 O 0.07 3.37 8.48 68.44 0.58 3.95 16 28 H 0.30 13.72 8.29 -92.71 -0.77 12.95 16 29 H 0.12 4.66 4.69 -2.91 -0.01 4.64 16 30 H 0.15 3.78 8.06 -2.91 -0.02 3.75 16 31 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 32 H 0.12 4.57 7.89 -2.91 -0.02 4.54 16 33 H 0.15 3.68 7.86 -2.91 -0.02 3.66 16 34 H 0.18 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -61.62 316.85 5.36 -56.26 By element: Atomic # 1 Polarization: 13.63 SS G_CDS: 1.11 Total: 14.74 kcal Atomic # 6 Polarization: -26.23 SS G_CDS: 3.88 Total: -22.34 kcal Atomic # 7 Polarization: -84.82 SS G_CDS: -3.38 Total: -88.20 kcal Atomic # 8 Polarization: 3.37 SS G_CDS: 0.58 Total: 3.95 kcal Atomic # 9 Polarization: -6.09 SS G_CDS: 1.49 Total: -4.61 kcal Atomic # 14 Polarization: 38.52 SS G_CDS: 1.68 Total: 40.20 kcal Total: -61.62 5.36 -56.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001215610976.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.778 kcal (2) G-P(sol) polarization free energy of solvation -61.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds